mRNA_Ecto-sp9_F_contig9545.17669.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9545.17669.1
Unique NamemRNA_Ecto-sp9_F_contig9545.17669.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9545.17669.1 vs.
Match: DM13 (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZT2_ECTSI)

HSP 1 Score: 330 bits (847), Expect = 1.090e-111
Identity = 175/181 (96.69%), Postives = 179/181 (98.90%), Query Frame = 1 
Query:  121 PDDIETQERTESGPTTAEELSILKTATLSSSEVSGTVSLLSVAADNSSFLALNDFVINEACDDAEIRLQEAGFTSGTTSGVVVVPLTADTASAVELDFTEPLNEDFEVELFDQVALWCGEAQLGDAVDLVTPTTVGDGGPLLLREAVMSGTSSYTVEGMVQIIGSGSIIDDALVTTYSLRY 663
            PDDIETQERTESGPTTAEELSILKTATLSSSEVSGTVSLLSVAADNSSFLALNDFVIN+ACDDAEIRLQEAGFTSGTTSGVVVVPLTADTASAVELDFTEPL+EDFE ELFDQVALWCG AQLGDAVDLVTPTTVGDGGPLLLREAVMSGTSSYTVEGMVQIIGSGSI+DDALVTTYSLR+
Sbjct:   24 PDDIETQERTESGPTTAEELSILKTATLSSSEVSGTVSLLSVAADNSSFLALNDFVINDACDDAEIRLQEAGFTSGTTSGVVVVPLTADTASAVELDFTEPLDEDFEAELFDQVALWCGGAQLGDAVDLVTPTTVGDGGPLLLREAVMSGTSSYTVEGMVQIIGSGSIVDDALVTTYSLRF 204
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BLAST of mRNA_Ecto-sp9_F_contig9545.17669.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF23_9PHAE)

HSP 1 Score: 213 bits (542), Expect = 3.080e-67
Identity = 125/167 (74.85%), Postives = 131/167 (78.44%), Query Frame = 1 
Query:    1 MEGSKTCCGYPRKRVLCCAVPTVLAIIA---------GVIVLVVLLLRSPDDIETQERTESGPTTAEELSILKTATLSSSEVSGTVSLLSVAADNSSFLALNDFVINEACDDAEIRLQEAGFTSGTTSGVVVVPLTADTASAVELDFTEPLNEDFEVELFDQVALWC 474
            MEGSKTCCGYPRKRVL C VP VLAIIA         G          SPD IET ERTES  TTAEELSILKTATLSSSEVSGTV LLSVAA NSSF+ALNDFVINEACD+AEIRLQE GFTSGTTSGV+V+PLTADTASAVELDFTEPL+E+F   L DQV   C
Sbjct:    1 MEGSKTCCGYPRKRVLFCTVPAVLAIIASHHCQGDRAG----------SPDFIETPERTESDSTTAEELSILKTATLSSSEVSGTVPLLSVAAGNSSFVALNDFVINEACDEAEIRLQEKGFTSGTTSGVIVMPLTADTASAVELDFTEPLDENFAAVLHDQVRALC 157
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9545.17669.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
DM131.090e-11196.69domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Uncharacterized3.080e-6774.85protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9545contigEcto-sp9_F_contig9545:3430..4990 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionDM13 domain
Ec32 orthologEc-21_003070.1
Exons2
Model size681
Cds size681
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931039.4674096-CDS-Ecto-sp9_F_contig9545:3429..38881622931039.4674096-CDS-Ecto-sp9_F_contig9545:3429..3888Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9545 3430..3888 +
1692279004.2785947-CDS-Ecto-sp9_F_contig9545:3429..38881692279004.2785947-CDS-Ecto-sp9_F_contig9545:3429..3888Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9545 3430..3888 +
1622931039.4842794-CDS-Ecto-sp9_F_contig9545:4768..49901622931039.4842794-CDS-Ecto-sp9_F_contig9545:4768..4990Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9545 4769..4990 +
1692279004.2871141-CDS-Ecto-sp9_F_contig9545:4768..49901692279004.2871141-CDS-Ecto-sp9_F_contig9545:4768..4990Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9545 4769..4990 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9545.17669.1prot_Ecto-sp9_F_contig9545.17669.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9545 3430..4990 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9545.17669.1

>prot_Ecto-sp9_F_contig9545.17669.1 ID=prot_Ecto-sp9_F_contig9545.17669.1|Name=mRNA_Ecto-sp9_F_contig9545.17669.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=227bp
MEGSKTCCGYPRKRVLCCAVPTVLAIIAGVIVLVVLLLRSPDDIETQERT
ESGPTTAEELSILKTATLSSSEVSGTVSLLSVAADNSSFLALNDFVINEA
CDDAEIRLQEAGFTSGTTSGVVVVPLTADTASAVELDFTEPLNEDFEVEL
FDQVALWCGEAQLGDAVDLVTPTTVGDGGPLLLREAVMSGTSSYTVEGMV
QIIGSGSIIDDALVTTYSLRYVCLSY*
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mRNA from alignment at Ecto-sp9_F_contig9545:3430..4990+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9545.17669.1 ID=mRNA_Ecto-sp9_F_contig9545.17669.1|Name=mRNA_Ecto-sp9_F_contig9545.17669.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1561bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9545:3430..4990+ (Ectocarpus species9 EcSCA_722f female)
ATGGAGGGCAGTAAGACGTGCTGCGGTTACCCTCGGAAACGGGTCCTGTG
CTGCGCTGTGCCCACGGTATTAGCCATCATTGCCGGGGTGATCGTGCTGG
TTGTTCTGCTGCTCCGTAGCCCCGACGACATCGAGACGCAGGAGAGGACA
GAATCTGGCCCCACGACCGCCGAGGAACTGTCCATCCTGAAGACGGCGAC
TCTCTCCTCCAGCGAGGTTTCGGGAACCGTTTCCTTGCTTAGCGTCGCCG
CGGACAACAGCTCCTTTCTCGCTCTCAACGACTTCGTCATCAACGAGGCC
TGCGACGATGCCGAGATCCGGCTGCAGGAAGCAGGATTCACGTCCGGCAC
GACTAGCGGTGTCGTCGTGGTGCCTTTGACGGCCGACACAGCGAGTGCTG
TGGAGTTGGATTTCACCGAGCCTCTCAATGAGGATTTCGAGGTAGAACTT
TTCGACCAGGTGAGAGGGCCGTGTCTAAAGTTGTAATCTAGGCTTCAAAT
CTTACCGACGGGACAATAAACATGCGTACGTACATCTAGAACCATTTCCC
ATCTCGAGCCGACATGAGCAACGGTAAACCGAGTGTTCTGCACGTATGAG
ACGTTTCTTTGTTTTCTTGCAGCAGGGGGGGGTGCTACAGCGGTAGTGTT
GGTTGATGAGCGGAGCGTGTTCGATACCAGGATGGTTGTGTTGCTCCCAG
GCATCTAAAGTGGGATGGTGTGTGAAGGTGTTCCAGAGCCTGACGTGAAG
AGTCAAGAGCGCCGAGCCTGTTGCCGGTGTCTGTATTGTACACTAGGAGA
AAATGAACGGCGGTGCCAGACCCTATTCCCTAGCCCTAACCCTAACCCAA
CTTCCCCGATTGTCCAACATGTTTGCTAAATACGAAAATAATAATGCCTC
GACAAGGGCAACATTAGACTTCCGAGCACGCGCGTAGCGAACGAGGCCCC
CCCTGCTCGCGCCTCTCCGTGGTACACGGAACCTCATCGTGCCTCGTCCC
TACTGCGTTGCTATGCGACAAGCGGGGGGTTTCCCTTGTCTCCGGCAAAG
TTTGATTCTCCCCCCTCTCGCATGTTCAAAAGTTGTTTGATACAAAGCAC
GGACACACTTCCTACACTTTTTTTCTCTCCCATGCCGAATACCTCACGGT
GCTTCGCGCTTGGAGCCCGGTCCGGTGAGAACCCGGCGTGCTCCGTCCCG
GCTTTGTAGGGATGCGAGGCCAATGGTCTAACGACTACGGCATGCACGAC
TATGAGTTCACCCCCCTCCCATGCCATTCATTGCAAAATACGTCTGAAAA
AACAAACAAACGAAACGAATCAAACCAACGACGAAAAAGGTCGCCCTGTG
GTGCGGAGAGGCGCAGCTCGGCGACGCGGTGGACCTCGTCACGCCCACTA
CCGTGGGGGACGGCGGGCCGCTGCTGCTGCGGGAGGCGGTCATGTCAGGG
ACGTCCAGCTACACGGTCGAGGGGATGGTGCAGATCATCGGGTCGGGTTC
CATCATCGACGACGCATTGGTCACCACGTACTCCTTGAGGTATGTGTGTC
TTTCTTACTAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9545:3430..4990+

>mRNA_Ecto-sp9_F_contig9545.17669.1 ID=mRNA_Ecto-sp9_F_contig9545.17669.1|Name=mRNA_Ecto-sp9_F_contig9545.17669.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1362bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9545:3430..4990+ (Ectocarpus species9 EcSCA_722f female)
ATGGAGGGCAGTAAGACGTGCTGCGGTTACCCTCGGAAACGGGTCCTGTG
CTGCGCTGTGCCCACGGTATTAGCCATCATTGCCGGGGTGATCGTGCTGG
TTGTTCTGCTGCTCCGTAGCCCCGACGACATCGAGACGCAGGAGAGGACA
GAATCTGGCCCCACGACCGCCGAGGAACTGTCCATCCTGAAGACGGCGAC
TCTCTCCTCCAGCGAGGTTTCGGGAACCGTTTCCTTGCTTAGCGTCGCCG
CGGACAACAGCTCCTTTCTCGCTCTCAACGACTTCGTCATCAACGAGGCC
TGCGACGATGCCGAGATCCGGCTGCAGGAAGCAGGATTCACGTCCGGCAC
GACTAGCGGTGTCGTCGTGGTGCCTTTGACGGCCGACACAGCGAGTGCTG
TGGAGTTGGATTTCACCGAGCCTCTCAATGAGGATTTCGAGGTAGAACTT
TTCGACCAGATGGAGGGCAGTAAGACGTGCTGCGGTTACCCTCGGAAACG
GGTCCTGTGCTGCGCTGTGCCCACGGTATTAGCCATCATTGCCGGGGTGA
TCGTGCTGGTTGTTCTGCTGCTCCGTAGCCCCGACGACATCGAGACGCAG
GAGAGGACAGAATCTGGCCCCACGACCGCCGAGGAACTGTCCATCCTGAA
GACGGCGACTCTCTCCTCCAGCGAGGTTTCGGGAACCGTTTCCTTGCTTA
GCGTCGCCGCGGACAACAGCTCCTTTCTCGCTCTCAACGACTTCGTCATC
AACGAGGCCTGCGACGATGCCGAGATCCGGCTGCAGGAAGCAGGATTCAC
GTCCGGCACGACTAGCGGTGTCGTCGTGGTGCCTTTGACGGCCGACACAG
CGAGTGCTGTGGAGTTGGATTTCACCGAGCCTCTCAATGAGGATTTCGAG
GTAGAACTTTTCGACCAGGTCGCCCTGTGGTGCGGAGAGGCGCAGCTCGG
CGACGCGGTGGACCTCGTCACGCCCACTACCGTGGGGGACGGCGGGCCGC
TGCTGCTGCGGGAGGCGGTCATGTCAGGGACGTCCAGCTACACGGTCGAG
GGGATGGTGCAGATCATCGGGTCGGGTTCCATCATCGACGACGCATTGGT
CACCACGTACTCCTTGAGGTATGTGTGTCTTTCTTACTAGGTCGCCCTGT
GGTGCGGAGAGGCGCAGCTCGGCGACGCGGTGGACCTCGTCACGCCCACT
ACCGTGGGGGACGGCGGGCCGCTGCTGCTGCGGGAGGCGGTCATGTCAGG
GACGTCCAGCTACACGGTCGAGGGGATGGTGCAGATCATCGGGTCGGGTT
CCATCATCGACGACGCATTGGTCACCACGTACTCCTTGAGGTATGTGTGT
CTTTCTTACTAG
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