mRNA_Ecto-sp9_F_contig9411.17565.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9411.17565.1
Unique NamemRNA_Ecto-sp9_F_contig9411.17565.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9411.17565.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9411contigEcto-sp9_F_contig9411:2981..3165 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-18_003220.1
Exons1
Model size185
Cds size126
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931022.8022623-UTR-Ecto-sp9_F_contig9411:2980..30391622931022.8022623-UTR-Ecto-sp9_F_contig9411:2980..3039Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9411 2981..3039 -
1692278997.2807763-UTR-Ecto-sp9_F_contig9411:2980..30391692278997.2807763-UTR-Ecto-sp9_F_contig9411:2980..3039Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9411 2981..3039 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931022.8174891-CDS-Ecto-sp9_F_contig9411:3039..31651622931022.8174891-CDS-Ecto-sp9_F_contig9411:3039..3165Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9411 3040..3165 -
1692278997.291412-CDS-Ecto-sp9_F_contig9411:3039..31651692278997.291412-CDS-Ecto-sp9_F_contig9411:3039..3165Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9411 3040..3165 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9411.17565.1prot_Ecto-sp9_F_contig9411.17565.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9411 3040..3165 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9411.17565.1

>prot_Ecto-sp9_F_contig9411.17565.1 ID=prot_Ecto-sp9_F_contig9411.17565.1|Name=mRNA_Ecto-sp9_F_contig9411.17565.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=42bp
MSSFLSPLSSPGSLPHALPRGYMMEVPLTPRPPVERGSLGS*
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mRNA from alignment at Ecto-sp9_F_contig9411:2981..3165-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9411.17565.1 ID=mRNA_Ecto-sp9_F_contig9411.17565.1|Name=mRNA_Ecto-sp9_F_contig9411.17565.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=185bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9411:2981..3165- (Ectocarpus species9 EcSCA_722f female)
ATGTCATCGTTTCTGTCGCCGCTGTCTTCGCCTGGTTCGCTCCCACACGC
CCTGCCCCGCGGATACATGATGGAAGTGCCACTTACGCCCCGCCCCCCCG
TCGAACGAGGCTCCCTCGGAAGTTAAATAGTTGCTCGTCCAACGACCGGA
CGATGGGGCCGCCGGCAAGAGAGACAGGGCCGGGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9411:2981..3165-

>mRNA_Ecto-sp9_F_contig9411.17565.1 ID=mRNA_Ecto-sp9_F_contig9411.17565.1|Name=mRNA_Ecto-sp9_F_contig9411.17565.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=252bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9411:2981..3165- (Ectocarpus species9 EcSCA_722f female)
ATGTCATCGTTTCTGTCGCCGCTGTCTTCGCCTGGTTCGCTCCCACACGC
CCTGCCCCGCGGATACATGATGGAAGTGCCACTTACGCCCCGCCCCCCCG
TCGAACGAGGCTCCCTCGGAAGTTAAATGTCATCGTTTCTGTCGCCGCTG
TCTTCGCCTGGTTCGCTCCCACACGCCCTGCCCCGCGGATACATGATGGA
AGTGCCACTTACGCCCCGCCCCCCCGTCGAACGAGGCTCCCTCGGAAGTT
AA
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