mRNA_Ecto-sp9_F_contig940.17562.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp9_F_contig940.17562.1
Unique Name	mRNA_Ecto-sp9_F_contig940.17562.1
Type	mRNA
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)

Homology

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BLAST of mRNA_Ecto-sp9_F_contig940.17562.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMW6_ECTSI)

HSP 1 Score: 349 bits (895), Expect = 3.210e-115
Identity = 237/243 (97.53%), Postives = 238/243 (97.94%), Query Frame = 1

Query:  151 MQAPTRANSTAARCRWHRQPQSYHTHQPPLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--APGSPLTLRVRMPDGAVKRVKATGADTIDGILGKLGMDKGDGGSGEGLSTDASAGSSTADGATSVAALGLGNGDFLYVKSDSAARAAAKAKSDALGRMKAAVVGDKTGGSKFVPFPQHARPPPPRATKRVKTWQDIEAMQAQTFSLKPQKDSNVKKISVEQSAMDDFVG 873
            MQAPTRA STAARCRW RQPQSYHTHQ PLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  APGSPLTLRVRMPDGAVKRVKATGADTIDGILGKLGM+KGDGGSGEGLSTDASAGSSTADGATSVAALGLGNGDFLYVKSDSAARAAAKAKSDALGRMKAAVVGDKTGGSKFVPFPQHARPPPPRATKRVKTWQDIEAMQAQTFSLKPQKDSNVKKISVEQSAMDDFVG
Sbjct:    1 MQAPTRATSTAARCRWRRQPQSYHTHQAPLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPGSPLTLRVRMPDGAVKRVKATGADTIDGILGKLGMEKGDGGSGEGLSTDASAGSSTADGATSVAALGLGNGDFLYVKSDSAARAAAKAKSDALGRMKAAVVGDKTGGSKFVPFPQHARPPPPRATKRVKTWQDIEAMQAQTFSLKPQKDSNVKKISVEQSAMDDFVG 243

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig940.17562.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig940.17562.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
Uncharacterized	3.210e-115	97.53	protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMW6...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig940	contig	Ecto-sp9_F_contig940:26291..28208 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Ec32 ortholog description	Nuclear pore localisation protein NPL4
Ec32 ortholog	Ec-02_003900.1
Exons	4
Model size	876
Cds size	726
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig940.17562.1	prot_Ecto-sp9_F_contig940.17562.1	Ectocarpus species9 EcSCA_722f female	polypeptide	Ecto-sp9_F_contig940 26688..28208 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931022.3582854-UTR-Ecto-sp9_F_contig940:26290..26410	1622931022.3582854-UTR-Ecto-sp9_F_contig940:26290..26410	Ectocarpus species9 EcSCA_722f female	UTR	Ecto-sp9_F_contig940 26291..26410 +
1692278997.0218735-UTR-Ecto-sp9_F_contig940:26290..26410	1692278997.0218735-UTR-Ecto-sp9_F_contig940:26290..26410	Ectocarpus species9 EcSCA_722f female	UTR	Ecto-sp9_F_contig940 26291..26410 +
1622931022.376234-UTR-Ecto-sp9_F_contig940:26657..26687	1622931022.376234-UTR-Ecto-sp9_F_contig940:26657..26687	Ectocarpus species9 EcSCA_722f female	UTR	Ecto-sp9_F_contig940 26658..26687 +
1692278997.0434961-UTR-Ecto-sp9_F_contig940:26657..26687	1692278997.0434961-UTR-Ecto-sp9_F_contig940:26657..26687	Ectocarpus species9 EcSCA_722f female	UTR	Ecto-sp9_F_contig940 26658..26687 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931022.3941839-CDS-Ecto-sp9_F_contig940:26687..27140	1622931022.3941839-CDS-Ecto-sp9_F_contig940:26687..27140	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig940 26688..27140 +
1692278997.0599303-CDS-Ecto-sp9_F_contig940:26687..27140	1692278997.0599303-CDS-Ecto-sp9_F_contig940:26687..27140	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig940 26688..27140 +
1622931022.4099898-CDS-Ecto-sp9_F_contig940:27590..27712	1622931022.4099898-CDS-Ecto-sp9_F_contig940:27590..27712	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig940 27591..27712 +
1692278997.0743194-CDS-Ecto-sp9_F_contig940:27590..27712	1692278997.0743194-CDS-Ecto-sp9_F_contig940:27590..27712	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig940 27591..27712 +
1622931022.426213-CDS-Ecto-sp9_F_contig940:28057..28208	1622931022.426213-CDS-Ecto-sp9_F_contig940:28057..28208	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig940 28058..28208 +
1692278997.0876133-CDS-Ecto-sp9_F_contig940:28057..28208	1692278997.0876133-CDS-Ecto-sp9_F_contig940:28057..28208	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig940 28058..28208 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp9_F_contig940:26291..28208+
coding sequence from alignment at Ecto-sp9_F_contig940:26291..28208+

protein sequence of mRNA_Ecto-sp9_F_contig940.17562.1

>prot_Ecto-sp9_F_contig940.17562.1 ID=prot_Ecto-sp9_F_contig940.17562.1|Name=mRNA_Ecto-sp9_F_contig940.17562.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=242bp
MQAPTRANSTAARCRWHRQPQSYHTHQPPLNNNNIRRKKPPRRRSSSSAF
STSLSLLLLAVCCWCGRAAAAAAPGSPLTLRVRMPDGAVKRVKATGADTI
DGILGKLGMDKGDGGSGEGLSTDASAGSSTADGATSVAALGLGNGDFLYV
KSDSAARAAAKAKSDALGRMKAAVVGDKTGGSKFVPFPQHARPPPPRATK
RVKTWQDIEAMQAQTFSLKPQKDSNVKKISVEQSAMDDFVG*

mRNA from alignment at Ecto-sp9_F_contig940:26291..28208+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp9_F_contig940.17562.1 ID=mRNA_Ecto-sp9_F_contig940.17562.1|Name=mRNA_Ecto-sp9_F_contig940.17562.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1918bp|location=Sequence derived from alignment at Ecto-sp9_F_contig940:26291..28208+ (Ectocarpus species9 EcSCA_722f female)
CCTGGACTCGCGCAGTGCGAGCACCTCACCAGCCTGGCTCAGCTCACCTC
TCATCATTGTTGGCTCTCCTTGTCTCGTTGAGAATTCAGGCCGTTTGCCT
TGGTCTATCAGTTTTCCACGGTAAGTGCAACCACGGGTAGTGCAACAGAG
CTGTTCATGTAGCGGTACTCCTGGAAATACCCCCAGGCAACAGCAGTATC
CATGTGATGTGCGCTTGCCAAGTGTCATGATCCTACACGCGCTAGCCGGC
ATGCTACCACTGCCCGATGACGCCAACACCACATGTACATTGATCTCTCT
TGTGCAATCACTCCGTTCAATACCGCTTCTCCTGTACACGCTGTCAACCA
TCTTGCTCCCTGGGCAGAGCGTTTTGTTCAAGACCCATCCAGCAGACATG
CAGGCCCCGACAAGGGCAAATTCAACAGCAGCCCGCTGCCGATGGCACCG
ACAGCCGCAGAGCTACCACACGCACCAACCACCGCTAAACAACAACAACA
TCAGGAGAAAGAAACCCCCACGCCGGCGTAGCAGTAGTTCCGCGTTCTCC
ACCTCCCTGTCCCTGCTACTTTTAGCCGTCTGCTGCTGGTGCGGGCGAGC
AGCGGCGGCGGCAGCTCCAGGAAGCCCGCTAACACTGCGCGTTCGCATGC
CGGACGGCGCCGTCAAGCGCGTGAAAGCGACGGGCGCGGACACGATCGAC
GGCATACTGGGCAAGCTGGGGATGGACAAGGGCGACGGGGGCAGCGGGGA
GGGGTTGAGCACGGACGCCTCTGCAGGGAGTTCCACAGCGGACGGTGCGA
CGTCGGTGGCGGCCCTGGGTCTAGGGAACGGGGACTTCTTGTACGTCAAG
GTTAGTGTGCATATCATAGGTGGCCTTTGATGTTTGGAACACAAATACGT
GGGGGTGCATATCCACCGGGTGACGAGCTAGTCGTGCTCGTCGTATGGCC
ACTCCGCTCCGTGTGATGCTGACTCGATTTGTCTCGTGCACAAGTCTCTC
TTGTGATGTAGCCAAAGCCAAGGGTGTCGATACATTGGCGGCGCACGCCG
GGCGTGATGTTCTACGACACGTTGCGACGTAGCCGTACCAATGTAGCTAC
ATCACGGGCCTTGCTGTTTGTGAACGGCTTATCAAGATTTCAAGGGCAAC
AAGAACAACGGAGACATTCTTTTTCGCTGGTTTGGTGTGCAATCGTTCCT
TCGCCCTGTGAGGGCAACTTCCCTGTGCCCCAAGCGTAAAAGCAACAGCC
CCCGCTCCGCTGGCGAACATTTCGTCGCCTTTTTCTTCCTTCCGCCACAG
AGCGATTCGGCCGCGCGGGCCGCGGCGAAGGCGAAGTCGGATGCCTTGGG
GAGGATGAAGGCGGCGGTCGTCGGAGACAAGACCGGCGGGAGCAAGTTCG
TGCCTTTTCCCCAGCACGCCAGGTATGGCTTTTGGAGGTGTGCCTGGTGG
TGGGTGCGCTTGAGCTTTGGTGTTGTTGCTGCTCTGCTATTTCCGACCGT
GCTCGGAAAGGGATGCTTGTTTCCGGTCACGGCAAAGCTACAGTAGGCCC
TTCTGTCCATGGCGATGTTGTAGCTTCTATCCGTAGCGATTTTGTAGGCT
GAAATTGTCGTGTCGTAAAACCGGTGCTTGCTCCGTGAATGAGTGAACAC
TCGGTGGACGTGTGTGAAGACCCTGTTCGGCAGCTTCTTAAGTGGTTGAG
CAGGCTTATGGTGCTTGCTGAAAACACACCCCATTACTTGTGAAACGGGG
TGGGTCTAAAACGGCAGGCCGCCGCCGCCACGAGCGACGAAGCGCGTCAA
GACCTGGCAGGACATCGAGGCCATGCAGGCGCAGACCTTCTCCCTCAAGC
CTCAGAAGGACTCGAACGTCAAGAAGATCAGCGTGGAGCAGTCCGCCATG
GACGACTTCGTTGGGTGA

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig940:26291..28208+

>mRNA_Ecto-sp9_F_contig940.17562.1 ID=mRNA_Ecto-sp9_F_contig940.17562.1|Name=mRNA_Ecto-sp9_F_contig940.17562.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1452bp|location=Sequence derived from alignment at Ecto-sp9_F_contig940:26291..28208+ (Ectocarpus species9 EcSCA_722f female)
ATGCAGGCCCCGACAAGGGCAAATTCAACAGCAGCCCGCTGCCGATGGCA
CCGACAGCCGCAGAGCTACCACACGCACCAACCACCGCTAAACAACAACA
ACATCAGGAGAAAGAAACCCCCACGCCGGCGTAGCAGTAGTTCCGCGTTC
TCCACCTCCCTGTCCCTGCTACTTTTAGCCGTCTGCTGCTGGTGCGGGCG
AGCAGCGGCGGCGGCAGCTCCAGGAAGCCCGCTAACACTGCGCGTTCGCA
TGCCGGACGGCGCCGTCAAGCGCGTGAAAGCGACGGGCGCGGACACGATC
GACGGCATACTGGGCAAGCTGGGGATGGACAAGGGCGACGGGGGCAGCGG
GGAGGGGTTGAGCACGGACGCCTCTGCAGGGAGTTCCACAGCGGACGGTG
CGACGTCGGTGGCGGCCCTGGGTCTAGGGAACGGGGACTTCTTGTACGTC
AAGATGCAGGCCCCGACAAGGGCAAATTCAACAGCAGCCCGCTGCCGATG
GCACCGACAGCCGCAGAGCTACCACACGCACCAACCACCGCTAAACAACA
ACAACATCAGGAGAAAGAAACCCCCACGCCGGCGTAGCAGTAGTTCCGCG
TTCTCCACCTCCCTGTCCCTGCTACTTTTAGCCGTCTGCTGCTGGTGCGG
GCGAGCAGCGGCGGCGGCAGCTCCAGGAAGCCCGCTAACACTGCGCGTTC
GCATGCCGGACGGCGCCGTCAAGCGCGTGAAAGCGACGGGCGCGGACACG
ATCGACGGCATACTGGGCAAGCTGGGGATGGACAAGGGCGACGGGGGCAG
CGGGGAGGGGTTGAGCACGGACGCCTCTGCAGGGAGTTCCACAGCGGACG
GTGCGACGTCGGTGGCGGCCCTGGGTCTAGGGAACGGGGACTTCTTGTAC
GTCAAGAGCGATTCGGCCGCGCGGGCCGCGGCGAAGGCGAAGTCGGATGC
CTTGGGGAGGATGAAGGCGGCGGTCGTCGGAGACAAGACCGGCGGGAGCA
AGTTCGTGCCTTTTCCCCAGCACGCCAGAGCGATTCGGCCGCGCGGGCCG
CGGCGAAGGCGAAGTCGGATGCCTTGGGGAGGATGAAGGCGGCGGTCGTC
GGAGACAAGACCGGCGGGAGCAAGTTCGTGCCTTTTCCCCAGCACGCCAG
GCCGCCGCCGCCACGAGCGACGAAGCGCGTCAAGACCTGGCAGGACATCG
AGGCCATGCAGGCGCAGACCTTCTCCCTCAAGCCTCAGAAGGACTCGAAC
GTCAAGAAGATCAGCGTGGAGCAGTCCGCCATGGACGACTTCGTTGGGTG
AGCCGCCGCCGCCACGAGCGACGAAGCGCGTCAAGACCTGGCAGGACATC
GAGGCCATGCAGGCGCAGACCTTCTCCCTCAAGCCTCAGAAGGACTCGAA
CGTCAAGAAGATCAGCGTGGAGCAGTCCGCCATGGACGACTTCGTTGGGT
GA