mRNA_Ecto-sp9_F_contig9413.17567.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9413.17567.1
Unique NamemRNA_Ecto-sp9_F_contig9413.17567.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9413.17567.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRU2_ECTSI)

HSP 1 Score: 197 bits (502), Expect = 5.810e-64
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 1 
Query:    1 MSLFIDPDTLPPDWQGFVQVCFLMLVYGYILFSASNMISDGSELLLLVPSVAGIVGSVVLPVLGAVPDGAIVLFSGMGDDAQEELSVGVGALAGSTIMLLTIP 309
            MSLFIDPDTLPPDWQGFVQVCFLMLVYGYILFSASNMISDGSELLLLVPS+AGIVGSVVLPVLGAVPDGAIVLFSGMGDDAQEELSVGVGALAGSTIMLLTIP
Sbjct:    1 MSLFIDPDTLPPDWQGFVQVCFLMLVYGYILFSASNMISDGSELLLLVPSLAGIVGSVVLPVLGAVPDGAIVLFSGMGDDAQEELSVGVGALAGSTIMLLTIP 103
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BLAST of mRNA_Ecto-sp9_F_contig9413.17567.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DBN0_PHYNI)

HSP 1 Score: 156 bits (394), Expect = 3.370e-46
Identity = 81/103 (78.64%), Postives = 90/103 (87.38%), Query Frame = 1 
Query:    4 SLFIDPDTLPPDWQGFVQVCFLMLVYGYILFSASNMISDGSELLLLVPSVAGIVGSVVLPVLGAVPDGAIVLFSGMGDDAQEELSVGVGALAGSTIMLLTIPW 312
              FIDP  LP    G +QV FL  VYG++LF+ASN+ISDGSELLLLVPS+AGIVGSVVLPVLGAVPDGAIVLFSGMG +AQE++SVGVGALAGSTIMLLTIPW
Sbjct:    3 GFFIDPKDLPDGGYGLIQVLFLGAVYGFVLFNASNLISDGSELLLLVPSMAGIVGSVVLPVLGAVPDGAIVLFSGMGPNAQEQVSVGVGALAGSTIMLLTIPW 105
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BLAST of mRNA_Ecto-sp9_F_contig9413.17567.1 vs.
Match: Ca2:Cation (Antiporter family n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DBP1_THETB)

HSP 1 Score: 164 bits (416), Expect = 9.840e-46
Identity = 83/103 (80.58%), Postives = 94/103 (91.26%), Query Frame = 1 
Query:    4 SLFIDPDTLPPDWQGFVQVCFLMLVYGYILFSASNMISDGSELLLLVPSVAGIVGSVVLPVLGAVPDGAIVLFSGMGDDAQEELSVGVGALAGSTIMLLTIPW 312
            +LF+DP  LP D  G VQ+ FLM VYGY+LF++SNMISDGSELLLLVPS+AGIVGSVVLP+LGAVPDGAIVLFSG+G DAQ++LSVGVGALAGSTIMLLTIPW
Sbjct:   74 NLFVDPKELPQDGNGMVQLVFLMAVYGYVLFTSSNMISDGSELLLLVPSLAGIVGSVVLPILGAVPDGAIVLFSGLGPDAQKQLSVGVGALAGSTIMLLTIPW 176
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BLAST of mRNA_Ecto-sp9_F_contig9413.17567.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DCW0_HETAK)

HSP 1 Score: 163 bits (412), Expect = 3.010e-45
Identity = 83/103 (80.58%), Postives = 92/103 (89.32%), Query Frame = 1 
Query:    4 SLFIDPDTLPPDWQGFVQVCFLMLVYGYILFSASNMISDGSELLLLVPSVAGIVGSVVLPVLGAVPDGAIVLFSGMGDDAQEELSVGVGALAGSTIMLLTIPW 312
             LFIDPDTLP    GF+Q+ FL++VY YIL + SN ISDGSELLLL+PSVAGIVGSV+LPVLGAVPDGAIVLFSGMG DAQE+LSVGVGALAGSTIMLLT+PW
Sbjct:   33 DLFIDPDTLPEGTYGFIQLMFLLVVYAYILCTGSNYISDGSELLLLIPSVAGIVGSVILPVLGAVPDGAIVLFSGMGPDAQEQLSVGVGALAGSTIMLLTLPW 135
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BLAST of mRNA_Ecto-sp9_F_contig9413.17567.1 vs.
Match: Ca2: (cation antiporter family n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AKD8_PLAHL)

HSP 1 Score: 162 bits (410), Expect = 3.440e-45
Identity = 84/103 (81.55%), Postives = 93/103 (90.29%), Query Frame = 1 
Query:    4 SLFIDPDTLPPDWQGFVQVCFLMLVYGYILFSASNMISDGSELLLLVPSVAGIVGSVVLPVLGAVPDGAIVLFSGMGDDAQEELSVGVGALAGSTIMLLTIPW 312
            S FIDP  LP D  G +QV FL +VYGY+LF+ASN+ISDGSELLLLVPS+AGIVGSVVLPVLGAVPDGAIVLFSGMG DAQ+++SVGVGALAGSTIMLLTIPW
Sbjct:    3 SFFIDPKDLPDDSFGLIQVLFLGVVYGYVLFNASNLISDGSELLLLVPSMAGIVGSVVLPVLGAVPDGAIVLFSGMGPDAQQQVSVGVGALAGSTIMLLTIPW 105
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BLAST of mRNA_Ecto-sp9_F_contig9413.17567.1 vs.
Match: Uncharacterized (protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E2P4_BRELC)

HSP 1 Score: 161 bits (407), Expect = 9.450e-45
Identity = 83/103 (80.58%), Postives = 92/103 (89.32%), Query Frame = 1 
Query:    4 SLFIDPDTLPPDWQGFVQVCFLMLVYGYILFSASNMISDGSELLLLVPSVAGIVGSVVLPVLGAVPDGAIVLFSGMGDDAQEELSVGVGALAGSTIMLLTIPW 312
              FIDP  LP D QG +QV FL  VYG++LF+ASN+ISDGSELLLLVPS+AGIVGSVVLPVLGAVPDGAIVLFSGMG DAQ+++SVGVGALAGSTIMLLTIPW
Sbjct:    3 GFFIDPKDLPDDGQGLMQVLFLGAVYGFVLFNASNLISDGSELLLLVPSMAGIVGSVVLPVLGAVPDGAIVLFSGMGPDAQQQVSVGVGALAGSTIMLLTIPW 105
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BLAST of mRNA_Ecto-sp9_F_contig9413.17567.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WTV5_9STRA)

HSP 1 Score: 161 bits (408), Expect = 1.020e-44
Identity = 83/104 (79.81%), Postives = 92/104 (88.46%), Query Frame = 1 
Query:    1 MSLFIDPDTLPPDWQGFVQVCFLMLVYGYILFSASNMISDGSELLLLVPSVAGIVGSVVLPVLGAVPDGAIVLFSGMGDDAQEELSVGVGALAGSTIMLLTIPW 312
            M +FIDP  LP    G +QV FL  VYG++LF+ASN+ISDGSELLLLVPS+AGIVGSVVLPVLGAVPDGAIVLFSGMG DAQE++SVGVGALAGSTIMLLTIPW
Sbjct:   37 MGIFIDPSDLPEGGSGLIQVLFLGAVYGFVLFNASNLISDGSELLLLVPSMAGIVGSVVLPVLGAVPDGAIVLFSGMGPDAQEQVSVGVGALAGSTIMLLTIPW 140
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9413.17567.1 vs.
Match: Ca2:Cation (Antiporter (CaCA) Family n=5 Tax=Phytophthora TaxID=4783 RepID=A0A2P4Y199_9STRA)

HSP 1 Score: 160 bits (404), Expect = 2.530e-44
Identity = 83/103 (80.58%), Postives = 91/103 (88.35%), Query Frame = 1 
Query:    4 SLFIDPDTLPPDWQGFVQVCFLMLVYGYILFSASNMISDGSELLLLVPSVAGIVGSVVLPVLGAVPDGAIVLFSGMGDDAQEELSVGVGALAGSTIMLLTIPW 312
              FIDP  LP D  G VQV FL  VYG++LF+ASN+ISDGSELLLLVPS+AGIVGSVVLPVLGAVPDGAIVLFSGMG DAQ+++SVGVGALAGSTIMLLTIPW
Sbjct:    3 GFFIDPKDLPDDGYGLVQVLFLGAVYGFVLFNASNLISDGSELLLLVPSMAGIVGSVVLPVLGAVPDGAIVLFSGMGPDAQQQVSVGVGALAGSTIMLLTIPW 105
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BLAST of mRNA_Ecto-sp9_F_contig9413.17567.1 vs.
Match: Uncharacterized (protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XLP1_9STRA)

HSP 1 Score: 160 bits (404), Expect = 2.660e-44
Identity = 82/103 (79.61%), Postives = 92/103 (89.32%), Query Frame = 1 
Query:    4 SLFIDPDTLPPDWQGFVQVCFLMLVYGYILFSASNMISDGSELLLLVPSVAGIVGSVVLPVLGAVPDGAIVLFSGMGDDAQEELSVGVGALAGSTIMLLTIPW 312
             LFIDP  LP    GF+QV FL LVYGY+LF +S++ISDGSELLLLVP++AGIVGS+VLPVLGAVPDGAIVLFSGMG +AQE+LSVGVGALAGSTIMLLTIPW
Sbjct:    7 QLFIDPKELPDTGYGFIQVVFLGLVYGYVLFHSSSLISDGSELLLLVPTIAGIVGSIVLPVLGAVPDGAIVLFSGMGPNAQEQLSVGVGALAGSTIMLLTIPW 109
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9413.17567.1 vs.
Match: Uncharacterized (protein n=20 Tax=Peronosporaceae TaxID=4777 RepID=G4YQZ3_PHYSP)

HSP 1 Score: 159 bits (403), Expect = 3.530e-44
Identity = 82/103 (79.61%), Postives = 91/103 (88.35%), Query Frame = 1 
Query:    4 SLFIDPDTLPPDWQGFVQVCFLMLVYGYILFSASNMISDGSELLLLVPSVAGIVGSVVLPVLGAVPDGAIVLFSGMGDDAQEELSVGVGALAGSTIMLLTIPW 312
              FIDP  LP D  G +QV FL  VYG++LF+ASN+ISDGSELLLLVPS+AGIVGSVVLPVLGAVPDGAIVLFSGMG DAQ+++SVGVGALAGSTIMLLTIPW
Sbjct:    3 GFFIDPKDLPDDGYGLIQVLFLGAVYGFVLFNASNLISDGSELLLLVPSMAGIVGSVVLPVLGAVPDGAIVLFSGMGPDAQQQVSVGVGALAGSTIMLLTIPW 105
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9413.17567.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized5.810e-6499.03protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.370e-4678.64protein n=1 Tax=Phytophthora nicotianae TaxID=4790... [more]
Ca2:Cation9.840e-4680.58Antiporter family n=1 Tax=Thecamonas trahens ATCC ... [more]
Hypothetical3.010e-4580.58protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
Ca2:3.440e-4581.55cation antiporter family n=1 Tax=Plasmopara halste... [more]
Uncharacterized9.450e-4580.58protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A... [more]
Uncharacterized1.020e-4479.81protein (Fragment) n=1 Tax=Nothophytophthora sp. C... [more]
Ca2:Cation2.530e-4480.58Antiporter (CaCA) Family n=5 Tax=Phytophthora TaxI... [more]
Uncharacterized2.660e-4479.61protein n=2 Tax=Aphanomyces euteiches TaxID=100861... [more]
Uncharacterized3.530e-4479.61protein n=20 Tax=Peronosporaceae TaxID=4777 RepID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9413contigEcto-sp9_F_contig9413:1652..2218 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score199.1
Seed ortholog evalue1e-48
Seed eggNOG ortholog2880.D8LRU2
EggNOG OGs2D3RV@1,2SSII@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Exons2
Model size315
Cds size315
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931022.9266398-CDS-Ecto-sp9_F_contig9413:1651..17491622931022.9266398-CDS-Ecto-sp9_F_contig9413:1651..1749Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9413 1652..1749 +
1692278997.324524-CDS-Ecto-sp9_F_contig9413:1651..17491692278997.324524-CDS-Ecto-sp9_F_contig9413:1651..1749Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9413 1652..1749 +
1622931022.947874-CDS-Ecto-sp9_F_contig9413:2001..22181622931022.947874-CDS-Ecto-sp9_F_contig9413:2001..2218Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9413 2002..2218 +
1692278997.3447733-CDS-Ecto-sp9_F_contig9413:2001..22181692278997.3447733-CDS-Ecto-sp9_F_contig9413:2001..2218Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9413 2002..2218 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9413.17567.1prot_Ecto-sp9_F_contig9413.17567.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9413 1652..2218 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9413.17567.1

>prot_Ecto-sp9_F_contig9413.17567.1 ID=prot_Ecto-sp9_F_contig9413.17567.1|Name=mRNA_Ecto-sp9_F_contig9413.17567.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=105bp
MSLFIDPDTLPPDWQGFVQVCFLMLVYGYILFSASNMISDGSELLLLVPS
VAGIVGSVVLPVLGAVPDGAIVLFSGMGDDAQEELSVGVGALAGSTIMLL
TIPW*
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mRNA from alignment at Ecto-sp9_F_contig9413:1652..2218+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9413.17567.1 ID=mRNA_Ecto-sp9_F_contig9413.17567.1|Name=mRNA_Ecto-sp9_F_contig9413.17567.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=567bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9413:1652..2218+ (Ectocarpus species9 EcSCA_722f female)
ATGTCGTTATTCATCGACCCGGACACCTTGCCACCTGATTGGCAAGGTTT
TGTGCAAGTGTGTTTCCTGATGCTTGTATATGGGTACATCCTATTCAGGT
GTGTGTGCAGTCTTTGTACGTCGCATCATGAACTGTTAATCCGCGTTCAT
CTGCACATACATGCACACGACGAAGTAGTCTAGTTGGATGATTACAGCTG
TTCGGGTTGCAAACCGTGCCGCTCTTTAGAGATGTGTTGATGGCGTAGTT
CGGAGTAACTCAACAATTGTGTAACAGAACCCACGGGACTGATGTGTCTA
TGCTCCGCACTGTTTGCTGGTGTGTTTGCTGGGTTCACCCCCGTTTCTAG
CGCATCCAACATGATCTCGGATGGGTCGGAGCTCCTGCTGCTGGTTCCGT
CGGTGGCTGGCATCGTGGGTTCTGTCGTGCTTCCGGTGCTGGGCGCAGTC
CCTGACGGCGCTATCGTTCTGTTCTCGGGGATGGGTGATGACGCGCAGGA
AGAGCTTTCTGTCGGTGTCGGTGCTCTTGCAGGATCGACCATCATGCTGT
TAACCATACCTTGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9413:1652..2218+

>mRNA_Ecto-sp9_F_contig9413.17567.1 ID=mRNA_Ecto-sp9_F_contig9413.17567.1|Name=mRNA_Ecto-sp9_F_contig9413.17567.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=630bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9413:1652..2218+ (Ectocarpus species9 EcSCA_722f female)
ATGTCGTTATTCATCGACCCGGACACCTTGCCACCTGATTGGCAAGGTTT
TGTGCAAGTGTGTTTCCTGATGCTTGTATATGGGTACATCCTATTCAGAT
GTCGTTATTCATCGACCCGGACACCTTGCCACCTGATTGGCAAGGTTTTG
TGCAAGTGTGTTTCCTGATGCTTGTATATGGGTACATCCTATTCAGCGCA
TCCAACATGATCTCGGATGGGTCGGAGCTCCTGCTGCTGGTTCCGTCGGT
GGCTGGCATCGTGGGTTCTGTCGTGCTTCCGGTGCTGGGCGCAGTCCCTG
ACGGCGCTATCGTTCTGTTCTCGGGGATGGGTGATGACGCGCAGGAAGAG
CTTTCTGTCGGTGTCGGTGCTCTTGCAGGATCGACCATCATGCTGTTAAC
CATACCTTGGTGACGCATCCAACATGATCTCGGATGGGTCGGAGCTCCTG
CTGCTGGTTCCGTCGGTGGCTGGCATCGTGGGTTCTGTCGTGCTTCCGGT
GCTGGGCGCAGTCCCTGACGGCGCTATCGTTCTGTTCTCGGGGATGGGTG
ATGACGCGCAGGAAGAGCTTTCTGTCGGTGTCGGTGCTCTTGCAGGATCG
ACCATCATGCTGTTAACCATACCTTGGTGA
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