mRNA_Ecto-sp9_F_contig9446.17598.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9446.17598.1
Unique NamemRNA_Ecto-sp9_F_contig9446.17598.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9446.17598.1 vs.
Match: PHD-type (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3P5_ECTSI)

HSP 1 Score: 273 bits (698), Expect = 1.360e-86
Identity = 169/174 (97.13%), Postives = 170/174 (97.70%), Query Frame = 1 
Query:    1 RFHPLCGAVLTAETQSSSEGKGWKGLGADMTIQCDEHKHKADEPCAKCGGIDGELVGCARCPTYYHKGCHDPPIPDDTGEKWWCATCTAALAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-PEPPTPGSPEHIGWMKRMQKKMEAVKSALMGKGKAPKATPTGGKG 519
            RFHPLCGAVLTAETQSSSEGK WKGLGADMTIQCDEHKHKADEPCAKCGGIDGELVGCARCPTYYHK CHDPPIPDDTGEKWWCATCTAALAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PEPPTPGSPEHIGWMKRMQKKMEAVKSA MGKGKAPKATPTGG+G
Sbjct:  337 RFHPLCGAVLTAETQSSSEGKDWKGLGADMTIQCDEHKHKADEPCAKCGGIDGELVGCARCPTYYHKDCHDPPIPDDTGEKWWCATCTAALAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEPPTPGSPEHIGWMKRMQKKMEAVKSAFMGKGKAPKATPTGGRG 510
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BLAST of mRNA_Ecto-sp9_F_contig9446.17598.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEG7_9PHAE)

HSP 1 Score: 203 bits (516), Expect = 3.590e-57
Identity = 138/164 (84.15%), Postives = 140/164 (85.37%), Query Frame = 1 
Query:    1 RFHPLCGAVLTAETQSSSEGKGWKGLGADMTIQCDEHKHKADEPCAKCGGIDGELVGCARCPTYYHKGCHDPPIPDDTGEKWWCATCTAALAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---PEPPTPGSPEHIGWMKRMQKKMEAVKSALMGKG 483
            RFHPLCGAVLTAETQSSSEGK WKGLGADMTIQCDEHKHKA +               A CPTYYHKGCHDPPIPD+TGEKWWCATCTAALA  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   PEPPTPGSPEHIGWMKRMQKKMEAVKSA MGKG
Sbjct:  423 RFHPLCGAVLTAETQSSSEGKDWKGLGADMTIQCDEHKHKASQ---------------AGCPTYYHKGCHDPPIPDNTGEKWWCATCTAALAMGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEPPTPGSPEHIGWMKRMQKKMEAVKSAFMGKG 571
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9446.17598.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
PHD-type1.360e-8697.13domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Uncharacterized3.590e-5784.15protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9446contigEcto-sp9_F_contig9446:1497..4319 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score63.5
Seed ortholog evalue1.2e-07
Seed eggNOG ortholog10224.XP_006813753.1
Preferred nameBAZ1B
KEGG koko:K11658
GOsGO:0000775,GO:0000785,GO:0000792,GO:0000793,GO:0003674,GO:0003824,GO:0004672,GO:0004713,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005721,GO:0006325,GO:0006333,GO:0006338,GO:0006355,GO:0006357,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008150,GO:0008152,GO:0008270,GO:0009889,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010604,GO:0010628,GO:0016043,GO:0016301,GO:0016310,GO:0016569,GO:0016570,GO:0016572,GO:0016604,GO:0016740,GO:0016772,GO:0016773,GO:0018108,GO:0018193,GO:0018212,GO:0019219,GO:0019222,GO:0019538,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0033554,GO:0035173,GO:0036211,GO:0040029,GO:0042393,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045815,GO:0046872,GO:0046914,GO:0048518,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051276,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0098687,GO:0140096,GO:1901564,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.histone kinase activity
EggNOG OGs38CWU@33154,3BB9F@33208,3CUUU@33213,COG5076@1,KOG1245@2759
Ec32 ortholog descriptionPHD-type zinc finger and ORC2 domain protein
COG Functional cat.B
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRING/FYVE/PHD-type zinc finger protein
Ec32 orthologEc-00_006720.1
Exons4
Model size553
Cds size552
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9446.17598.1prot_Ecto-sp9_F_contig9446.17598.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9446 1498..4319 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931027.603263-CDS-Ecto-sp9_F_contig9446:1497..16021622931027.603263-CDS-Ecto-sp9_F_contig9446:1497..1602Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9446 1498..1602 -
1692278999.0943644-CDS-Ecto-sp9_F_contig9446:1497..16021692278999.0943644-CDS-Ecto-sp9_F_contig9446:1497..1602Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9446 1498..1602 -
1622931027.6230812-CDS-Ecto-sp9_F_contig9446:2759..30051622931027.6230812-CDS-Ecto-sp9_F_contig9446:2759..3005Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9446 2760..3005 -
1692278999.119473-CDS-Ecto-sp9_F_contig9446:2759..30051692278999.119473-CDS-Ecto-sp9_F_contig9446:2759..3005Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9446 2760..3005 -
1622931027.636576-CDS-Ecto-sp9_F_contig9446:3381..34621622931027.636576-CDS-Ecto-sp9_F_contig9446:3381..3462Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9446 3382..3462 -
1692278999.1330073-CDS-Ecto-sp9_F_contig9446:3381..34621692278999.1330073-CDS-Ecto-sp9_F_contig9446:3381..3462Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9446 3382..3462 -
1622931027.6522453-CDS-Ecto-sp9_F_contig9446:4199..43191622931027.6522453-CDS-Ecto-sp9_F_contig9446:4199..4319Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9446 4200..4319 -
1692278999.1418169-CDS-Ecto-sp9_F_contig9446:4199..43191692278999.1418169-CDS-Ecto-sp9_F_contig9446:4199..4319Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9446 4200..4319 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9446.17598.1

>prot_Ecto-sp9_F_contig9446.17598.1 ID=prot_Ecto-sp9_F_contig9446.17598.1|Name=mRNA_Ecto-sp9_F_contig9446.17598.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=184bp
RFHPLCGAVLTAETQSSSEGKGWKGLGADMTIQCDEHKHKADEPCAKCGG
IDGELVGCARCPTYYHKGCHDPPIPDDTGEKWWCATCTAALAMGGGESSE
DDEEQDEEEEEEQQEQEEGVQEEEEDDDPEPPTPGSPEHIGWMKRMQKKM
EAVKSALMGKGKAPKATPTGGKGGGGKAAKAKPE
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mRNA from alignment at Ecto-sp9_F_contig9446:1497..4319-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9446.17598.1 ID=mRNA_Ecto-sp9_F_contig9446.17598.1|Name=mRNA_Ecto-sp9_F_contig9446.17598.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2823bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9446:1497..4319- (Ectocarpus species9 EcSCA_722f female)
AGGTTTCACCCGCTGTGCGGAGCGGTTCTTACGGCCGAGACGCAGTCGAG
CAGCGAGGGCAAGGGCTGGAAGGGCCTTGGCGCGGACATGACCATCCAGT
GCGACGAGCACAAGCACAAGGCGAGAGCCAAGCGGTGTTGTGGTTGTTAG
TTGGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
CGTCGTTGTGGTTGGTGTTGTTGTGGTCGCTTTTGTTGTCATTGACGGCG
AAGGTTCAGCTGTTGATTTTCTCGGGTCTTGTCTTAGCGCTTCGCATCAA
ACTTCGTTTTTTGACCACCCACGCGCAAGCCCTATTGCGCCAGTCGCTGC
TGGTGTTCCTGAATGGGTGCGCGTGACCATGTAGTGTCGCCAGCAATCAC
GAGAGACAAGCCGAATGGGCGCACAGCTCCATCTTTTTGTGTGTCAAATG
TTGCGGGTCCTAGTTAGACTTGGCAAATACGCGCGTGTGTCCTCTCAAAC
ATTAGTTTCACCGGGCCTGTCAGACCAACTGCCGCCGCCGCTGGTGGTGG
CCGTTGGCTGTTGGCAGAGGTTCTAGATCGTTGGACAATACCGTACTTGC
CGGCTGTCCGTCGGCGCCCCCGGACATCGTTGCGTTTCGTTGTACGCACA
TGGCCATGTGTGCGCGATCGAGTACGTTTTTTCTCACGCACCGGGGGCTG
GGAAACTGCTGACATCTCCTCAAGTTTTTTCCCGACTCCGTCTTTCCTCT
TCTTTTTCTTCTTTTTTTCTTCTTCTTTTGTTGTTGTTGTTGTTCTTCTT
CTTCTTCTTCTTCCTCTTCTTCTTCTTCTTGGGGGCTCCGCAAAATCGAT
GGTTCAGGCGGACGAGCCCTGCGCAAAGTGCGGTGGAATCGACGGCGAGT
TGGTGGGCTGCGCAAGGTGCCCGACCTACTACCACAAGGTTAGTCGTCCG
AAGCCACTTCCATCCATCCCGATTCCTGCCGATGTGTACCACCTACCTCT
TGGGCATGGTTGCGCTCTAGTGATTATTGATTGTTTGCACCGCATCCGGT
CTCGTAACACGGTTAATTCGTCTTGATATCCTCTTTACCCACGGTACGCT
ATATTAGGAGCTGGGTCGCTGTAGCCCCCCGCCCGCGCGCGCCCCTGGTT
GTTACAACATGAGATTGTTGTAAGCTGTTTTTTTATCCCCGCTTTCGCCT
CTGCTTCCAGGATTGCTTCTGCCCCCCTCTTGAATTCTCCCCAACGCTTA
CCAACAGCGGCTGTTCTATGGTATGGTATGTATGTGCGTACGTGTTTTTT
TTTTTTACCCACAGGGCTGTCACGACCCCCCAATCCCCGACGATACGGGC
GAGAAATGGTGGTGCGCTACGTGTACGGCGGCGTTGGCCATGGGCGGGGG
GGAGTCTTCGGAAGACGACGAGGAGCAGGATGAGGAGGAAGAGGAAGAGC
AACAGGAGCAAGAAGAGGGGGTGCAGGAAGAGGAGGAGGATGATGACCCG
GAGCCCCCCACTCCCGGTAGCCCGGAGCATATCGGTTGGATGAAGAGGAT
GCAGAAGAAGGTGCGTCGGCGATGACGTGTGTGGGTTGTTGCTCGTGGGT
TTGTGTTTTGCGTTGGGCCTCTTCCGTTCGGTGGATAGTCTTTGACTGTC
TTGAGCAATCCGCACGTCCAACATGTAGTGCATTTACACGTCGGCCGGTG
TGATTTCTTGTGGTGACTTTTGTGCGCGTCCCGAATATTGCTTCCGTAAA
ACCAAACACAGGTTACGTTATTTATACTGAAGTAAGTTAAACACGCAACG
ATATAGTTTTATAGCTTCCCTAACACCCAAAACAAGTACTCTAGTGCTCC
AAATCGAATATAAAAACACACAAAACATATTTTCATTTTGCCGTATGCAC
CTAGTCTGTGCGGAAATGGATCGGCGCTTGGCAGCAGCTGTGTCCATCGG
GAAGGGGGCGTGTTGTCCCTACTGTAGCGCTATCACGCGGGGCGAGGCCA
CCGTGCGCTGGCAGGCCGGCGCAAGCCGACAGATGTTGTTTTTTATTTTC
ATTTGTCGATGAAAACAGCGACGCCGTTTCGTGTTATTTTTTTTGCGTTG
TTCGTTTCCCTCGAGGCTTTTTTTGTATTTCCCTTGCTTTTGACCCTGGG
CCAGATGTTCTGACGATGAGCTCACGTGAGAAACCACCGCAAACACAAAA
ACAATAAGAGCCTCTCGGCCTCACGAGACCCCAGAAATCAGGTTCTACCC
CCAGGTACTCGTGGCGAATCGAGACGTACAAGCAGTAGAAAGAAACAGCG
CCACCGCCTCTTCGGAAAAACGAACGGTCCACGTGCCGAAGATACGGGCT
CTTGTGTTCGCGCGCGTTTGTCTTGTCACACCCAAGTTCTCACAAAATAT
TCCGGTCAGGAGCAGCAGCAGCGGCGGCCCGCCGCCCGCCATGGCTGGCC
GGCCTCCCCCCACGTGGGTTAGCTAGGCGTTTCTCATCTGATTTCTTCAT
GACAGCTTATTCCGCCGCGTTCCGACAGTTACATATGTATGCACGCGCGC
ACACGCCCTCACCCCGTGCAGGCGTCCGTGTTGCCCTCATAATATCTAAT
TATGTCCCGAAAAGTCTTGGTGCGGTGACCTAACTACGTAACAACCGCAA
CCACCACCCACCCACCCACCCACCCGGCCGCCGCCGCCGCCGCCGCGTCT
TTAAATGACGTTCACAGATGGAGGCAGTGAAGTCCGCTCTCATGGGAAAG
GGGAAGGCCCCGAAGGCGACCCCCACCGGGGGGAAAGGAGGAGGAGGAAA
GGCCGCGAAGGCGAAACCCGAGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9446:1497..4319-

>mRNA_Ecto-sp9_F_contig9446.17598.1 ID=mRNA_Ecto-sp9_F_contig9446.17598.1|Name=mRNA_Ecto-sp9_F_contig9446.17598.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1104bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9446:1497..4319- (Ectocarpus species9 EcSCA_722f female)
AGGTTTCACCCGCTGTGCGGAGCGGTTCTTACGGCCGAGACGCAGTCGAG
CAGCGAGGGCAAGGGCTGGAAGGGCCTTGGCGCGGACATGACCATCCAGT
GCGACGAGCACAAGCACAAGAGGTTTCACCCGCTGTGCGGAGCGGTTCTT
ACGGCCGAGACGCAGTCGAGCAGCGAGGGCAAGGGCTGGAAGGGCCTTGG
CGCGGACATGACCATCCAGTGCGACGAGCACAAGCACAAGGCGGACGAGC
CCTGCGCAAAGTGCGGTGGAATCGACGGCGAGTTGGTGGGCTGCGCAAGG
TGCCCGACCTACTACCACAAGGCGGACGAGCCCTGCGCAAAGTGCGGTGG
AATCGACGGCGAGTTGGTGGGCTGCGCAAGGTGCCCGACCTACTACCACA
AGGGCTGTCACGACCCCCCAATCCCCGACGATACGGGCGAGAAATGGTGG
TGCGCTACGTGTACGGCGGCGTTGGCCATGGGCGGGGGGGAGTCTTCGGA
AGACGACGAGGAGCAGGATGAGGAGGAAGAGGAAGAGCAACAGGAGCAAG
AAGAGGGGGTGCAGGAAGAGGAGGAGGATGATGACCCGGAGCCCCCCACT
CCCGGTAGCCCGGAGCATATCGGTTGGATGAAGAGGATGCAGAAGAAGGG
CTGTCACGACCCCCCAATCCCCGACGATACGGGCGAGAAATGGTGGTGCG
CTACGTGTACGGCGGCGTTGGCCATGGGCGGGGGGGAGTCTTCGGAAGAC
GACGAGGAGCAGGATGAGGAGGAAGAGGAAGAGCAACAGGAGCAAGAAGA
GGGGGTGCAGGAAGAGGAGGAGGATGATGACCCGGAGCCCCCCACTCCCG
GTAGCCCGGAGCATATCGGTTGGATGAAGAGGATGCAGAAGAAGATGGAG
GCAGTGAAGTCCGCTCTCATGGGAAAGGGGAAGGCCCCGAAGGCGACCCC
CACCGGGGGGAAAGGAGGAGGAGGAAAGGCCGCGAAGGCGAAACCCGAGA
TGGAGGCAGTGAAGTCCGCTCTCATGGGAAAGGGGAAGGCCCCGAAGGCG
ACCCCCACCGGGGGGAAAGGAGGAGGAGGAAAGGCCGCGAAGGCGAAACC
CGAG
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