mRNA_Ecto-sp9_F_contig9417.17570.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9417.17570.1
Unique NamemRNA_Ecto-sp9_F_contig9417.17570.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9417.17570.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9417contigEcto-sp9_F_contig9417:2096..2507 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size412
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9417.17570.1prot_Ecto-sp9_F_contig9417.17570.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9417 2129..2452 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931023.2440603-UTR-Ecto-sp9_F_contig9417:2095..21281622931023.2440603-UTR-Ecto-sp9_F_contig9417:2095..2128Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9417 2096..2128 +
1692278997.43446-UTR-Ecto-sp9_F_contig9417:2095..21281692278997.43446-UTR-Ecto-sp9_F_contig9417:2095..2128Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9417 2096..2128 +
1622931023.2861145-UTR-Ecto-sp9_F_contig9417:2452..25071622931023.2861145-UTR-Ecto-sp9_F_contig9417:2452..2507Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9417 2453..2507 +
1692278997.4626393-UTR-Ecto-sp9_F_contig9417:2452..25071692278997.4626393-UTR-Ecto-sp9_F_contig9417:2452..2507Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9417 2453..2507 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931023.2685263-CDS-Ecto-sp9_F_contig9417:2128..24521622931023.2685263-CDS-Ecto-sp9_F_contig9417:2128..2452Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9417 2129..2452 +
1692278997.4524293-CDS-Ecto-sp9_F_contig9417:2128..24521692278997.4524293-CDS-Ecto-sp9_F_contig9417:2128..2452Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9417 2129..2452 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9417.17570.1

>prot_Ecto-sp9_F_contig9417.17570.1 ID=prot_Ecto-sp9_F_contig9417.17570.1|Name=mRNA_Ecto-sp9_F_contig9417.17570.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=108bp
MGRDGPARQNIDDVVSSVRSSQPFHVSHGRNLIIRGIQVVEQLRYSRVQQ
PACYSMEEQCCSLRKKFQSWKQRSVAFLCRPRASAPLTRCHVHLQGYHHA
GMRALLK*
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mRNA from alignment at Ecto-sp9_F_contig9417:2096..2507+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9417.17570.1 ID=mRNA_Ecto-sp9_F_contig9417.17570.1|Name=mRNA_Ecto-sp9_F_contig9417.17570.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=412bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9417:2096..2507+ (Ectocarpus species9 EcSCA_722f female)
CCCCCCCCCGTGCAAACACATCCCCATCCAGCAATGGGTCGAGATGGTCC
GGCTCGACAGAATATTGATGACGTTGTTTCGTCTGTTCGCAGTAGTCAGC
CCTTCCATGTGTCTCATGGACGAAACCTTATAATACGCGGGATACAGGTT
GTAGAACAGCTAAGGTACTCTAGAGTGCAGCAACCGGCTTGCTATTCCAT
GGAAGAACAATGCTGCTCTCTACGCAAGAAATTTCAATCTTGGAAGCAAA
GGTCAGTGGCTTTTCTGTGCCGCCCACGTGCCTCCGCCCCGCTGACCCGA
TGCCATGTCCATCTCCAAGGGTATCATCATGCCGGCATGCGCGCGTTGCT
AAAATAGGTCCCTCTCCACAATTCTCTCTATATTTCTCCCTCGTGCGGGT
TCGGACGACAGC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9417:2096..2507+

>mRNA_Ecto-sp9_F_contig9417.17570.1 ID=mRNA_Ecto-sp9_F_contig9417.17570.1|Name=mRNA_Ecto-sp9_F_contig9417.17570.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=648bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9417:2096..2507+ (Ectocarpus species9 EcSCA_722f female)
ATGGGTCGAGATGGTCCGGCTCGACAGAATATTGATGACGTTGTTTCGTC
TGTTCGCAGTAGTCAGCCCTTCCATGTGTCTCATGGACGAAACCTTATAA
TACGCGGGATACAGGTTGTAGAACAGCTAAGGTACTCTAGAGTGCAGCAA
CCGGCTTGCTATTCCATGGAAGAACAATGCTGCTCTCTACGCAAGAAATT
TCAATCTTGGAAGCAAAGGTCAGTGGCTTTTCTGTGCCGCCCACGTGCCT
CCGCCCCGCTGACCCGATGCCATGTCCATCTCCAAGGGTATCATCATGCC
GGCATGCGCGCGTTGCTAAAATAGATGGGTCGAGATGGTCCGGCTCGACA
GAATATTGATGACGTTGTTTCGTCTGTTCGCAGTAGTCAGCCCTTCCATG
TGTCTCATGGACGAAACCTTATAATACGCGGGATACAGGTTGTAGAACAG
CTAAGGTACTCTAGAGTGCAGCAACCGGCTTGCTATTCCATGGAAGAACA
ATGCTGCTCTCTACGCAAGAAATTTCAATCTTGGAAGCAAAGGTCAGTGG
CTTTTCTGTGCCGCCCACGTGCCTCCGCCCCGCTGACCCGATGCCATGTC
CATCTCCAAGGGTATCATCATGCCGGCATGCGCGCGTTGCTAAAATAG
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