mRNA_Ecto-sp9_F_contig9545.17668.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9545.17668.1
Unique NamemRNA_Ecto-sp9_F_contig9545.17668.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9545.17668.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZT3_ECTSI)

HSP 1 Score: 224 bits (571), Expect = 4.090e-74
Identity = 106/117 (90.60%), Postives = 112/117 (95.73%), Query Frame = 1 
Query:    1 MHRVSASASRSLPRDDLRRYSYKLSYPDEERRGVGQRVLPDVCRCSLPERPDAWSDVTWRKFLTAMARLPCKGKRWRRPMGRRRGDKKPDDTGEREKGETGTPRASTTTRGDYCVAG 351
            MHR+S SASRSLPRDDLRRYSYKLSYPDEER+GVGQRVLPDVCRC LPERPDAWSD+TWRKFLTAMARLPCKGKRWRRPMGRRRGDKK DDTGE++K ETGTPRASTT+ GDYCVAG
Sbjct:    1 MHRISTSASRSLPRDDLRRYSYKLSYPDEERQGVGQRVLPDVCRCPLPERPDAWSDITWRKFLTAMARLPCKGKRWRRPMGRRRGDKKSDDTGEQQKAETGTPRASTTS-GDYCVAG 116
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9545.17668.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized4.090e-7490.60protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9545contigEcto-sp9_F_contig9545:1020..2395 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-21_003080.1
Exons3
Model size354
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9545.17668.1prot_Ecto-sp9_F_contig9545.17668.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9545 1020..2395 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931039.39226-CDS-Ecto-sp9_F_contig9545:1019..11051622931039.39226-CDS-Ecto-sp9_F_contig9545:1019..1105Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9545 1020..1105 -
1692279004.2425675-CDS-Ecto-sp9_F_contig9545:1019..11051692279004.2425675-CDS-Ecto-sp9_F_contig9545:1019..1105Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9545 1020..1105 -
1622931039.4042554-CDS-Ecto-sp9_F_contig9545:1816..18681622931039.4042554-CDS-Ecto-sp9_F_contig9545:1816..1868Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9545 1817..1868 -
1692279004.2529414-CDS-Ecto-sp9_F_contig9545:1816..18681692279004.2529414-CDS-Ecto-sp9_F_contig9545:1816..1868Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9545 1817..1868 -
1622931039.427985-CDS-Ecto-sp9_F_contig9545:2179..23951622931039.427985-CDS-Ecto-sp9_F_contig9545:2179..2395Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9545 2180..2395 -
1692279004.2682471-CDS-Ecto-sp9_F_contig9545:2179..23951692279004.2682471-CDS-Ecto-sp9_F_contig9545:2179..2395Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9545 2180..2395 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9545.17668.1

>prot_Ecto-sp9_F_contig9545.17668.1 ID=prot_Ecto-sp9_F_contig9545.17668.1|Name=mRNA_Ecto-sp9_F_contig9545.17668.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=118bp
MHRVSASASRSLPRDDLRRYSYKLSYPDEERRGVGQRVLPDVCRCSLPER
PDAWSDVTWRKFLTAMARLPCKGKRWRRPMGRRRGDKKPDDTGEREKGET
GTPRASTTTRGDYCVAG*
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mRNA from alignment at Ecto-sp9_F_contig9545:1020..2395-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9545.17668.1 ID=mRNA_Ecto-sp9_F_contig9545.17668.1|Name=mRNA_Ecto-sp9_F_contig9545.17668.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1376bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9545:1020..2395- (Ectocarpus species9 EcSCA_722f female)
ATGCACAGAGTCTCCGCGTCCGCTTCTCGCAGCCTGCCGAGGGATGACCT
CAGGCGCTACAGCTACAAGCTCTCGTATCCTGACGAAGAACGTCGGGGAG
TCGGGCAACGGGTGCTACCAGACGTGTGCCGGTGCTCGCTGCCAGAGCGG
CCAGACGCCTGGAGCGACGTCACGTGGCGGAAGTTCCTCACGGCGATGGC
GCGCTTGCCTTGCAAGGTGTGCAAGACGGAAGCGTTGATACCCGCCTTGC
CCACGCGATCCTCGCTGCCGCGGGGCAGCACCACGACTTCCTCCATCATG
AGGCTGCTTTCGAAGGGCAAGAAGCACTACCACAAGGAGCCCAAGATACA
GAACCCGCCCGCGCGGAGCGAGGAGGAGGCGGAAGCACATCACCGCGTGC
CGCAGGAACAGGAGCAACAGGGGTCGCCGTTCTGTTCTACCGTTCCCTCT
TCTGGTGCTGCTGCTGATGCAGAGGGTGCGGCGAGTACTACCCCCTCCGC
TGCTGTTGCTGCAGTGTTCCCCCGCAGGGAAAGAGGTGGCGCCGCCCCAT
GGGAAGACGAAGAGGAGACAAAAAGCCAGGTGAGACGGCGGAGTTTCTTT
TCAAGAAAATGCTCCATGGGTGCATTCGAATCTATCTCTCCTCTGGAGGA
GATGAACGAAAAATTCGCGATCTACTGCAGAGGTAGGCAGTGCATCGAAG
AGAGTAAACACACACCACTTGAGGACGCCGGAACTTCTCGCGTTCCAAGT
CCAAAGGCAAGCACTGCAGGGTGAAAAGAAGGTGGACAACAACGGTGATG
GTTACTGTGGCAAGATTGGGCAGGGTGGGACGCACCCGACCGCTAGCTGT
TTCTGGAGCAGAGGTGTCGAACGTGGATATTTCTCTCTAGCAAACTCATT
TTGGCCACTGAGCTTTGCTCGCTTCGCTCGATCGCCAACTGAAACGCACG
GAACACAAGCTCGGGCTATCTCAACAAGTAATCGAAATGTACTCCGAGCT
GCAGAGCTTTTTTCCCACGCGTATCATGATACCTGTGGCCGATTTACCCG
CCCGAAGAGAGTCTCAAAATCCTGGGAACCCAGGATAAAGTTGAATAGCA
CTACGAATTAGGGTAGCTCGCCCTGACCGGAGGGGCCGAACAAGCAGACC
CTTTGTCTACCAAAGATGGGACACAGATGCATGCTGGAGCTCGGAAATTC
AATGCAGGTTCGAACAAACGGACCTCACTGTACATACAGTACGTCTAATT
ATGAACAAAACGCTACACCGCATTTGCAAATCGCTCAAAGACGATACCGG
GGAGCGGGAAAAAGGAGAGACCGGAACACCGAGAGCTAGCACTACTACAC
GCGGCGACTATTGTGTAGCTGGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9545:1020..2395-

>mRNA_Ecto-sp9_F_contig9545.17668.1 ID=mRNA_Ecto-sp9_F_contig9545.17668.1|Name=mRNA_Ecto-sp9_F_contig9545.17668.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=708bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9545:1020..2395- (Ectocarpus species9 EcSCA_722f female)
ATGCACAGAGTCTCCGCGTCCGCTTCTCGCAGCCTGCCGAGGGATGACCT
CAGGCGCTACAGCTACAAGCTCTCGTATCCTGACGAAGAACGTCGGGGAG
TCGGGCAACGGGTGCTACCAGACGTGTGCCGGTGCTCGCTGCCAGAGCGG
CCAGACGCCTGGAGCGACGTCACGTGGCGGAAGTTCCTCACGGCGATGGC
GCGCTTGCCTTGCAAGATGCACAGAGTCTCCGCGTCCGCTTCTCGCAGCC
TGCCGAGGGATGACCTCAGGCGCTACAGCTACAAGCTCTCGTATCCTGAC
GAAGAACGTCGGGGAGTCGGGCAACGGGTGCTACCAGACGTGTGCCGGTG
CTCGCTGCCAGAGCGGCCAGACGCCTGGAGCGACGTCACGTGGCGGAAGT
TCCTCACGGCGATGGCGCGCTTGCCTTGCAAGGGAAAGAGGTGGCGCCGC
CCCATGGGAAGACGAAGAGGAGACAAAAAGCCAGGGAAAGAGGTGGCGCC
GCCCCATGGGAAGACGAAGAGGAGACAAAAAGCCAGACGATACCGGGGAG
CGGGAAAAAGGAGAGACCGGAACACCGAGAGCTAGCACTACTACACGCGG
CGACTATTGTGTAGCTGGGTGAACGATACCGGGGAGCGGGAAAAAGGAGA
GACCGGAACACCGAGAGCTAGCACTACTACACGCGGCGACTATTGTGTAG
CTGGGTGA
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