mRNA_Ecto-sp9_F_contig940.17561.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig940.17561.1
Unique NamemRNA_Ecto-sp9_F_contig940.17561.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig940.17561.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMW5_ECTSI)

HSP 1 Score: 211 bits (538), Expect = 1.070e-61
Identity = 142/153 (92.81%), Postives = 142/153 (92.81%), Query Frame = 2 
Query:   92 MLSRRPTGLRGRSSCRTGRPLLALFLAALLVVLSPASAFLSSSPPRPSSSASSPSRSAKRAERLAPLHGIKRKVKVEMEENFSGKVVEPAGAATSMFGSDANALFDVIEKNKKKAAEXXXXXXXXXXXXXXXXXX-EEGADGGDAGVGDGEKA 547
            MLSRRPTGLRGRSSCRTGRPLLALFLAALLVVLSPASAFLSSSPPR         RSAKRAERLAPLHGIKRKVKVEMEENFSGKVVEPAGAATSMFGSDANALFDVIEKNKKKAAEXXXXXXXXXXXXXXXXXX EEGADGGDAGVGDGE A
Sbjct:    1 MLSRRPTGLRGRSSCRTGRPLLALFLAALLVVLSPASAFLSSSPPRXXXXXXXXXRSAKRAERLAPLHGIKRKVKVEMEENFSGKVVEPAGAATSMFGSDANALFDVIEKNKKKAAEXXXXXXXXXXXXXXXXXXXEEGADGGDAGVGDGETA 153
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig940.17561.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.070e-6192.81protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMW5... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig940contigEcto-sp9_F_contig940:23050..26145 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_003890.1
Exons3
Model size1978
Cds size459
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig940.17561.1prot_Ecto-sp9_F_contig940.17561.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig940 24478..25493 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931022.2454538-UTR-Ecto-sp9_F_contig940:23049..244771622931022.2454538-UTR-Ecto-sp9_F_contig940:23049..24477Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig940 23050..24477 -
1692278996.97232-UTR-Ecto-sp9_F_contig940:23049..244771692278996.97232-UTR-Ecto-sp9_F_contig940:23049..24477Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig940 23050..24477 -
1622931022.295353-UTR-Ecto-sp9_F_contig940:25493..255301622931022.295353-UTR-Ecto-sp9_F_contig940:25493..25530Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig940 25494..25530 -
1692278997.0014272-UTR-Ecto-sp9_F_contig940:25493..255301692278997.0014272-UTR-Ecto-sp9_F_contig940:25493..25530Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig940 25494..25530 -
1622931022.3118136-UTR-Ecto-sp9_F_contig940:26091..261451622931022.3118136-UTR-Ecto-sp9_F_contig940:26091..26145Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig940 26092..26145 -
1692278997.0115771-UTR-Ecto-sp9_F_contig940:26091..261451692278997.0115771-UTR-Ecto-sp9_F_contig940:26091..26145Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig940 26092..26145 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931022.260641-CDS-Ecto-sp9_F_contig940:24477..246931622931022.260641-CDS-Ecto-sp9_F_contig940:24477..24693Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig940 24478..24693 -
1692278996.9825335-CDS-Ecto-sp9_F_contig940:24477..246931692278996.9825335-CDS-Ecto-sp9_F_contig940:24477..24693Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig940 24478..24693 -
1622931022.2787936-CDS-Ecto-sp9_F_contig940:25250..254931622931022.2787936-CDS-Ecto-sp9_F_contig940:25250..25493Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig940 25251..25493 -
1692278996.9920552-CDS-Ecto-sp9_F_contig940:25250..254931692278996.9920552-CDS-Ecto-sp9_F_contig940:25250..25493Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig940 25251..25493 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig940.17561.1

>prot_Ecto-sp9_F_contig940.17561.1 ID=prot_Ecto-sp9_F_contig940.17561.1|Name=mRNA_Ecto-sp9_F_contig940.17561.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=153bp
MLSRRPTGLRGRSSCRTGRPLLALFLAALLVVLSPASAFLSSSPPRPSSS
ASSPSRSAKRAERLAPLHGIKRKVKVEMEENFSGKVVEPAGAATSMFGSD
ANALFDVIEKNKKKAAEAAAAAAAAADGNGDDDGDEEGADGGDAGVGDGE
KA*
back to top

mRNA from alignment at Ecto-sp9_F_contig940:23050..26145-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig940.17561.1 ID=mRNA_Ecto-sp9_F_contig940.17561.1|Name=mRNA_Ecto-sp9_F_contig940.17561.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3096bp|location=Sequence derived from alignment at Ecto-sp9_F_contig940:23050..26145- (Ectocarpus species9 EcSCA_722f female)
CAGAGAGCACAGCAGGAGCCTGGTGTGCTCAGCGGTGTGTGGAGAACAAA
GCAGGTGAGAGTAGGCGTTGTGAAGAAGCGTCTTGGTAGCGATTTAAAGC
AGCGATGTACTTGTATATGTACACAGCAGGTGCGCATGTACCCACGGGTA
CCTGGTACACATCAGGTCTGATGCTATCGTATTCAGTACAGCAGTAGTCT
TATACGGCATGTACAATACAGGGTCCAACCCCTCTACCCTGCGTCTTCTG
GTCTGTGCCTTCTGCGCCGCCGACTGCGCTGCTGCTATCACCATTTATTT
CCAAAACGCCCTCTGTGCTGAACGCAAAAACTGCGCCTTATCCAAGACGG
GTAAGTATTGATGTCACGGGAAGGGGGTGTAAAAGAAACATAAATGTTTA
GGTTGATGTCGTGATGCATTCCAACCGTAGTCGAAGTTTGGTACTTTTGT
AGGCAGCAATTGTCGTCGTATATAGAAGAGTTGGCCCGCGATGCCTTGTA
GTCGGTACTTTCTTGCCCCACGATAAACAGAAATACTCCTGCTGTAAACT
TGCAACGTGAAGCAAACCCTATACAACCTCCTTTTTCTCTGTCTTGCGTA
TGCACACGACAACAGGCGAACCGAACACTGCTCTTTTCACACGCTGGGAA
ACATGTTGTCGAGACGGCCCACCGGCCTTCGCGGCAGAAGCAGCTGCCGC
ACGGGACGGCCACTGTTGGCGTTGTTCTTGGCGGCCCTTCTCGTTGTTCT
GTCGCCGGCGTCCGCCTTCCTCTCATCATCACCACCACGACCATCCTCCT
CCGCCTCCTCCCCCTCGCGATCGGCGAAGCGCGCGGAGAGATTGGCGCCG
CTCCACGGCATCAAGAGGAAGGTCAAGGTCGAGATGGAGGAAAACGTGAG
GAACGACCGCCGGTCAATCAAAAATGCTTTTTTTAGTTGCGTGGCCCGGC
AAGGAGGCTGGTTGTGCTGCCCTCACGCTTTGTTGGTTGACCTATCTACT
TTGACCCCGTGCTGTCAACTTGATATGGGACGGCGTATATGGTAGCTTGC
TGCTGCAGCGTTTCGCGGAAACTCTTAACAGGATGTCCACCGTCGCCTGT
CGAGCGACTTCACGTTACTAGCAAGCTCCTCTAGCCGTCTCTCATAACCC
AACGTGTAAGCCGCTGCGCCGGGGGAGTGGTTGTTTGAGGGTCGTTCAGA
CCGAAGAAGGTCGGGGTGCAGAGACATGTTAGTTGCCCTGGTTGTCGTCC
TGATGTAGTTTCTTCCTCGTCATCTTCCACGTCATGAGGCGCGTTTCCGC
CCAAAGAAATGCGACAACAAATAAATCATGTTTCAAGACGCGTCATTAGG
GCCAGTTGGTTTCCATCTCTACAGCAGTGTAGCGTTTCGACCTTGGTCTA
TCGAACCCTCGGGTGTCCGCTACGACTCCTTCTGTTGTGTTCCCGCGGCC
AGTTCTCCGGGAAAGTGGTGGAGCCGGCAGGGGCGGCGACGAGCATGTTC
GGGAGCGACGCCAATGCGCTCTTCGACGTGATCGAGAAGAACAAGAAGAA
GGCCGCGGAGGCCGCCGCCGCCGCCGCCGCCGCCGCAGATGGCAACGGGG
ATGACGATGGCGATGAAGAAGGGGCAGACGGTGGAGATGCCGGTGTCGGG
GACGGAGAGAAGGCATGATAAGAGTCGTGCATCAATGTTTGAACATGAGA
ATCTTACGGAGGCAGCAGCTGCGGTCATGTATGTATTGAGATAGAACTGC
CTTGCTTTTGATCGTTGGGTGTGTAGAACTGCTGCTTATGGGGCGTATAG
ATTGTGTAGTCCGAGCCTGCCCCATGATTTGTAGGTTTTCCCTGTGTTGA
AGCAAGAAAACGTGTTGTTTGCCTTGCCCCCTTTGAAGTCTAGTGTTGTG
GCTTGCTTCCCTACGGTGTGTACTGCTCTCAAGTGGCCTCTTTCGTTTCA
TTCATTCGTGTGGGTGTTGGTTGAGGATGGTTTTCTTGTGGACGGGGCTC
GAAACGTGTCGTGTCTGGATGGCCTGCTTCTTCCACACGCGACCCAAAGT
TGAAGGTTAACAATCATAATTTCCGATCAGCGGTGTATCCACCAGGATTT
CCGGAATGCACTATCTGCGTTTCCCCGGCTCATACGTCCAGAAAATGCAC
AACACGTGTATAACGGACGTCGTTCGACAAAACCCACGCTTCCCTTACCT
GGGCTAGTCGGCACGATGTTACCTTGATGGACCCTCTCCTCTTACCTCTA
CACCTCTACACGTCGGTGTTCGGGTGGACATTATTGAATGGAGGTATCCG
TCCCCGAGCTAGGGGTACGATTTGTCCTTGCTTGGCCATGCGTTGTGTGA
GGCGCGATACTCTGCTGTCGCGGCAGCGTTGTTTGGCAGTGATCGCCGTT
ACCTGTGTACCGGTAATTACCGGTAACAACGTTGGGGGTGCGGTAACCAA
AAAAATCGAGGTAATTGTGGTGCCCCCTAAGAGCTACATCCACGGGGCCC
CCTCTTGCGTGCCACAAACCACAGCAAACAGCCTTGAGCGGGGATAACTC
TGACTCTGACGGCAGTGGGGACTCAGACTCGGGCGAAGGCTCGGATTTTT
CCGTCTAGTTTGCGGAATTCAGAATTCAGAGATTTTGGCTGCCATTTTCC
GTAAAACGTGTTCATGTGAACAGAATATTCCTAGCGTTGAAGAGGCCCGC
GCACGTTTTTTTTTTGTTGGTGGTGAAAATGAATGTATATGTGTCGGCTG
CGCTGGGAGACTTCGGAAAGTGGGAAAAGCGTGGATGGTGCTTCTTTGGG
TACGTAAGATAGACAAGTAAGTCTGTCTGTCGGCGAGAATTAATTGTGGG
TGGGTGTGAAGGATGTTAGGAAGCCAAAAGTAATCGTCTTGACTTTTTAC
ATGTTTATCTTGTTCACTTGATCATCATGCGTTTTCTCCAGAGAGAGAAG
CAGAGAGGAAATAAAATATGCTGCTGCTGTATGTACGTAATGTATATCGC
CAACTGCAAATATATGTATATCGCAACAACAACACAACCAAGGAGCAATT
TTTTTCATTTTTTCCAGATGATATGATGGTACGAGCACTGCGGGAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig940:23050..26145-

>mRNA_Ecto-sp9_F_contig940.17561.1 ID=mRNA_Ecto-sp9_F_contig940.17561.1|Name=mRNA_Ecto-sp9_F_contig940.17561.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=918bp|location=Sequence derived from alignment at Ecto-sp9_F_contig940:23050..26145- (Ectocarpus species9 EcSCA_722f female)
ATGTTGTCGAGACGGCCCACCGGCCTTCGCGGCAGAAGCAGCTGCCGCAC
GGGACGGCCACTGTTGGCGTTGTTCTTGGCGGCCCTTCTCGTTGTTCTGT
CGCCGGCGTCCGCCTTCCTCTCATCATCACCACCACGACCATCCTCCTCC
GCCTCCTCCCCCTCGCGATCGGCGAAGCGCGCGGAGAGATTGGCGCCGCT
CCACGGCATCAAGAGGAAGGTCAAGGTCGAGATGGAGGAAAACATGTTGT
CGAGACGGCCCACCGGCCTTCGCGGCAGAAGCAGCTGCCGCACGGGACGG
CCACTGTTGGCGTTGTTCTTGGCGGCCCTTCTCGTTGTTCTGTCGCCGGC
GTCCGCCTTCCTCTCATCATCACCACCACGACCATCCTCCTCCGCCTCCT
CCCCCTCGCGATCGGCGAAGCGCGCGGAGAGATTGGCGCCGCTCCACGGC
ATCAAGAGGAAGGTCAAGGTCGAGATGGAGGAAAACTTCTCCGGGAAAGT
GGTGGAGCCGGCAGGGGCGGCGACGAGCATGTTCGGGAGCGACGCCAATG
CGCTCTTCGACGTGATCGAGAAGAACAAGAAGAAGGCCGCGGAGGCCGCC
GCCGCCGCCGCCGCCGCCGCAGATGGCAACGGGGATGACGATGGCGATGA
AGAAGGGGCAGACGGTGGAGATGCCGGTGTCGGGGACGGAGAGAAGGCAT
GATTCTCCGGGAAAGTGGTGGAGCCGGCAGGGGCGGCGACGAGCATGTTC
GGGAGCGACGCCAATGCGCTCTTCGACGTGATCGAGAAGAACAAGAAGAA
GGCCGCGGAGGCCGCCGCCGCCGCCGCCGCCGCCGCAGATGGCAACGGGG
ATGACGATGGCGATGAAGAAGGGGCAGACGGTGGAGATGCCGGTGTCGGG
GACGGAGAGAAGGCATGA
back to top