mRNA_Ecto-sp9_F_contig942.17571.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig942.17571.1
Unique NamemRNA_Ecto-sp9_F_contig942.17571.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig942.17571.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSL1_ECTSI)

HSP 1 Score: 377 bits (969), Expect = 5.860e-129
Identity = 198/206 (96.12%), Postives = 203/206 (98.54%), Query Frame = 1 
Query:  532 MSVKDAAEAKLKKQETQLVVVEHATRICSVLCNEMLGDLIDVIGEVQADARQRKFNRQQHVKSTAKELLDKLGGALTFHAERKSSAQGTMAATAGQIAHNRKFFGPNAGATKQAESSYAEMEGYAQDSSDKILAMVDQTRKMLAKMEVDLSREDMDGLMEAESKHILQGREDLTNPNGDKIKPDTLRNALRDARVEVSSTGECRLM 1149
            MSVKDAAEAKLKKQ+TQLVVVEHATRICS+LCNEM GDLIDVIGEVQADARQRKFNRQQHVKSTAKELLDKLGGALTFHAERKSSAQGTMAATAGQIAHNRKFFGPNAGATKQAESSY EMEGYAQDSSDKILA+VDQTRK+LAKMEVDLSREDMDGLME ESKHILQGREDLTNPNGDKIKPDTLRNALRDARVEVSSTGECRL+
Sbjct:    1 MSVKDAAEAKLKKQKTQLVVVEHATRICSLLCNEMFGDLIDVIGEVQADARQRKFNRQQHVKSTAKELLDKLGGALTFHAERKSSAQGTMAATAGQIAHNRKFFGPNAGATKQAESSYVEMEGYAQDSSDKILAIVDQTRKLLAKMEVDLSREDMDGLME-ESKHILQGREDLTNPNGDKIKPDTLRNALRDARVEVSSTGECRLI 205
[Close]
BLAST of mRNA_Ecto-sp9_F_contig942.17571.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL75_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 1.160e-43
Identity = 82/92 (89.13%), Postives = 88/92 (95.65%), Query Frame = 1 
Query:  874 ESSYAEMEGYAQDSSDKILAMVDQTRKMLAKMEVDLSREDMDGLMEAESKHILQGREDLTNPNGDKIKPDTLRNALRDARVEVSSTGECRLM 1149
            +SSYAEMEGYAQDSSDKILA+VDQTRK+LAKME+DLSREDMD LME ESKHILQGREDL NPNGD+IKPDTLRNALRDARVEVSSTG+CR M
Sbjct:   12 QSSYAEMEGYAQDSSDKILAIVDQTRKLLAKMEMDLSREDMDELME-ESKHILQGREDLINPNGDEIKPDTLRNALRDARVEVSSTGDCRPM 102
[Close]
BLAST of mRNA_Ecto-sp9_F_contig942.17571.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMC5_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 2.810e-15
Identity = 45/49 (91.84%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:  343 VETTKDEVQTAADAVEDATNAVIGCHLNSTGSKEDALRSLVSSLQQRQG 489
            VETTKDEVQ AADAVEDATNAVIG HLNSTGSKEDALRSLVSSLQQ  G
Sbjct:    4 VETTKDEVQAAADAVEDATNAVIGDHLNSTGSKEDALRSLVSSLQQTLG 52
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig942.17571.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized5.860e-12996.12protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.160e-4389.13protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.810e-1591.84protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig942contigEcto-sp9_F_contig942:655..8670 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-04_000420.1
Exons9
Model size1152
Cds size1152
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931023.452631-CDS-Ecto-sp9_F_contig942:654..8641622931023.452631-CDS-Ecto-sp9_F_contig942:654..864Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig942 655..864 +
1692278997.504337-CDS-Ecto-sp9_F_contig942:654..8641692278997.504337-CDS-Ecto-sp9_F_contig942:654..864Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig942 655..864 +
1622931023.4737294-CDS-Ecto-sp9_F_contig942:1507..16391622931023.4737294-CDS-Ecto-sp9_F_contig942:1507..1639Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig942 1508..1639 +
1692278997.5136352-CDS-Ecto-sp9_F_contig942:1507..16391692278997.5136352-CDS-Ecto-sp9_F_contig942:1507..1639Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig942 1508..1639 +
1622931023.4877913-CDS-Ecto-sp9_F_contig942:2249..23871622931023.4877913-CDS-Ecto-sp9_F_contig942:2249..2387Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig942 2250..2387 +
1692278997.523162-CDS-Ecto-sp9_F_contig942:2249..23871692278997.523162-CDS-Ecto-sp9_F_contig942:2249..2387Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig942 2250..2387 +
1622931023.5082257-CDS-Ecto-sp9_F_contig942:3339..34961622931023.5082257-CDS-Ecto-sp9_F_contig942:3339..3496Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig942 3340..3496 +
1692278997.5325086-CDS-Ecto-sp9_F_contig942:3339..34961692278997.5325086-CDS-Ecto-sp9_F_contig942:3339..3496Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig942 3340..3496 +
1622931023.5316248-CDS-Ecto-sp9_F_contig942:3967..40471622931023.5316248-CDS-Ecto-sp9_F_contig942:3967..4047Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig942 3968..4047 +
1692278997.54492-CDS-Ecto-sp9_F_contig942:3967..40471692278997.54492-CDS-Ecto-sp9_F_contig942:3967..4047Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig942 3968..4047 +
1622931023.5491328-CDS-Ecto-sp9_F_contig942:5473..55651622931023.5491328-CDS-Ecto-sp9_F_contig942:5473..5565Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig942 5474..5565 +
1692278997.558288-CDS-Ecto-sp9_F_contig942:5473..55651692278997.558288-CDS-Ecto-sp9_F_contig942:5473..5565Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig942 5474..5565 +
1622931023.5660148-CDS-Ecto-sp9_F_contig942:6108..61751622931023.5660148-CDS-Ecto-sp9_F_contig942:6108..6175Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig942 6109..6175 +
1692278997.5703084-CDS-Ecto-sp9_F_contig942:6108..61751692278997.5703084-CDS-Ecto-sp9_F_contig942:6108..6175Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig942 6109..6175 +
1622931023.5815723-CDS-Ecto-sp9_F_contig942:6988..71241622931023.5815723-CDS-Ecto-sp9_F_contig942:6988..7124Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig942 6989..7124 +
1692278997.5814812-CDS-Ecto-sp9_F_contig942:6988..71241692278997.5814812-CDS-Ecto-sp9_F_contig942:6988..7124Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig942 6989..7124 +
1622931023.5935693-CDS-Ecto-sp9_F_contig942:8530..86701622931023.5935693-CDS-Ecto-sp9_F_contig942:8530..8670Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig942 8531..8670 +
1692278997.5950453-CDS-Ecto-sp9_F_contig942:8530..86701692278997.5950453-CDS-Ecto-sp9_F_contig942:8530..8670Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig942 8531..8670 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig942.17571.1prot_Ecto-sp9_F_contig942.17571.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig942 655..8670 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig942.17571.1

>prot_Ecto-sp9_F_contig942.17571.1 ID=prot_Ecto-sp9_F_contig942.17571.1|Name=mRNA_Ecto-sp9_F_contig942.17571.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=384bp
MGLGGGGGATSFWQESTRTARKELPKAPSSPVQPQRGAGGPSCANDGPGG
GGQVVASEEASFWAALEVCREALKKVSFCRREEQWLELQREAVKERMDET
EEDDQMALTEHQTKVETTKDEVQTAADAVEDATNAVIGCHLNSTGSKEDA
LRSLVSSLQQRQGQLGGCDPLAARQRAMSVKDAAEAKLKKQETQLVVVEH
ATRICSVLCNEMLGDLIDVIGEVQADARQRKFNRQQHVKSTAKELLDKLG
GALTFHAERKSSAQGTMAATAGQIAHNRKFFGPNAGATKQAESSYAEMEG
YAQDSSDKILAMVDQTRKMLAKMEVDLSREDMDGLMEAESKHILQGREDL
TNPNGDKIKPDTLRNALRDARVEVSSTGECRLM*
back to top

mRNA from alignment at Ecto-sp9_F_contig942:655..8670+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig942.17571.1 ID=mRNA_Ecto-sp9_F_contig942.17571.1|Name=mRNA_Ecto-sp9_F_contig942.17571.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=8016bp|location=Sequence derived from alignment at Ecto-sp9_F_contig942:655..8670+ (Ectocarpus species9 EcSCA_722f female)
ATGGGGCTAGGCGGCGGCGGCGGAGCCACCTCGTTCTGGCAGGAATCTAC
TCGCACCGCTCGCAAGGAGCTACCCAAGGCCCCCTCCTCCCCCGTCCAGC
CGCAGCGGGGGGCGGGGGGCCCGTCGTGTGCGAATGATGGACCTGGGGGG
GGGGGTCAGGTCGTTGCTAGCGAGGAAGCATCGTTCTGGGCAGCGCTCGA
AGTCTGCAGGGTGCGTCGGTCGATGTTGCCGGGGGGGAGGGGGCTCAGCA
GGGGGAAGGGGGGGGGGGGGGACTCTTGTTTTGCATGCCTGAGTTGTTAG
ACCATTGACTACACGTCCTCGGGAGGACGAGGGCAGTCGATAGTGCATCT
GTTGCTGTTGTTGTTGTTGTCTTGAAATGTGTAGCCGTTCCGGTGTCTGC
TCACACCAGATGCCTTGCGATAGCCGTATTACCGGTGTAACTGACGCGGG
CGCCTTCCGTGGTGACAGGCAACTACCCCCATAAAGGGACGTTTCTAGAA
ATCAAGACACGGCTTTGTACGTTCCCATTCAACCATGCTGATGGCAATTC
TCGCGAACTCGATGCTGGTCCGTTTTTTATTTTTTTGTGTATTCTAGAAT
TTAAACCAAAAAAATACTGTTCCACTTCAGCCTTGTTGATGACAACCCCC
ACGATCTCGATGCTACACCACCCACCCCACAACTTCACATCACCAATGCA
AACTGAATTAAAAAACATACACGATACCTGCATGCCCNNNNNNNNNNTCT
CGTATGTTAACCCCAAAAATTTCTGTTTTTTTTTTGTTTTTTTTTTGTAA
ACCCCCCCTAACTCGATGCTGCCCCCCCCCCCCCCCATTTTTTTTTTCAA
AAGGAGGCCTTGAAGAAGGTATCCTTCTGTCGCAGGGAGGAGCAGTGGCT
GGAGCTGCAAAGGGAGGCCGTGAAGGAGAGGATGGACGAGACAGAGGAAG
ACGATCAGATGGCCCTAACGGAGCACCAGACGAAGGTATGCATAAGAAGA
AAAGATGCATAAGGTAGTAAGAAAATGAGATGGCCCTTGCGGAGGGAGCA
CCAGACGAAGACACAAAAAAAAGTATCGTGTTTCTATTGACACATTGTTT
GTTTCTTTGAAACACATTTTGTTATTGTCTGTCTCTATTGACACACAATT
GGTTTTGTTTGTTTCTATTGACATACAATTTGTTTGCTTGTTTCGATTGA
AACACAATTTGTTTTTTTTGTGTCTATTGACATACAATTTGTTTCCCTTA
ATACTGTACCAGCGTAGGAGGTAAGGTAGGGCAAAAGCACACCGAAAAGC
TCCGGCTGACACGATGGTAAAAACGGATCGTTCGTGAAGCGCGACAACAA
CGATGACAACAGGAGCAACAACAAACGGGCATAGAAGTTGCTCAGCATAG
ACCGGAACGATTACGATTTGTATTGTCAATAACGACAACGACAACAACAA
CAACAACAACAACAGCAATAGCAATAGCAACAGCAACAACAAACATAGAA
GTGTTGCTGAGCATAGACCGGAACAATTTTGATTGACAACAACGACAACA
ACAACAGCGACAACAACAACAACAACAACGGTCGGTATGTGTCAGGTCGA
GACCACGAAGGATGAAGTGCAGACCGCCGCCGATGCTGTCGAAGACGCCA
CTAACGCTGTCATCGGTTGCCACCTCAACTCGACCGGGTCTAAAGAAGAC
GCCCTTCGGTCCCTGGTCTCTTCCCTGCAGCAGGTCAGTCAGCGTTAATA
CTTTGTTCATTAAACGCAACTTTTTGACTTTTTCGAGGGGAAGAAAAGTC
AAGCTCTACATACTTTTGTCCCTGTGCTGCTTGCCTTTTTCGAAGCGAAG
ACAAGTCAAGCCCTATATATTTTGTTCATGTACTGCTTGCCTTTTCTGAG
TGAAGAAGCGTTGTTAAGCACGTTCCAGCAGTGGTTGGGCTGTTGCCTGC
AGCAGGTCAGTCAGCGTTAATACTTTGTTCATTAAACGCAACTTTTTGAC
TTTTTCGAGGCGAAGAAAAGTCAAGCTCTACATACTTTTGTCCCTGTGCT
GCTTGCCTTTTTCGAATCGAAGAAAAGTCAAGCTCTATATTTTTTTGTTC
ATGTGCTGCTTGCCTTTTCTGAGTGACGAAGCTTTCCAGCATAGCAATCG
ATGGTGCAATAGTTGGGCTGTTGCCTGCAGCAGGTCAGTCAGCCTTTTTT
TTTTTGTTTTTCGTGTGCTGCTTGTCTTTTTCGACGCAAAGGAGCCAAGC
ACGTTCCTGCACAGCCCTCGAAAGTAACGTCAGCGGCACTATCACGCCCA
CAGCCAACAATCCAACACATCCACAACACATCCGCAACCATGACCGCCAC
AACAACCATGACAACATGTACCGGCTCGTCGACCAACAACACTATTAATA
CTAGTGGTAAATCCACAACACCAACAACAGTAACACAACTATGCACCTAC
CACACCCGGCCGGTCGTTACCCTAGAGGCAAGGGCACCACCACAACAACA
ACCATCGCAACATGTTACCGGCTCGCCAACCAACAACAACCCAACAATTC
ACCTATCACGCCCGGCCGGTCGTTACCCTCGGGGCAAAGGCACCACGACA
ACAACAACCATCGCAACAGCACCGGCTCGTCAACCAACAATATCACAACA
ATTCACCTATCACTACCGACCGTTCGTTACCCCAGAGGCAAGGCCAGCTG
GGGGGTTGCGACCCGCTGGCGGCGCGGCAGAGAGCCATGAGCGTCAAAGA
CGCCGCCGAGGCCAAGCTCAAGAAGCAGGAGACGCAGCTGGTCGTTGTCG
AGCACGCCACTAGGATCTGCTCGGTACTTTGCAACGAGATGCGTGAGTAC
AGGCATGTCGCTTATTTATTTATTTAATTTTTCTTAGTATGACACAACGA
ATCCATCTCTATTTATAGCAAGATGGATTTTTTTGTTCGAAGGGGCGGGG
CGGCACGTGACGCGGCAGCGTTTATCTCAAGAACATGGTAGATACTTGGT
GTTCCCGTTTGGAGAATTTTCTTTATTCATTCTTCTTTTTCTTTTGATAT
CTAGACGTGTGAACCCTTTTTGGGTAGTTGGCCTGTGACCACGGAGCAGC
CGCCCGCTTTAGTTGGACCGGCACGGCTATTATAAGGTATAGTACTGAGG
GGAGACCGAAACGACTTTTCATGTGAAGACAACAACGACAGCACAACATC
AACAACCACAACCTCAACCACGTAGCTATGGCACGACAACAAGTTCTTCT
TATTGTTTTTTTTTTAAGTGTTTCCTGTCCATTTTGTTTTTCGCGATTTC
GTTTTGACAACAGTCGGCGATCTGATAGACGTCATTGGCGAAGTCCAGGC
AGACGCCCGCCAAAGAAAATTCAACCGGCAACAGCACGTGAAGGTAAGCG
TCGTCCCCAATTTTGCTCTCTCTCTCATCACGTCTCAATGTTTGGCCTAT
CACGCCAAGCCACACACCACTGCATTGCTGTGTTCGAAAGACCAAGGGTC
ATTCGGATACAATATGTGATTATTGCAATGGTCCCGTATTTTTAGCCGGA
GTTGTGCTTGAGTTTCGGCAATGGTCCTACGTTTCTAGCCGGAGTTGTGC
TTCAGTTTCAGCTGAAGCCACTGTGTTTGTAATACGCAAACAGCGCTGGG
CCCTGTATTGTGCCGGTCGAATAGTAGTAATAGTGCCGGGTGCTCGGTAT
TGTGCCGGTGTTTTCGGCTCGCACACACTGGAATACGTTGAATAGTTCCG
GTGTCCGGTATATGTGCCTGTCAACGGTATAGTGCCGGTCAAAGCTCTGG
ACACGAGTGTCCACTCCCATACTAAAACCTGTATGTTGTGAATAGTGCCG
GTAAAATCTCTGGACACGAGTGTCCACTCCCATACTACAACCTATATGTT
CTGAATGGTGCCGGTAAAATCTCTGGCGAGTGTCCACTCCCATACTACAA
CCTATATGTTCTGAATTGTGCCGGTCAAATCTCTGGACACGCACCGGCAC
CATACAGGGCCCAGTACTGCACTTGCTGGTTGCGTGCACACCAAACGAGA
AAAGAGGTGCGGATACGTTGTAACCGCCAATCTCAAGCCTGACCCCGTCT
GGGAGACACGGGAACTTGTCAGGGGCGACCCGATAGCGGTCGAAATCGAC
CCACCCACACACCCCGTCCCCCCGCGCGCACGGGTATTATTTTTCCACGT
GACAGGCGTTCTCTGCTTGCGTGTTTGTGTCTGCAGGCTATTATTTGGCG
ATGAGCTACTGCTGCAGCAACGTGTGAAACAACAACAATCACAGCACTGC
ACGCAATAGCAACGTGTCTCCATTTTCCAACCCCGAACCAGCACGTGTTC
CCCCGGGTTTTCAAACTCTGATCTGCAATCCTCCAACACTCCCCGAAACT
GCTCCCCCAAATGCACAGAGCACTTCGAAGGAGCTTCTGGACATGCTGAG
AATATTTCTGCCTTTCCGAACCCTCGACTCAGTACGTATTCCGCCACGTC
CATGAACTCTTCGTGCATGCCGTACAGTAGTCCTCTAACTCTCCCCGAAG
CTTCTACACAGGGCACCGCGAAGGATTTTCTGGGAACAGATCTGCCTTTC
TCGAACCCTCGAACTACCAAATACGTATTCCACCGCGTTTTAAAACTCCC
ACCATACATATTATTTCCCCGAAACTTCTGCACAGAGCACGGCGAAGGAG
CTTCTGGGAACATGTCTGCCTTTTCGAACCTCGAATTACTTATGGTATCT
ATTCCGCCGCGTTTTTGAACTCTTCGTGCATACCGTAGTCCTCTAACTCT
CCCCGAAACTGCTGCGCAGAGCACCGCGAAGGAGCTGCTGGACAAGCTGG
GGGGCGCCTTGACCTTTCACGCCGAGAGGAAGTCGTCCGCTCAGGGAACC
ATGGCAGCAACGTGAGTTAAACGATGGCTGGAACAACAGCCATGCAGAAG
GGCATTTACCGCCCCCGCCCCCCCCCAATGGCATGGAAGTACACAACTGG
GCTGGGAAAAGTAGAAGGAAGTGCAGAGAGATGTTTGATGCATGGAATAG
CCAGGAGAAGACGGTAGCTGTACCGGGGCGTAAGAAGGGGGTTGAAAAGG
CGGCAGGCGATATCGATAGGATAGATGGACTACATCGGGAAACATTTTTG
AGCCACCTTTGGCAAAGTAGGAAGGAACGATTGGCCGTCGGCGATAGGTC
CTGTGGGAAACACGCCCCGTCCTCTCGAGGGCGCGTGGTCAATGGTCTAA
CCGCTAAGACATGCGAAACATGAGGTTGTTGCTCGATTGCTCCAAAACCA
AGGGGGTTCCGGTACCGACAAAAAGCTGGTTCGGAGGCGACTGGTCCATA
TATTTCCGCGAGCATGTATACACACGTATCGGTAGGTTTCTTGCCTTTCT
TATACCATCCATCCGAAATGGTTCTTTTTTTCCCCTCGTCAACGACGAAC
ACAGGGCCGGCCAGATTGCTCACAACCGCAAGTTTTTCGGGCCCAATGCC
GGCGCGACCAAGCAGGCAGAGGTGAGTATGCACGAGCATGGAAGCGGGAT
ATCTTGTACCTTTTTTGTGGGTTTGCTGTGCTTCCGCGCGCGCTCGCTGT
CTTCGACAGGCAGAGATGATGTGTACCTTTGTATAGCCTCAGTGTGGTTC
TGCCGCTCGCTGTCTTCGAATGCAGAGATGAGGTGTACCTTTGCTTTGCC
TCGGTGTGGTTCTGCCGCTCGCCGTCTTCGATAGGCAGAGATGAAGTGTA
CCTTTGTATAGCCTCAGTGTGCTTCTGCCGCTCGCTGTCTTCGGCAGGCA
GAGATGACAGGACGGCGCAGAGAAGATTTGTGTCTTTTTTTCTTTTGTTG
GCCTCGGCGAGGTTCAGCAGTTGGCTGTCTTAGGCGTAGCCTACTTCCCG
CGGGCGAACGTCAAACACGAGTTTCAGAAAGAGATGTACGAAGAAAATAC
CCAGCATGTACACGAGAAAGAGGTGTAAGGTGTATCACCCGAAAGCTCCC
GATTTCCAACGTGCTAGGCCTGTTCACTCATTCACACGTGTGTGGAGTTT
ATGGTTTGCGGAAGGACAACAAGAACTAATATTGTGTCAATTTCTCCTTA
ATATGGCTGCTGATGGTCTGCGGTAGGACACACAATAACTGATTTTTTCG
TCAATTGCTTCCAAACGTGGCTGCTGTGTGTGGTGCAGTCGATCTGCGGA
AAGACACAATAACCGACAAAAGTCGATTGCTTCCTATCGTGACTGCTGTG
TGTGGTGTGCAGTCGATCTGCGGAAGACACAATAACTGACACAGTCAACT
TCTTCCAATCGTGACTGCTGTGTGTGGTGTGCAGTCGAGCTATGCCGAGA
TGGAGGGCTACGCTCAGGATTCGTCGGACAAGATTTTGGCTATGGTCGAC
CAAACCCGCAAGATGCTAGCGAAGATGGAGGTGGACTTGTCACGTGAAGA
CATGGATGGGCTCATGGAAGGTCGGCCAGTCTTATTTCTTACAGTAAGAC
ATAACAAAGTCTCCTCTTCCACAGATAAGAGTCTGGGATAGACTAGATAT
GAATTAATTCATTGCGTCAGCGTTTGTTTGGACGTTTGCTTCATTTCTGG
AAACTGTTCTTCGAGCTGTACTATTTTACCATAACGAGGAAAAGGGTGTA
CCCGAAATGTGTAGCCACGCTAAACATATGAATATATCTAGAATCGACGA
GGCTAGAAAAGCGTCCGGCGGTAAAAGGAGGATGACTTATATTCACGCAC
GTTGTTCGAACCCACAATTTTCCCAATCGCACAGCAGGACAATCCTTTTA
CTCTCTTTTGGCAAAGTTCAATATTGTTGTTTTTGTTGTTGTTGTTGTCT
TCACTTAAAATCGTGTCGGTTGCTAATCCCAAAATGTAGCAAAGACTCGG
TCCGTGGTCACAAAAATGTTAGAGCCATCAGAAGATCTAAAGAACACGCA
AACCAGCAAGAAAGGGGTGCACAAGCCCGAAGAGGTACACCTACATCCCT
ACAGCACGGTTGCGTGCCCAAAACTGAACTACCCGTCCACACACTACATT
CGACTACAGCATCATCACCCCCCTGCCCTACACTTTACCAAAATGAACGT
TGTCGACTTCAGCGTACTGCTGTCTGGAGTGCTGCTTGTACAATAACACC
ATGGTAGGCATGGTACAAGTTCAGGGCACGCAGCTGCTGTCTGAAGTGCT
GTCAGAATGCGTCCTTGGACATACAGTGAAAAAGTACAACCAACCAAAGC
CATCATTGCAATTGACAATCAATCACCGAATCTATCCCCGATCATCTGTT
TTAGACACAGCAGTGTAAACATCGACACTGGCTAGGGATCGTTCCACATT
GAAGGGGTCTTCCACGATGCAGGTACACAATAAAGGCACCGAGTATTTAT
CCATCGGTTAGTGCAGAGCCGAACGGGTTCTTCGTAGGGTTATTTTCCCC
GTGTAGCAGATACTTTGGCGAGTTGCGTGATGCTTTCCGAAATCCTACCA
GCAAAGTACAAACCCTCACAGACCACAACCTTGACGTCTTTCCTTACCCT
TTTTTTTCCCTGTTGTGTCCTTTCGGATTTCGACGCCTCTTTCCAACGTT
GGAAGCAGACAGCAAGCACATTTTTGTGACGCTTCCGAACCCCTACAATA
CTCGGAATAAACAATAAACAAACCCTCACAGACTACAACCTTGACGTATT
TCTACGCCCCCCCCTCCCCCCCTTTTTTGTACCCTTTTCGAGTTTCGGTA
TGTCTCTTGCCGACGTTGAAATCAGCCAGCAAACAAAACCTCACAGAACA
CAACCTTGACATCTTTCCCCGCCCTTTTTATTTACCCTTTCTTTCCAATT
TCGATGTCTTATGCCGACGTTGAAAGCAGAGAGCAAACACATCCTACAGG
GAAGGGAGGACTTGACCAATCCGAACGGCGACAAAATCAAGCCCGACACG
CTTCGGAATGCTCTGCGGGACGCTCGGGTGGAAGTGTCAAGCACGGGTGA
ATGCCGACTCATGTAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig942:655..8670+

>mRNA_Ecto-sp9_F_contig942.17571.1 ID=mRNA_Ecto-sp9_F_contig942.17571.1|Name=mRNA_Ecto-sp9_F_contig942.17571.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2304bp|location=Sequence derived from alignment at Ecto-sp9_F_contig942:655..8670+ (Ectocarpus species9 EcSCA_722f female)
ATGGGGCTAGGCGGCGGCGGCGGAGCCACCTCGTTCTGGCAGGAATCTAC
TCGCACCGCTCGCAAGGAGCTACCCAAGGCCCCCTCCTCCCCCGTCCAGC
CGCAGCGGGGGGCGGGGGGCCCGTCGTGTGCGAATGATGGACCTGGGGGG
GGGGGTCAGGTCGTTGCTAGCGAGGAAGCATCGTTCTGGGCAGCGCTCGA
AGTCTGCAGGATGGGGCTAGGCGGCGGCGGCGGAGCCACCTCGTTCTGGC
AGGAATCTACTCGCACCGCTCGCAAGGAGCTACCCAAGGCCCCCTCCTCC
CCCGTCCAGCCGCAGCGGGGGGCGGGGGGCCCGTCGTGTGCGAATGATGG
ACCTGGGGGGGGGGGTCAGGTCGTTGCTAGCGAGGAAGCATCGTTCTGGG
CAGCGCTCGAAGTCTGCAGGGAGGCCTTGAAGAAGGTATCCTTCTGTCGC
AGGGAGGAGCAGTGGCTGGAGCTGCAAAGGGAGGCCGTGAAGGAGAGGAT
GGACGAGACAGAGGAAGACGATCAGATGGCCCTAACGGAGCACCAGACGA
AGGAGGCCTTGAAGAAGGTATCCTTCTGTCGCAGGGAGGAGCAGTGGCTG
GAGCTGCAAAGGGAGGCCGTGAAGGAGAGGATGGACGAGACAGAGGAAGA
CGATCAGATGGCCCTAACGGAGCACCAGACGAAGGTCGAGACCACGAAGG
ATGAAGTGCAGACCGCCGCCGATGCTGTCGAAGACGCCACTAACGCTGTC
ATCGGTTGCCACCTCAACTCGACCGGGTCTAAAGAAGACGCCCTTCGGTC
CCTGGTCTCTTCCCTGCAGCAGGTCGAGACCACGAAGGATGAAGTGCAGA
CCGCCGCCGATGCTGTCGAAGACGCCACTAACGCTGTCATCGGTTGCCAC
CTCAACTCGACCGGGTCTAAAGAAGACGCCCTTCGGTCCCTGGTCTCTTC
CCTGCAGCAGAGGCAAGGCCAGCTGGGGGGTTGCGACCCGCTGGCGGCGC
GGCAGAGAGCCATGAGCGTCAAAGACGCCGCCGAGGCCAAGCTCAAGAAG
CAGGAGACGCAGCTGGTCGTTGTCGAGCACGCCACTAGGATCTGCTCGGT
ACTTTGCAACGAGATGCAGGCAAGGCCAGCTGGGGGGTTGCGACCCGCTG
GCGGCGCGGCAGAGAGCCATGAGCGTCAAAGACGCCGCCGAGGCCAAGCT
CAAGAAGCAGGAGACGCAGCTGGTCGTTGTCGAGCACGCCACTAGGATCT
GCTCGGTACTTTGCAACGAGATGCTCGGCGATCTGATAGACGTCATTGGC
GAAGTCCAGGCAGACGCCCGCCAAAGAAAATTCAACCGGCAACAGCACGT
GAAGTCGGCGATCTGATAGACGTCATTGGCGAAGTCCAGGCAGACGCCCG
CCAAAGAAAATTCAACCGGCAACAGCACGTGAAGAGCACCGCGAAGGAGC
TGCTGGACAAGCTGGGGGGCGCCTTGACCTTTCACGCCGAGAGGAAGTCG
TCCGCTCAGGGAACCATGGCAGCAACAGCACCGCGAAGGAGCTGCTGGAC
AAGCTGGGGGGCGCCTTGACCTTTCACGCCGAGAGGAAGTCGTCCGCTCA
GGGAACCATGGCAGCAACGGCCGGCCAGATTGCTCACAACCGCAAGTTTT
TCGGGCCCAATGCCGGCGCGACCAAGCAGGCAGAGGGCCGGCCAGATTGC
TCACAACCGCAAGTTTTTCGGGCCCAATGCCGGCGCGACCAAGCAGGCAG
AGTCGAGCTATGCCGAGATGGAGGGCTACGCTCAGGATTCGTCGGACAAG
ATTTTGGCTATGGTCGACCAAACCCGCAAGATGCTAGCGAAGATGGAGGT
GGACTTGTCACGTGAAGACATGGATGGGCTCATGGAAGTCGAGCTATGCC
GAGATGGAGGGCTACGCTCAGGATTCGTCGGACAAGATTTTGGCTATGGT
CGACCAAACCCGCAAGATGCTAGCGAAGATGGAGGTGGACTTGTCACGTG
AAGACATGGATGGGCTCATGGAAGCAGAGAGCAAACACATCCTACAGGGA
AGGGAGGACTTGACCAATCCGAACGGCGACAAAATCAAGCCCGACACGCT
TCGGAATGCTCTGCGGGACGCTCGGGTGGAAGTGTCAAGCACGGGTGAAT
GCCGACTCATGTAACAGAGAGCAAACACATCCTACAGGGAAGGGAGGACT
TGACCAATCCGAACGGCGACAAAATCAAGCCCGACACGCTTCGGAATGCT
CTGCGGGACGCTCGGGTGGAAGTGTCAAGCACGGGTGAATGCCGACTCAT
GTAA
back to top