mRNA_Ecto-sp9_F_contig9558.17676.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9558.17676.1
Unique NamemRNA_Ecto-sp9_F_contig9558.17676.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig9558.17676.1 vs.
Match: Dus (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPV1_ECTSI)

HSP 1 Score: 569 bits (1466), Expect = 3.570e-202
Identity = 284/288 (98.61%), Postives = 286/288 (99.31%), Query Frame = 1
Query:    1 GCPQGIARKGRYGAFLLEEWALLRDIVSTLAKNLSIPVTCKVRLLDSVEDTITMCKMLVAAGARIITVHGRTKEQKSKATAGCNWDAIRRIKEALPVPVVSNGAISSLEDVERCLRETGCDGVMSSEAVLERPGLFSDNVSTVTGLKMSQDDIVLEYIDLAKQSPPHSRGRTSVPCLRGHMFKCLFTAVAVRTDLRARLTKARTLEDMEEVALAVREARLADPESFDEEKTWYRRHTMPHTSDEWGTPQALWAAQAEVVAEKRLRDPGPEEVGLGDSIFGEEEGAGDY 864
            GCPQGIARKGRYGAFLLEEWALLRDIVSTLAKNLSIPVTCKVRLLDSVEDTITMCKMLVAAGARIITVHGRTKEQKSKATAGCNWDAIRRIKEALPVPV SNGAISSLEDVERCLRETGCDGVMSSE VLERPGLFSDNVSTVTGLKMSQDDIVLEYIDLAKQSPPHSRGRTSVPCLRGHMFKCLFTAVAVRTDLRARLTKARTLE+MEE+ALAVREARLADPESFDEEKTWYRRHTMPHTSDEWGTPQALWAAQAEVVAEKRLRDPGPEEVGLGDSIFGEEEGAGDY
Sbjct:  174 GCPQGIARKGRYGAFLLEEWALLRDIVSTLAKNLSIPVTCKVRLLDSVEDTITMCKMLVAAGARIITVHGRTKEQKSKATAGCNWDAIRRIKEALPVPVFSNGAISSLEDVERCLRETGCDGVMSSEGVLERPGLFSDNVSTVTGLKMSQDDIVLEYIDLAKQSPPHSRGRTSVPCLRGHMFKCLFTAVAVRTDLRARLTKARTLEEMEELALAVREARLADPESFDEEKTWYRRHTMPHTSDEWGTPQALWAAQAEVVAEKRLRDPGPEEVGLGDSIFGEEEGAGDY 461          
BLAST of mRNA_Ecto-sp9_F_contig9558.17676.1 vs.
Match: Dihydrouridine (synthase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TDH4_9STRA)

HSP 1 Score: 235 bits (599), Expect = 2.110e-71
Identity = 130/287 (45.30%), Postives = 179/287 (62.37%), Query Frame = 1
Query:    1 GCPQGIARKGRYGAFLLEEWALLRDIVSTLAKNLSIPVTCKVRLLDSVEDTITMCKMLVAAGARIITVHGRTKEQKSKATAGCNWDAIRRIKEALPVPVVSNGAISSLEDVERCLRETGCDGVMSSEAVLERPGLFSDNVSTVTGLKMSQDDIVLEYIDLAKQSPPHSRGRTSVPCLRGHMFKCLFTAVAVRTDLRARLTKARTLEDMEEVALAVREARLADPESFDE----EKTWYRRHTMPHTSDEWGTPQALWAAQAEVVAEKRLRDPGPEEVGLGDSIFGEEE 849
            GCPQGIARKG+YGAFLL +  L+  IVSTL++ L  PVTCK+RLL +  +T+ +C+ LV AG  ++TVHGRTKEQ       C+W+AIR+IK A+PVPV +NG I+ L+DVE+CL  T  DGVMSSEA+LE PGLFS NV+ VTG + +Q D+  EY++LA Q PP       + C+R H+FK +FT V +  DLR  L  A  +++M  V   +R   L   +  D     E++WY RH     +D+          Q +   ++R  + G E  G+G  +FG E+
Sbjct:  148 GCPQGIARKGKYGAFLLHQADLVVRIVSTLSRELDKPVTCKIRLLPTFSETLALCQALVGAGCSLLTVHGRTKEQNKHLVGSCDWEAIRKIKAAVPVPVFANGGIADLDDVEKCLSFTKVDGVMSSEALLENPGLFSRNVNVVTGHRANQLDLAEEYLELAAQHPPDR-----LKCVRAHVFKLVFTGVQLFEDLRDALVAAENVKEMRWVVGEIRRRALERAQGRDVGSAGERSWYWRHWHKGVTDKGSE----LPRQGKEGGKRRGEEGGVESEGMG-CLFGAED 424          
BLAST of mRNA_Ecto-sp9_F_contig9558.17676.1 vs.
Match: tRNA-dihydrouridine (synthase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D994_9STRA)

HSP 1 Score: 230 bits (586), Expect = 1.710e-70
Identity = 128/287 (44.60%), Postives = 178/287 (62.02%), Query Frame = 1
Query:    1 GCPQGIARKGRYGAFLLEEWALLRDIVSTLAKNLSIPVTCKVRLLDSVEDTITMCKMLVAAGARIITVHGRTKEQKSKATAGCNWDAIRRIKEALPVPVVSNGAISSLEDVERCLRETGCDGVMSSEAVLERPGLFSDNVSTVTGLKMSQDDIVLEYIDLAKQSPPHSRGRTSVPCLRGHMFKCLFTAVAVRTDLRARLTKARTLEDMEEVALAVREARLADPESFDE----EKTWYRRHTMPHTSDEWGTPQALWAAQAEVVAEKRLRDPGPEEVGLGDSIFGEEE 849
            GCPQGIARKG+YGAFLL +  L+  IVSTL++ L+ PVTCK+RLL +  +T+ + + LV AG  ++TVHGRTKEQ       C+W+AIR+IK A+P+PV +NG I+ L+DVE+CL  T  DGVMSSEA+LE PGLFS NV+ VTG + +Q D+  EY++LA Q PP       + C+R H+FK +FT V +  DLR  L  A  +++M  V   +R   L   +  D     E++WY RH     +D           Q +   ++R  + G E  G+G  +FG E+
Sbjct:   63 GCPQGIARKGKYGAFLLHQADLVVRIVSTLSRELNKPVTCKIRLLPTFSETLALSQALVGAGCSLLTVHGRTKEQNKHLVGSCDWEAIRKIKAAVPIPVFANGGIADLDDVEKCLSFTEVDGVMSSEALLENPGLFSRNVNVVTGHRANQLDLAEEYLELAAQHPPDR-----LKCVRAHVFKLVFTGVQLFEDLRDALVAAENVKEMRWVVGEIRRRALERAQGRDVGSAGERSWYWRHWHKGETDRGSE----LPRQGKGGGKRRGEEGGVESEGMG-CLFGAED 339          
BLAST of mRNA_Ecto-sp9_F_contig9558.17676.1 vs.
Match: Putative (tRNA-dihydrouridine synthase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5Z1_9STRA)

HSP 1 Score: 219 bits (557), Expect = 2.310e-66
Identity = 115/215 (53.49%), Postives = 146/215 (67.91%), Query Frame = 1
Query:    1 GCPQGIARKGRYGAFLLEEWALLRDIVSTLAKNLSIPVTCKVRLL-DSVEDTITMCKMLVAAGARIITVHGRTKEQKSKATAGCNWDAIRRIKEALPVPVVSNGAISSLEDVERCLRETGCDGVMSSEAVLERPGLFSDNVSTVTGLKMSQDDIVLEYIDLAKQSPPHSRGRTSVPCLRGHMFKCLFTAVAVRTDLRARLTKARTLEDMEEVALA 642
            GCPQ IAR+GRYGAFLLEEW LL+D+V  +  +  +PVTCKVRLL +SVEDTI +CK+LV AGA ++TVHGRT+ Q       CNWDAIRRI+EA+PVPV +NG I  +ED E CLR TG  GVM SE VL  P  F+ N     G+  + + +  EY+ LA++ PP    R     LRGH+FK LFTA++   DLR  L  + +LED+E V+ A
Sbjct:  110 GCPQNIARRGRYGAFLLEEWDLLQDMVWAMHCSAKVPVTCKVRLLQESVEDTIELCKLLVGAGAAMLTVHGRTRMQVGCLAGVCNWDAIRRIREAVPVPVFANGGIGCIEDFEECLRVTGAAGVMVSEVVLSNPAFFAPNAPGPCGVAPTSESMCREYLALARRFPPK---RYVSGILRGHVFKLLFTALSRCEDLRPVLAVSHSLEDVERVSRA 321          
BLAST of mRNA_Ecto-sp9_F_contig9558.17676.1 vs.
Match: tRNA-dihydrouridine (synthase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WW03_9STRA)

HSP 1 Score: 219 bits (558), Expect = 7.410e-66
Identity = 110/236 (46.61%), Postives = 153/236 (64.83%), Query Frame = 1
Query:    1 GCPQGIARKGRYGAFLLEEWALLRDIVSTLAKNLSIPVTCKVRLLDSVEDTITMCKMLVAAGARIITVHGRTKEQKSKATAGCNWDAIRRIKEALPVPVVSNGAISSLEDVERCLRETGCDGVMSSEAVLERPGLFSDNVSTVTGLKMSQDDIVLEYIDLAKQSPPHSRGRTSVPCLRGHMFKCLFTAVAVRTDLRARLTKARTLEDMEEVALAVREARLADPESFDEEKTWYRRH 708
            GCPQGIA+KGRYGAFL+ E  ++R IV  L+ NLS+PV+CK+RLL   EDT+  C ML+ AG   + VHGRTKE        C+W  I R+K+ LP+PV +NG I + +DV RC+ ET  +GVMSSEA+LERP LF+ +     G ++ Q D+ +EY++LAKQ PP  +       LR H+FK LF  + V TDLR +   A+T +++  + + ++  + A P  F  E +WYRRH
Sbjct:  117 GCPQGIAKKGRYGAFLMHEPEVVRSIVEKLSANLSVPVSCKIRLLPKYEDTLAFCNMLIDAGCCWLVVHGRTKEMNKHLVRECDWATIARLKKELPIPVFANGGIETDDDVVRCMEETNVEGVMSSEAILERPALFAGDKDK-DGQRIRQIDLAMEYMELAKQFPPPEK------FLRAHLFKILFQDLKVHTDLREQTGLAQTHDELLAICVELKSRQEAAPVPFTTEDSWYRRH 345          
BLAST of mRNA_Ecto-sp9_F_contig9558.17676.1 vs.
Match: Dus (domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TEX3_9STRA)

HSP 1 Score: 217 bits (553), Expect = 9.090e-65
Identity = 116/238 (48.74%), Postives = 155/238 (65.13%), Query Frame = 1
Query:    1 GCPQGIARKGRYGAFLLEEWALLRDIVSTLAKNLSIPVTCKVRLLDSVEDTITMCKMLVAAGARIITVHGRTKEQKSKATAGCNWDAIRRIKEALPVPVVSNGAISSLEDVERCLRETGCDGVMSSEAVLERPGLFSDNVSTVTGLKMSQDDIVLEYIDLAKQSPPHSRGRTSVPCLRGHMFKCLFTAVAVRTDLRARLTKARTLEDMEEVALAVREARL--ADPESFDEEKTWYRRH 708
            GCPQGIA+KGRYGAFL+ E  ++R IVS L+ NLS+PVTCK+RLL   EDT+  C ML+ AG   + VHGRTKE        C+WD+I R+K+ALP+PV +NG I + +DV RC+ ETG +GVMSSE +LERP LF+ N     G+ + Q D+ +EY+ LAK  PP  +       LR H+FK LF  + V TDLR ++  A+T + +  +   ++ ARL  A P     E +WYRRH
Sbjct:  145 GCPQGIAKKGRYGAFLMHEPDVVRSIVSKLSSNLSVPVTCKIRLLPKYEDTLAFCNMLIDAGCCWLVVHGRTKEMNKHLVRECDWDSIARLKKALPIPVFANGGIETDDDVVRCMLETGVNGVMSSEGILERPALFA-NDRDKHGVPIRQIDVAIEYLQLAKTFPPPEK------FLRAHLFKILFQELKVHTDLREQIGLAQTHDVLWAITKELK-ARLDAAAPVPTSVEGSWYRRH 374          
BLAST of mRNA_Ecto-sp9_F_contig9558.17676.1 vs.
Match: tRNA-dihydrouridine (synthase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z9A1_9STRA)

HSP 1 Score: 215 bits (547), Expect = 2.710e-64
Identity = 108/240 (45.00%), Postives = 155/240 (64.58%), Query Frame = 1
Query:    1 GCPQGIARKGRYGAFLLEEWALLRDIVSTLAKNLSIPVTCKVRLLDSVEDTITMCKMLVAAGARIITVHGRTKEQKSKATAGCNWDAIRRIKEALPVPVVSNGAISSLEDVERCLRETGCDGVMSSEAVLERPGLFSDNVSTVTGLKMSQDDIVLEYIDLAKQSPPHSRGRTSVPCLRGHMFKCLFTAVAVRTDLRARLTKARTLEDMEEVALAVREARLADPE----SFDEEKTWYRRH 708
            GCPQGIARKGRYGAFL+ E  ++R+IVSTL+ NL +PV+CK+RLL   EDT+  C MLV AG   + +HGRTKE   +    C+W++IRR+++ LP+PV +NG I +++DV+ CL  T  +GVMSSE +LE P LF+ N   VT   + Q D+ LEY+D A + PP  +       +R H+FK LF  +   TDLR  +  A++ +++ ++ L  +  RL  P+     +  E +WYRRH
Sbjct:  109 GCPQGIARKGRYGAFLMHEPDVVREIVSTLSTNLKVPVSCKIRLLPKYEDTLAFCNMLVDAGCCWLVIHGRTKEMNKQLVRECDWESIRRLRKELPIPVFANGGIENVDDVKACLEATEAEGVMSSEGILEWPALFTGNKDPVTQKPLRQVDVALEYLDWAAKYPPPEK------FIRAHLFKLLFQELKAFTDLREAIGVAQSHKELLDITLEAKR-RLESPDYPTIPYSIEDSWYRRH 341          
BLAST of mRNA_Ecto-sp9_F_contig9558.17676.1 vs.
Match: Dus (domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D039_SAPPC)

HSP 1 Score: 211 bits (538), Expect = 1.280e-62
Identity = 109/240 (45.42%), Postives = 155/240 (64.58%), Query Frame = 1
Query:    1 GCPQGIARKGRYGAFLLEEWALLRDIVSTLAKNLSIPVTCKVRLLDSVEDTITMCKMLVAAGARIITVHGRTKEQKSKATAGCNWDAIRRIKEALPVPVVSNGAISSLEDVERCLRETGCDGVMSSEAVLERPGLFSDNVSTVTGLKMSQDDIVLEYIDLAKQSPPHSRGRTSVPCLRGHMFKCLFTAVAVRTDLRARLTKARTLEDMEEVALAVREARLADPES----FDEEKTWYRRH 708
            GCPQGIARKGRYGAFL+ E  ++R+IVSTL++ L++PV+CK+RLL   EDT+  C MLV AG   + +HGRTKE   +    C+WD+I+R+++ LP+PV +NG I + EDV  CL  T  +GVMSSE +LE P LF+ N    TG  +SQ D+ LEY+  A + PP  +       LR H+FK LF  + V TDLR  + + +T  ++  + + ++ ARL  P++    +    +WYRRH
Sbjct:  137 GCPQGIARKGRYGAFLMHEPDVVREIVSTLSRELTVPVSCKIRLLPDYEDTLAFCNMLVDAGCCWLVIHGRTKEMNKQLVRECDWDSIKRLRKELPIPVFANGGIENDEDVAACLAATEAEGVMSSEGILEFPALFTGNKDPTTGEIVSQIDLALEYMAWAAKFPPPEK------FLRAHLFKMLFQELKVFTDLREAIGQGQTHAELLAIVVEMK-ARLDAPDAPVIPYSTADSWYRRH 369          
BLAST of mRNA_Ecto-sp9_F_contig9558.17676.1 vs.
Match: Dus (domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BU30_PYTIN)

HSP 1 Score: 210 bits (535), Expect = 3.500e-62
Identity = 111/240 (46.25%), Postives = 152/240 (63.33%), Query Frame = 1
Query:    1 GCPQGIARKGRYGAFLLEEWALLRDIVSTLAKNLSIPVTCKVRLLDSVEDTITMCKMLVAAGARIITVHGRTKEQKSKATAGCNWDAIRRIKEALPVPVVSNGAISSLEDVERCLRETGCDGVMSSEAVLERPGLFSDNVSTVTGLKMSQDDIVLEYIDLAKQSPPHSRGRTSVPCLRGHMFKCLFTAVAVRTDLRARLTKARTLEDMEEVALAVREARLAD----PESFDEEKTWYRRH 708
            GCPQGIARKGRYG+FL++E  ++R IVSTL++NLSIPVT K+R+    ++T+  C ML +AG  ++ VHGRTKE    A    +WD IR IK+ L +PV++NG I   EDV+RCL  TGCDGVMSSEA+LE P LF          + S  ++  +Y+D A++ PP S        ++ H+FK LF  + V TDLR  L K+   +DM  + +A  +ARL+     P  +  E +WYRRH
Sbjct:  141 GCPQGIARKGRYGSFLMKEKDVVRSIVSTLSENLSIPVTVKIRVFPDRQETLEFCDMLQSAGCDLLVVHGRTKEMNKTAVREVDWDIIREIKQRLTIPVLANGGIEVPEDVDRCLEATGCDGVMSSEAILENPALFGSE-------RPSFMEMAKQYLDFAREYPPASE-----KIIKAHLFKILFQDLRVHTDLRTELAKSPNRDDMARI-VAELDARLSSDAFPPVVYSAETSWYRRH 367          
BLAST of mRNA_Ecto-sp9_F_contig9558.17676.1 vs.
Match: tRNA-dihydrouridine (synthase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZQY0_9STRA)

HSP 1 Score: 208 bits (529), Expect = 2.970e-61
Identity = 105/240 (43.75%), Postives = 153/240 (63.75%), Query Frame = 1
Query:    1 GCPQGIARKGRYGAFLLEEWALLRDIVSTLAKNLSIPVTCKVRLLDSVEDTITMCKMLVAAGARIITVHGRTKEQKSKATAGCNWDAIRRIKEALPVPVVSNGAISSLEDVERCLRETGCDGVMSSEAVLERPGLFSDNVSTVTGLKMSQDDIVLEYIDLAKQSPPHSRGRTSVPCLRGHMFKCLFTAVAVRTDLRARLTKARTLEDMEEVALAVREARLADPES----FDEEKTWYRRH 708
            GCPQGIARKGRYGAFL+ E  ++R+IV TL++ L++PV+CK+RL  + EDT+  C MLV AG   + +HGRTKE   +    C+WD I+R+++ LP+PV +NG I +  DV  CL  T  +GVMSSE +LE P LF+ N +  TG+ +SQ D+ LEY+D A + PP  +       +R H+FK LF  + V TDLR  + + +T  ++  +   ++  RL  P++    +    +WYRRH
Sbjct:  139 GCPQGIARKGRYGAFLMHEPEVVREIVETLSRELTVPVSCKIRLFPNYEDTLAFCNMLVDAGCCWLVIHGRTKEMNKQLVRECDWDTIKRLRKELPIPVFANGGIENDADVVACLAATEAEGVMSSEGILECPALFTGNKNPFTGIPVSQIDLALEYMDWAAKFPPPEK------FIRAHLFKMLFQELKVFTDLREAIGQGQTHAELLAIVHEMK-VRLEAPDAPEIPYSVADSWYRRH 371          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9558.17676.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Dus3.570e-20298.61domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
Dihydrouridine2.110e-7145.30synthase n=1 Tax=Nannochloropsis gaditana TaxID=72... [more]
tRNA-dihydrouridine1.710e-7044.60synthase n=1 Tax=Nannochloropsis salina CCMP1776 T... [more]
Putative2.310e-6653.49tRNA-dihydrouridine synthase (Fragment) n=1 Tax=Tr... [more]
tRNA-dihydrouridine7.410e-6646.61synthase n=1 Tax=Aphanomyces euteiches TaxID=10086... [more]
Dus9.090e-6548.74domain-containing protein n=2 Tax=Aphanomyces inva... [more]
tRNA-dihydrouridine2.710e-6445.00synthase n=1 Tax=Thraustotheca clavata TaxID=74557... [more]
Dus1.280e-6245.42domain-containing protein n=2 Tax=Saprolegnia TaxI... [more]
Dus3.500e-6246.25domain-containing protein n=1 Tax=Pythium insidios... [more]
tRNA-dihydrouridine2.970e-6143.75synthase n=1 Tax=Achlya hypogyna TaxID=1202772 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9558contigEcto-sp9_F_contig9558:2051..5089 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score570.5
Seed ortholog evalue4.6e-160
Seed eggNOG ortholog2880.D8LPV1
KEGG koko:K05542,ko:K05545
EggNOG free text desc.tRNA dihydrouridine synthase activity
EggNOG OGsCOG0042@1,KOG2335@2759
EC1.3.1.88,1.3.1.90
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptiontRNA-dihydrouridine synthase
Ec32 orthologEc-18_002590.1
Exons6
Model size867
Cds size867
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9558.17676.1prot_Ecto-sp9_F_contig9558.17676.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9558 2051..5089 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931040.7614648-CDS-Ecto-sp9_F_contig9558:2050..22931622931040.7614648-CDS-Ecto-sp9_F_contig9558:2050..2293Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9558 2051..2293 -
1692279004.8682127-CDS-Ecto-sp9_F_contig9558:2050..22931692279004.8682127-CDS-Ecto-sp9_F_contig9558:2050..2293Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9558 2051..2293 -
1622931040.778607-CDS-Ecto-sp9_F_contig9558:2841..30151622931040.778607-CDS-Ecto-sp9_F_contig9558:2841..3015Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9558 2842..3015 -
1692279004.8866212-CDS-Ecto-sp9_F_contig9558:2841..30151692279004.8866212-CDS-Ecto-sp9_F_contig9558:2841..3015Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9558 2842..3015 -
1622931040.857147-CDS-Ecto-sp9_F_contig9558:3499..36111622931040.857147-CDS-Ecto-sp9_F_contig9558:3499..3611Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9558 3500..3611 -
1692279004.9021685-CDS-Ecto-sp9_F_contig9558:3499..36111692279004.9021685-CDS-Ecto-sp9_F_contig9558:3499..3611Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9558 3500..3611 -
1622931040.8767934-CDS-Ecto-sp9_F_contig9558:3974..41211622931040.8767934-CDS-Ecto-sp9_F_contig9558:3974..4121Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9558 3975..4121 -
1692279004.9121335-CDS-Ecto-sp9_F_contig9558:3974..41211692279004.9121335-CDS-Ecto-sp9_F_contig9558:3974..4121Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9558 3975..4121 -
1622931040.8939376-CDS-Ecto-sp9_F_contig9558:4495..45911622931040.8939376-CDS-Ecto-sp9_F_contig9558:4495..4591Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9558 4496..4591 -
1692279004.9245927-CDS-Ecto-sp9_F_contig9558:4495..45911692279004.9245927-CDS-Ecto-sp9_F_contig9558:4495..4591Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9558 4496..4591 -
1622931040.9115417-CDS-Ecto-sp9_F_contig9558:4994..50891622931040.9115417-CDS-Ecto-sp9_F_contig9558:4994..5089Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9558 4995..5089 -
1692279004.940178-CDS-Ecto-sp9_F_contig9558:4994..50891692279004.940178-CDS-Ecto-sp9_F_contig9558:4994..5089Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9558 4995..5089 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9558.17676.1

>prot_Ecto-sp9_F_contig9558.17676.1 ID=prot_Ecto-sp9_F_contig9558.17676.1|Name=mRNA_Ecto-sp9_F_contig9558.17676.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=289bp
GCPQGIARKGRYGAFLLEEWALLRDIVSTLAKNLSIPVTCKVRLLDSVED
TITMCKMLVAAGARIITVHGRTKEQKSKATAGCNWDAIRRIKEALPVPVV
SNGAISSLEDVERCLRETGCDGVMSSEAVLERPGLFSDNVSTVTGLKMSQ
DDIVLEYIDLAKQSPPHSRGRTSVPCLRGHMFKCLFTAVAVRTDLRARLT
KARTLEDMEEVALAVREARLADPESFDEEKTWYRRHTMPHTSDEWGTPQA
LWAAQAEVVAEKRLRDPGPEEVGLGDSIFGEEEGAGDY*
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mRNA from alignment at Ecto-sp9_F_contig9558:2051..5089-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9558.17676.1 ID=mRNA_Ecto-sp9_F_contig9558.17676.1|Name=mRNA_Ecto-sp9_F_contig9558.17676.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3039bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9558:2051..5089- (Ectocarpus species9 EcSCA_722f female)
GGATGCCCTCAAGGGATCGCTCGAAAAGGCAGGTATGGTGCGTTCTTGCT GGAGGAGTGGGCGCTGCTGAGGGATATCGTCAGCACTCTCGCCAAGTACG TGCCGCAAGAGACACATTTTTCTTTTTGTGTGTGTGTCGGTACTGTAATT TCCGTGTGTAGAGCTGGAGGCCTCAAAGTGCGGGTTTGGGTGTAGCAAGC TGAGCCCGGCATGCCCTCCGAACAGCGCTTGATAAGTTGAACCCGTCGTT CGTGCAGGCACGCGCAGTTTCCTTCTGTCTCGCTATCGTTGCGGTCTTTG ATCGCTAGAGAAGCTTAGCATCCCCCATGGCGCCTCCTCATGGCCTTTTT CTTTTTTACAACCACGCTGAGACTGACGTCTTTTCATTGGTCAACCGGTT AGCGCGGTCGATGCTACTAAGAATCATGACACACACGCATACCGCCGCCG CCGCCGCTGTGTATTTTTACTTTCGTTGGGCTGTTTTTCCGCCTTCAGGA ACCTGTCGATCCCCGTGACGTGCAAGGTGCGGCTGCTAGACTCGGTGGAG GATACCATCACCATGTGCAAGATGCTCGTCGCCGCGGGTGCCAGGTGAGC CAATTCGCCGTGCGTTCCTTTCCTGTTGTTGTTGGTTGTTGGTGATGTTG ATGGTGATGGTGCGGGACGTTGTCTGAGCTACCCCTACCTGTGATACGAC TTTGGATAACTCTCTCTACGGACGAGGAAGTTCCAACACCGCCGTTGCAC GGCATGAAAATCACGTTTCCTGATGTGGAGATAAAGTGAGGTTGACTGAA CGGAGCAGGGCTTGCTGTGTAGGTATCTTACACGTACCACACGGCTCACC CCATCGGCCCTTCCGTTAACCTCAACCTAAGCCTGGGTGCTTGTTACGCC GGGATCGTTTTGGCCTGTTCTGAATATTTCCATCTCAAACCATATGGCTC TGTCGTCTTTCACTAAAGGATCATCACGGTTCACGGGCGTACCAAGGAGC AGAAATCGAAGGCCACGGCTGGCTGCAACTGGGACGCGATTCGACGGATA AAGGAGGCCCTGCCCGTGCCGGTGGTCTCCAACGGGGCCATTTCCTCGCT TGAAGACGTGGAGCGGTGAGTGAGAAGTCGCCCTGTATCGTCTAGCATGT TCGTTGTTGTCATGGTGTTGTTGTGGTGGTGTTCGTGGTATTTATTTGCC TTGTACCTCGAAGTATACCGTGGCTTGCACAAGAAACAATACAAACTATT TTAGAAACCACACCCTCTACACGCAACTATTCATACACAGGACATCTCAT GCCGCTGTTTTTACGCCGTGCAACGCCACCATACTCGTCTGCCGATAGTC TAAAAAATTGGCTGCAGGTGTGTGTGTGTGCGCTCCTGCGGGTACCGTTT TACCCGCGATGATTTGTGGAAGCTGTTTTTCATGTTTTTTCCTTGTTTTT TTTCATTCATTTTGATGTTGCGCGCCAGGTGCCTGCGAGAAACGGGTTGC GACGGGGTGATGTCATCGGAGGCCGTGCTAGAGCGACCGGGCCTCTTCTC GGACAACGTTTCGACGGTTACAGGGCTCAAGATGTCCCAGGTTCGTATCC ATAGGATGCTGATGCTCTTCGGTGTTTCGACACCAATCCACTTGTTCTAG GATATTTTCCCCATGTTTTGTTGTAGTCGAAGTTCGGCCGACAGCAGTAC AAGGGAAGTGCTCTGCTTGTGCGCTCGTTTTTGACTGACGTTTCATCCTT ATCGGGGCCGTTAGTTGGAGTTTTCCCGTTGGTGCGGCGTTCTCTTTGTT TCCTCGCATTAGCTCTTAGTTGGCCGCGTGTTTATACTGGCGGTGTGAGA GCTGGACCGGCGAATACATCATGGACCTTTTTCACTCTTCAACGCAAGGG AAAAATACTTCGTACGTGCGAAACGTCCGCGGTCTGTTTGTTGTTGATAT TTCTCTCCGCCCTCGTGCATGGAGGCTTGGGCGGCGGAGTGAACTGAACT GTGTCCAAAATACCAGCAGCAAGCAATCCAGCCATATGACAACCGAAACA ACGCCCCACGTATCTACCATGTAGGACGATATCGTTCTCGAGTACATCGA CCTCGCGAAGCAGTCGCCACCGCACTCCCGGGGCCGAACGAGCGTCCCCT GCCTCCGGGGGCACATGTTCAAGTGTCTTTTCACTGCCGTAGCCGTAAGG ACCGACCTGAGGGCGAGGCTCACCAAGGCTCGGACGCTGGAGGATATGGT GAGGGGCGCCAGCCGAACAAAATGTGCCATGCCCGGCAAAAGCGGTGTTG TGAGGTGGAGATAGGCTTGCACGCGGCGGTTGACACCCGCACACACACGT GGCGGGAATTGCGGGAGGAATGCCAACGGTGCGGGTGTATAGCTGAGAAG CGACATGTATGCGGAACCCGTTCTTCTTTGATCGCCGAGACAAGTGTGCT ATCAGACAAGTGTGCTATCATAGTGTTCGTGGCGACCCGACGCGGGCGAG AGTTAGCGCCAGCCGTCTTGTGAAGATGTGTGTCGCTTGGTGGGGTTACA GTGCGCAGCTCTGATGGGGATAAGGCGAGGCCCGCTTGTGGTTGGGGTCC AAGCCAGATGTGAAAAAGGTTACAGAGAGGTATGGCAAGCTATCCCACAC AAAAGATTCCACTGCAAACAAGGGGAATACAAAGTGGTTTGGTTCTCAAG CCTCTAGCGAAACTCCAATGAAAGTCAAGCATCCCTTGACAGAGCAGCCG CCGCAGCAACAACGACACCCATCCTTCCACGCGCACACTAACGCAGGAGG AGGTAGCGCTGGCGGTTAGAGAGGCAAGGCTGGCCGACCCCGAATCCTTT GACGAAGAGAAGACCTGGTACAGACGGCACACCATGCCGCACACCTCAGA CGAGTGGGGGACCCCGCAGGCGCTGTGGGCGGCGCAGGCGGAGGTGGTGG CGGAAAAGCGGCTGAGGGATCCAGGGCCGGAGGAGGTCGGGCTTGGGGAC TCAATCTTTGGGGAGGAAGAAGGGGCCGGGGATTACTAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9558:2051..5089-

>mRNA_Ecto-sp9_F_contig9558.17676.1 ID=mRNA_Ecto-sp9_F_contig9558.17676.1|Name=mRNA_Ecto-sp9_F_contig9558.17676.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1734bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9558:2051..5089- (Ectocarpus species9 EcSCA_722f female)
GGATGCCCTCAAGGGATCGCTCGAAAAGGCAGGTATGGTGCGTTCTTGCT
GGAGGAGTGGGCGCTGCTGAGGGATATCGTCAGCACTCTCGCCAAGGATG
CCCTCAAGGGATCGCTCGAAAAGGCAGGTATGGTGCGTTCTTGCTGGAGG
AGTGGGCGCTGCTGAGGGATATCGTCAGCACTCTCGCCAAGAACCTGTCG
ATCCCCGTGACGTGCAAGGTGCGGCTGCTAGACTCGGTGGAGGATACCAT
CACCATGTGCAAGATGCTCGTCGCCGCGGGTGCCAGGAACCTGTCGATCC
CCGTGACGTGCAAGGTGCGGCTGCTAGACTCGGTGGAGGATACCATCACC
ATGTGCAAGATGCTCGTCGCCGCGGGTGCCAGGATCATCACGGTTCACGG
GCGTACCAAGGAGCAGAAATCGAAGGCCACGGCTGGCTGCAACTGGGACG
CGATTCGACGGATAAAGGAGGCCCTGCCCGTGCCGGTGGTCTCCAACGGG
GCCATTTCCTCGCTTGAAGACGTGGAGCGGATCATCACGGTTCACGGGCG
TACCAAGGAGCAGAAATCGAAGGCCACGGCTGGCTGCAACTGGGACGCGA
TTCGACGGATAAAGGAGGCCCTGCCCGTGCCGGTGGTCTCCAACGGGGCC
ATTTCCTCGCTTGAAGACGTGGAGCGGTGCCTGCGAGAAACGGGTTGCGA
CGGGGTGATGTCATCGGAGGCCGTGCTAGAGCGACCGGGCCTCTTCTCGG
ACAACGTTTCGACGGTTACAGGGCTCAAGATGTCCCAGGTGCCTGCGAGA
AACGGGTTGCGACGGGGTGATGTCATCGGAGGCCGTGCTAGAGCGACCGG
GCCTCTTCTCGGACAACGTTTCGACGGTTACAGGGCTCAAGATGTCCCAG
GACGATATCGTTCTCGAGTACATCGACCTCGCGAAGCAGTCGCCACCGCA
CTCCCGGGGCCGAACGAGCGTCCCCTGCCTCCGGGGGCACATGTTCAAGT
GTCTTTTCACTGCCGTAGCCGTAAGGACCGACCTGAGGGCGAGGCTCACC
AAGGCTCGGACGCTGGAGGATATGGACGATATCGTTCTCGAGTACATCGA
CCTCGCGAAGCAGTCGCCACCGCACTCCCGGGGCCGAACGAGCGTCCCCT
GCCTCCGGGGGCACATGTTCAAGTGTCTTTTCACTGCCGTAGCCGTAAGG
ACCGACCTGAGGGCGAGGCTCACCAAGGCTCGGACGCTGGAGGATATGGA
GGAGGTAGCGCTGGCGGTTAGAGAGGCAAGGCTGGCCGACCCCGAATCCT
TTGACGAAGAGAAGACCTGGTACAGACGGCACACCATGCCGCACACCTCA
GACGAGTGGGGGACCCCGCAGGCGCTGTGGGCGGCGCAGGCGGAGGTGGT
GGCGGAAAAGCGGCTGAGGGATCCAGGGCCGGAGGAGGTCGGGCTTGGGG
ACTCAATCTTTGGGGAGGAAGAAGGGGCCGGGGATTACTAGGAGGAGGTA
GCGCTGGCGGTTAGAGAGGCAAGGCTGGCCGACCCCGAATCCTTTGACGA
AGAGAAGACCTGGTACAGACGGCACACCATGCCGCACACCTCAGACGAGT
GGGGGACCCCGCAGGCGCTGTGGGCGGCGCAGGCGGAGGTGGTGGCGGAA
AAGCGGCTGAGGGATCCAGGGCCGGAGGAGGTCGGGCTTGGGGACTCAAT
CTTTGGGGAGGAAGAAGGGGCCGGGGATTACTAG
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