mRNA_Ecto-sp9_F_contig9518.17650.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9518.17650.1
Unique NamemRNA_Ecto-sp9_F_contig9518.17650.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9518.17650.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKB9_ECTSI)

HSP 1 Score: 236 bits (601), Expect = 1.050e-70
Identity = 114/121 (94.21%), Postives = 118/121 (97.52%), Query Frame = 2 
Query:    2 DVIVPASLFVMCKTVVEDDGGGLFLNGTLVQRVLVKNVPTISPTDSTVDAATHSKLESLLFPIHLKGPLPGGDIKHRTLYIDDPREPSDQEAEAPGTVQLCAQTLDLISAPLDVRQHWSTY 364
            D IVPASLFVMCKTVVEDDGGGLFLNGTLVQRVLVKNVPTIS +D T+DAATHSKLESLLFPIHLKGPLPGGDIKHRTLYIDDPREPSDQEAEAPGTVQLCAQTLDLISAPLDVRQHW+T+
Sbjct:   44 DFIVPASLFVMCKTVVEDDGGGLFLNGTLVQRVLVKNVPTISFSDGTIDAATHSKLESLLFPIHLKGPLPGGDIKHRTLYIDDPREPSDQEAEAPGTVQLCAQTLDLISAPLDVRQHWNTF 164
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BLAST of mRNA_Ecto-sp9_F_contig9518.17650.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA7_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 2.000e-17
Identity = 57/128 (44.53%), Postives = 74/128 (57.81%), Query Frame = 2 
Query:   11 VPASLFVMCKTVVEDDGGGLFLNGTLVQRVLVKNVPTISPTDSTVDAATHSKLESLLFPIHLKGPLPGGDIKHRTLYIDDPREPSDQEAEAPGTVQLCAQTLDLISAPLDVRQHWSTY-VRISCVAID 391
            VP +LFV+CKTVVEDD G L+LN T+VQRV ++    + P D           + LLF + +KGP  GG I  R   ++D R  S        TV +C +TLDL +APLDVRQHW+ +  RI    ID
Sbjct:   35 VPVALFVLCKTVVEDDQGALYLNATVVQRVPLETTRPMPPQDQLE--------KDLLFEMKVKGPSAGGGITSRRRSVEDVRGRSQP------TVMVC-ETLDLKTAPLDVRQHWNWFPFRILKATID 147
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9518.17650.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.050e-7094.21protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKB9... [more]
Uncharacterized2.000e-1744.53protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9518contigEcto-sp9_F_contig9518:3139..4116 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size978
Cds size372
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9518.17650.1prot_Ecto-sp9_F_contig9518.17650.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9518 3170..3541 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931036.7564888-UTR-Ecto-sp9_F_contig9518:3138..31691622931036.7564888-UTR-Ecto-sp9_F_contig9518:3138..3169Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9518 3139..3169 +
1692279003.0378397-UTR-Ecto-sp9_F_contig9518:3138..31691692279003.0378397-UTR-Ecto-sp9_F_contig9518:3138..3169Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9518 3139..3169 +
1622931036.802423-UTR-Ecto-sp9_F_contig9518:3541..41161622931036.802423-UTR-Ecto-sp9_F_contig9518:3541..4116Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9518 3542..4116 +
1692279003.0575612-UTR-Ecto-sp9_F_contig9518:3541..41161692279003.0575612-UTR-Ecto-sp9_F_contig9518:3541..4116Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9518 3542..4116 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931036.7751172-CDS-Ecto-sp9_F_contig9518:3169..35411622931036.7751172-CDS-Ecto-sp9_F_contig9518:3169..3541Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9518 3170..3541 +
1692279003.0460002-CDS-Ecto-sp9_F_contig9518:3169..35411692279003.0460002-CDS-Ecto-sp9_F_contig9518:3169..3541Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9518 3170..3541 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9518.17650.1

>prot_Ecto-sp9_F_contig9518.17650.1 ID=prot_Ecto-sp9_F_contig9518.17650.1|Name=mRNA_Ecto-sp9_F_contig9518.17650.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=124bp
MCKTVVEDDGGGLFLNGTLVQRVLVKNVPTISPTDSTVDAATHSKLESLL
FPIHLKGPLPGGDIKHRTLYIDDPREPSDQEAEAPGTVQLCAQTLDLISA
PLDVRQHWSTYVRISCVAIDPIP*
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mRNA from alignment at Ecto-sp9_F_contig9518:3139..4116+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9518.17650.1 ID=mRNA_Ecto-sp9_F_contig9518.17650.1|Name=mRNA_Ecto-sp9_F_contig9518.17650.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=978bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9518:3139..4116+ (Ectocarpus species9 EcSCA_722f female)
AGATGTTATCGTCCCGGCCTCCCTGTTCGTCATGTGCAAGACCGTGGTGG
AGGACGACGGCGGCGGACTATTCCTGAACGGGACTCTCGTCCAAAGAGTC
TTGGTGAAAAACGTTCCAACTATTTCCCCCACAGACAGCACCGTTGACGC
TGCGACCCATTCGAAGCTGGAATCGTTGTTGTTCCCGATCCACCTCAAGG
GCCCACTCCCCGGCGGGGACATCAAGCATAGGACGCTTTACATTGATGAC
CCCCGTGAGCCCAGCGATCAAGAGGCCGAAGCGCCAGGGACAGTTCAGTT
ATGCGCACAGACACTGGACCTCATCAGTGCTCCACTCGACGTTCGCCAAC
ACTGGAGCACGTATGTACGAATTTCATGTGTTGCGATAGATCCTATCCCC
TAGACTATTTAGTCCGAACCAACCAGCCTTGTACTGTAGGTAGATGCTGT
GTAGGTTGGCCCACACTTGATGCTGTAGGGTAGGCTGGTGTGCGTGGTGA
AAATCAGACTAGTTCGGGACTGCGCTGCGGCGTGACTTTTCCGGAATGCA
GCGACACCACAATACAAGAATGGCGTTCCCAGACTCGTATTCCAATATGG
AGAGCATGGAGAGCATGGAGAGCATGGACTGCACCATTTTCGACAATATT
CAAGAGCTGCTCGAGCCGTAGGGGTCCTGGTTCTTGTTCCCCGGTGGTGC
GTGTGTTGAATGCTGGTCTCAGTGTTCTGGCGCCATTTACCTTTTGGTGT
GGTCTGCGTATACCAGTTGGCATTATCCAGGAAAAATGTCACAGAGCAGC
TGTTTTGGCGAACATCTTTCTCTGCCTTAGCTCCTGCGTTGCTTGCCCTA
GATTTCATATCTAGAAGCGCTTCGCGGTCGCGTTCACTCGTCGATCGCGA
GAACATGTGAACACATACGAATTTGTCGTTCTCGAGAAGGACATCTACTT
ACGTTGGAGGGAATTAGACTGACCGGGC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9518:3139..4116+

>mRNA_Ecto-sp9_F_contig9518.17650.1 ID=mRNA_Ecto-sp9_F_contig9518.17650.1|Name=mRNA_Ecto-sp9_F_contig9518.17650.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=744bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9518:3139..4116+ (Ectocarpus species9 EcSCA_722f female)
ATGTGCAAGACCGTGGTGGAGGACGACGGCGGCGGACTATTCCTGAACGG
GACTCTCGTCCAAAGAGTCTTGGTGAAAAACGTTCCAACTATTTCCCCCA
CAGACAGCACCGTTGACGCTGCGACCCATTCGAAGCTGGAATCGTTGTTG
TTCCCGATCCACCTCAAGGGCCCACTCCCCGGCGGGGACATCAAGCATAG
GACGCTTTACATTGATGACCCCCGTGAGCCCAGCGATCAAGAGGCCGAAG
CGCCAGGGACAGTTCAGTTATGCGCACAGACACTGGACCTCATCAGTGCT
CCACTCGACGTTCGCCAACACTGGAGCACGTATGTACGAATTTCATGTGT
TGCGATAGATCCTATCCCCTAGATGTGCAAGACCGTGGTGGAGGACGACG
GCGGCGGACTATTCCTGAACGGGACTCTCGTCCAAAGAGTCTTGGTGAAA
AACGTTCCAACTATTTCCCCCACAGACAGCACCGTTGACGCTGCGACCCA
TTCGAAGCTGGAATCGTTGTTGTTCCCGATCCACCTCAAGGGCCCACTCC
CCGGCGGGGACATCAAGCATAGGACGCTTTACATTGATGACCCCCGTGAG
CCCAGCGATCAAGAGGCCGAAGCGCCAGGGACAGTTCAGTTATGCGCACA
GACACTGGACCTCATCAGTGCTCCACTCGACGTTCGCCAACACTGGAGCA
CGTATGTACGAATTTCATGTGTTGCGATAGATCCTATCCCCTAG
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