mRNA_Ecto-sp9_F_contig939.17546.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig939.17546.1
Unique NamemRNA_Ecto-sp9_F_contig939.17546.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig939.17546.1 vs.
Match: Mediator (of RNA polymerase II transcription subunit 6 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKW4_9PHAE)

HSP 1 Score: 504 bits (1297), Expect = 2.850e-177
Identity = 277/289 (95.85%), Postives = 280/289 (96.89%), Query Frame = 3 
Query:   63 MDFPGAAEDPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQGVDPREGLLNLTGLEFMLVELPPEMSFLPPGHPAPAGPQPRRLFVIKKQVRKSPSSVEVQAIYYMMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVGVAEEDRDAKAALKLSMDNILMGLVEKYIDGDGEGKEGKEPAARGAKRKADGEAATSASLDAXXXXXXXXXXXXXXXXXXXXXXXXTPTTGGMTKTLAATKPTR 929
            M+FPGAAEDPEQRSFIDPVWLQQWGLGP+NALDYFALSPFYDKACNNEQCRMQ VDPREGLLNLTGLEFMLVELPPEMSFLPPG PAPAGPQPRRLFVIKKQVRKSPSSVEVQAIYY+MEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVGVAEEDRDAKAALKLSMDNILMGLVEKYIDGDGEGKEGKEPAARGAKRKADGEA TSASLDA XXXXXXXXXXXXXXXXXX     TPTTGGMTKTLAATKPTR
Sbjct:    1 MEFPGAAEDPEQRSFIDPVWLQQWGLGPQNALDYFALSPFYDKACNNEQCRMQSVDPREGLLNLTGLEFMLVELPPEMSFLPPGQPAPAGPQPRRLFVIKKQVRKSPSSVEVQAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVGVAEEDRDAKAALKLSMDNILMGLVEKYIDGDGEGKEGKEPAARGAKRKADGEAVTSASLDAAXXXXXXXXXXXXXXXXXX-----TPTTGGMTKTLAATKPTR 284
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BLAST of mRNA_Ecto-sp9_F_contig939.17546.1 vs.
Match: Mediator (of RNA polymerase II transcription subunit 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6X0_ECTSI)

HSP 1 Score: 306 bits (785), Expect = 2.090e-101
Identity = 147/150 (98.00%), Postives = 148/150 (98.67%), Query Frame = 3 
Query:   63 MDFPGAAEDPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQGVDPREGLLNLTGLEFMLVELPPEMSFLPPGHPAPAGPQPRRLFVIKKQVRKSPSSVEVQAIYYMMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVE 512
            MDFPGAAEDPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQGVDPREGLLNLTGLEFMLVELPPEMSFLPPG PAPAGPQPRRLFVIKKQVRKSPSSVEVQAIYY+MEGVIYQAPTVQKLIKSRLNKFTHHLNNAF E
Sbjct:    1 MDFPGAAEDPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQGVDPREGLLNLTGLEFMLVELPPEMSFLPPGQPAPAGPQPRRLFVIKKQVRKSPSSVEVQAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFGE 150
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BLAST of mRNA_Ecto-sp9_F_contig939.17546.1 vs.
Match: Mediator (of RNA polymerase II transcription subunit 6 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVL9_9STRA)

HSP 1 Score: 167 bits (422), Expect = 1.590e-45
Identity = 97/216 (44.91%), Postives = 127/216 (58.80%), Query Frame = 3 
Query:   84 EDPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQGV-DPREGLLNLTGLEFMLVELPPEMSFLP-PGHPAPAGPQPRRLFVIKKQVRKSPSSVEVQAIYYMMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVGVAE-EDRDAKAALKLSMDNILMGLVEKYIDGDGEG 722
            ED  Q SF D +WL+ + LGPE A+DYFALSPFYD+  NNE CRMQG+ D    +  +TG+E+++ ELPPE   LP PG P    PQPR L VIKKQ RKS +  EV+ +YY+M+G IYQAP+   LI SRL K    L+ +F  L  L    ++ G YDW W  EA                  + + A +A++   D IL+ LV +Y   +GEG
Sbjct:   16 EDQTQLSFQDTMWLRSFYLGPETAIDYFALSPFYDRTSNNELCRMQGLTDHVAAMQTMTGIEYVVEELPPETDELPEPGAP----PQPRHLMVIKKQYRKSKTQAEVRGVYYIMDGTIYQAPSALALITSRLQKAAFMLSESFAALRALPA-HNARGAYDWPWNAEAXXXXXXXXXXXXXXXXXXQSQAALSAVRAGADAILLQLVSRYARSEGEG 226
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BLAST of mRNA_Ecto-sp9_F_contig939.17546.1 vs.
Match: Mediator (of RNA polymerase II transcription subunit 6 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GW25_9STRA)

HSP 1 Score: 122 bits (306), Expect = 1.730e-28
Identity = 72/161 (44.72%), Postives = 99/161 (61.49%), Query Frame = 3 
Query:  102 SFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQGVDPREGLLNLTGLEFMLVELPP--EMSFLPPGHPAPAGPQPRRLFVIKKQVRKSPSSVEVQAIYYMMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEA 578
            SF+D  W++ +GL   N LDYFA SPFYD +CNNE  RMQ +          GLE ML ++PP  E   LP GH  P       LF++ KQ R S + V  QA+YY+++ VIYQAP++Q+LI +RL+K T+HL NAF ++ K A+   S G + W +  +A
Sbjct:   65 SFLDDNWIRAFGLSAHNVLDYFACSPFYDTSCNNEILRMQNL----------GLE-MLADMPPGIEYRLLPSGH-EPV------LFIVVKQERASKTVVRRQALYYILDKVIYQAPSLQRLIATRLSKSTNHLQNAFDQMVKAARYAPSQG-FTWHFDGDA 206
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BLAST of mRNA_Ecto-sp9_F_contig939.17546.1 vs.
Match: Mediator (of RNA polymerase II transcription subunit 6 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C4K5_HYAAE)

HSP 1 Score: 121 bits (303), Expect = 2.930e-28
Identity = 76/214 (35.51%), Postives = 120/214 (56.07%), Query Frame = 3 
Query:   78 AAEDPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQ--GVDPREGLLNLTGLEFMLVELPPEMSFLPPGHPAPAGPQPRRLFVIKKQVRKSPSSVEVQAIYYMMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVGVAEEDRDAKAALKLS----MDNILMGLVEKY 701
            A  D    SF D VWLQ + L P+  L YFALSPFYD++CNNE+ +MQ  G+D    L NL G+E+ L+             P  A   P++L+VI+KQ R S + VE  A+YY+++G +YQAP +  ++ SRL K ++ +N AF  L+   +   + G   +AW   +KD +E    +E + +  + +  K   +      +D+IL+ L++K+
Sbjct:    5 AHADDYNASFRDTVWLQSFPLNPQTVLHYFALSPFYDRSCNNERLKMQRLGLDQ---LKNLRGIEYELL-------------PNAAKQLPQQLYVIRKQRRSSRTQVEPLAVYYVLDGTVYQAPNIHAMLTSRLKKCSYRINKAFHGLAAGVRFSPTEG---YAWDFSSKDKKEPVIPSEQLQLKLKQKYEKMEKQRENSARVDSILIQLMKKH 199
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BLAST of mRNA_Ecto-sp9_F_contig939.17546.1 vs.
Match: Mediator (of RNA polymerase II transcription subunit 6 n=15 Tax=Peronosporaceae TaxID=4777 RepID=D0NQQ4_PHYIT)

HSP 1 Score: 117 bits (293), Expect = 5.610e-27
Identity = 74/211 (35.07%), Postives = 117/211 (55.45%), Query Frame = 3 
Query:   87 DPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQ--GVDPREGLLNLTGLEFMLVELPPEMSFLPPGHPAPAGPQPRRLFVIKKQVRKSPSSVEVQAIYYMMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVGVAEEDRDAKAALKLS----MDNILMGLVEKY 701
            D    SF D VWLQ + L  +  L YFALSPFYD++CNNE+ +MQ  G+D    L NL G+E+ L+             P  A   P++LF+I+KQ R   + VE  AIYY+++G +YQAP +  ++ SRL K ++ +N AF  L+   +   + G   +AW   +KD +E    +E + +  + +  K   +      +D+IL+ L++K+
Sbjct:    8 DDYNASFRDTVWLQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQRLGLDQ---LKNLRGVEYELL-------------PNTAKQMPQQLFIIRKQRRSGRTQVEPLAIYYVLDGTVYQAPNIHAMLTSRLKKCSYRVNKAFHGLAAGVRFSPTEG---YAWDFSSKDKKEPVIPSEQLQLKLKQKYEKMEKQRENSARVDSILIQLMKKH 199
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BLAST of mRNA_Ecto-sp9_F_contig939.17546.1 vs.
Match: Mediator (of RNA polymerase II transcription subunit 6 (Fragment) n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9RVG1_PHYPA)

HSP 1 Score: 112 bits (281), Expect = 6.680e-26
Identity = 74/201 (36.82%), Postives = 104/201 (51.74%), Query Frame = 3 
Query:  102 SFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQGVDPRE--GLLNLTGLEFMLVELPPEMSFLPPGHPAPAGPQPRRLFVIKKQVRKSPSSVEVQAIYYMMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVGVAEEDRDAKAALKLSMDNILMGLVEK 698
            SF D +WL  + L      DYFALSPFYD+ CNNEQ RM+ + P +   L   TG+E++L E                  Q   LFVI+KQ R  P  V  QA YY+++G IYQAP +  +I SR+ +  +H+ NAF + S  AKL   G G     + +  D+Q K    + V       D K  +++  D+IL G++ K
Sbjct:    9 SFRDQLWLSAYPLDRNLVFDYFALSPFYDRTCNNEQLRMEAIHPLDMTHLSKKTGMEYILHEA-----------------QEPHLFVIRKQKRDGPEKVSAQAAYYVLDGSIYQAPHLYNVIGSRVVRSLYHITNAFAQAS--AKLEKIGTG-----EADPADVQVKQSTTKFV-------DMKEVMRV--DSILAGIMRK 176
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BLAST of mRNA_Ecto-sp9_F_contig939.17546.1 vs.
Match: Mediator (of RNA polymerase II transcription subunit 6 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EGT8_BRELC)

HSP 1 Score: 111 bits (277), Expect = 2.120e-25
Identity = 61/158 (38.61%), Postives = 91/158 (57.59%), Query Frame = 3 
Query:   87 DPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQGVDPREGLLNLTGLEFMLVELPPEMSFLPPGHPAPAGPQPRRLFVIKKQVRKSPSSVEVQAIYYMMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDW 560
            D    SF D VWLQ + L  +  L YFALSPFYD++CNNE+ +MQ +   E L NL G+E+ L+             P  A   P++L++I+KQ R   + VE  A+YY+++G +YQAP +  ++ SRL K ++ +N AF  L+   +   + G Y W
Sbjct:    8 DDYNASFRDTVWLQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQRLG-LEQLKNLRGVEYELL-------------PNAAKQLPQQLYIIRKQRRNGRTQVEPLAVYYVLDGTVYQAPNIHAMLTSRLKKCSYRVNKAFHGLAAGVRFSPTEG-YAW 150
[Close]
BLAST of mRNA_Ecto-sp9_F_contig939.17546.1 vs.
Match: Mediator (of RNA polymerase II transcription subunit 6 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L744_PLAHL)

HSP 1 Score: 110 bits (275), Expect = 2.510e-25
Identity = 62/154 (40.26%), Postives = 91/154 (59.09%), Query Frame = 3 
Query:   63 MDFPGAAEDPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQ--GVDPREGLLNLTGLEFMLVELPPEMSFLPPGHPAPAGPQPRRLFVIKKQVRKSPSSVEVQAIYYMMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELS 518
            M+  G  +D    SF D VWLQ + L  +  L YFALSPFYD++CNNE+ +MQ  G+D    L NL G+E+ L+             P  A   P++L++I+KQ R   + VE  AIYY+++G +YQAP +  ++ SRL K ++ +N AF  L+
Sbjct:    1 MEVAGHVDD-YNASFRDTVWLQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQRLGLDQ---LKNLRGVEYELL-------------PNAAKQLPQQLYIIRKQRRNGRTQVEPLAIYYVLDGTVYQAPNIHAMLTSRLKKCSYRINKAFHGLA 137
[Close]
BLAST of mRNA_Ecto-sp9_F_contig939.17546.1 vs.
Match: Mediator (of RNA polymerase II transcription subunit 6 n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JVT5_PHYPA)

HSP 1 Score: 113 bits (282), Expect = 2.650e-25
Identity = 76/206 (36.89%), Postives = 106/206 (51.46%), Query Frame = 3 
Query:  102 SFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQGVDPRE--GLLNLTGLEFMLVELPPEMSFLPPGHPAPAGPQPRRLFVIKKQVRKSPSSVEVQAIYYMMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQK-----EAKDLQEKAEAAEGVGVAEEDRDAKAALKLSMDNILMGLVEK 698
            SF D +WL  + L      DYFALSPFYD+ CNNEQ RM+ + P +   L   TG+E++L E                  Q   LFVI+KQ R  P  V  QA YY+++G IYQAP +  +I SR+ +  +H+ NAF + S  AKL   G G D   +K     +  D+Q K    + V       D K  +++  D+IL G++ K
Sbjct:   17 SFRDQLWLSAYPLDRNLVFDYFALSPFYDRTCNNEQLRMEAIHPLDMTHLSKKTGMEYILHEA-----------------QEPHLFVIRKQKRDGPEKVSAQAAYYVLDGSIYQAPHLYNVIGSRVVRSLYHITNAFAQAS--AKLEKIGTGTDNENEKVVGEADPADVQVKQSTTKFV-------DMKEVMRV--DSILAGIMRK 194
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig939.17546.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Mediator2.850e-17795.85of RNA polymerase II transcription subunit 6 n=1 T... [more]
Mediator2.090e-10198.00of RNA polymerase II transcription subunit 6 n=1 T... [more]
Mediator1.590e-4544.91of RNA polymerase II transcription subunit 6 n=1 T... [more]
Mediator1.730e-2844.72of RNA polymerase II transcription subunit 6 n=1 T... [more]
Mediator2.930e-2835.51of RNA polymerase II transcription subunit 6 n=1 T... [more]
Mediator5.610e-2735.07of RNA polymerase II transcription subunit 6 n=15 ... [more]
Mediator6.680e-2636.82of RNA polymerase II transcription subunit 6 (Frag... [more]
Mediator2.120e-2538.61of RNA polymerase II transcription subunit 6 n=1 T... [more]
Mediator2.510e-2540.26of RNA polymerase II transcription subunit 6 n=1 T... [more]
Mediator2.650e-2536.89of RNA polymerase II transcription subunit 6 n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig939contigEcto-sp9_F_contig939:5355..9879 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score307.8
Seed ortholog evalue5.5e-81
Seed eggNOG ortholog2880.D7G6X0
Preferred nameMED6
KEGG koko:K01530,ko:K15128
GOsGO:0000151,GO:0000428,GO:0001128,GO:0003674,GO:0003676,GO:0003677,GO:0003712,GO:0003713,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005737,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006464,GO:0006725,GO:0006807,GO:0007275,GO:0007399,GO:0007406,GO:0008134,GO:0008150,GO:0008152,GO:0008285,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010721,GO:0016043,GO:0016070,GO:0016567,GO:0016591,GO:0016592,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019827,GO:0022008,GO:0022607,GO:0030154,GO:0030880,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032446,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0042127,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0045595,GO:0045596,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0051123,GO:0051171,GO:0051173,GO:0051239,GO:0051241,GO:0051252,GO:0051254,GO:0051960,GO:0051961,GO:0055029,GO:0060255,GO:0060284,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070647,GO:0070847,GO:0070897,GO:0071704,GO:0071824,GO:0071840,GO:0072091,GO:0080090,GO:0090304,GO:0090575,GO:0097159,GO:0097659,GO:0098727,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902494,GO:1902680,GO:1902692,GO:1903506,GO:1903508,GO:1990234,GO:2000026,GO:2000112,GO:2000177,GO:2000178,GO:2000647,GO:2001141
EggNOG free text desc.RNA polymerase II transcription coactivator activity involved in preinitiation complex assembly
EggNOG OGsCOG5097@1,KOG3169@2759
EC3.6.3.1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03021
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMediator complex, subunit Med6
Ec32 orthologEc-01_011940.1
Exons5
Model size1216
Cds size870
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931019.2019815-UTR-Ecto-sp9_F_contig939:5354..54161622931019.2019815-UTR-Ecto-sp9_F_contig939:5354..5416Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig939 5355..5416 +
1692278995.4324887-UTR-Ecto-sp9_F_contig939:5354..54161692278995.4324887-UTR-Ecto-sp9_F_contig939:5354..5416Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig939 5355..5416 +
1622931019.2867692-UTR-Ecto-sp9_F_contig939:9595..98791622931019.2867692-UTR-Ecto-sp9_F_contig939:9595..9879Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig939 9596..9879 +
1692278995.4852235-UTR-Ecto-sp9_F_contig939:9595..98791692278995.4852235-UTR-Ecto-sp9_F_contig939:9595..9879Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig939 9596..9879 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931019.218336-CDS-Ecto-sp9_F_contig939:5416..56191622931019.218336-CDS-Ecto-sp9_F_contig939:5416..5619Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig939 5417..5619 +
1692278995.4430375-CDS-Ecto-sp9_F_contig939:5416..56191692278995.4430375-CDS-Ecto-sp9_F_contig939:5416..5619Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig939 5417..5619 +
1622931019.2331798-CDS-Ecto-sp9_F_contig939:7186..72831622931019.2331798-CDS-Ecto-sp9_F_contig939:7186..7283Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig939 7187..7283 +
1692278995.4510643-CDS-Ecto-sp9_F_contig939:7186..72831692278995.4510643-CDS-Ecto-sp9_F_contig939:7186..7283Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig939 7187..7283 +
1622931019.2466865-CDS-Ecto-sp9_F_contig939:7767..79121622931019.2466865-CDS-Ecto-sp9_F_contig939:7767..7912Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig939 7768..7912 +
1692278995.4593995-CDS-Ecto-sp9_F_contig939:7767..79121692278995.4593995-CDS-Ecto-sp9_F_contig939:7767..7912Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig939 7768..7912 +
1622931019.258321-CDS-Ecto-sp9_F_contig939:8447..86231622931019.258321-CDS-Ecto-sp9_F_contig939:8447..8623Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig939 8448..8623 +
1692278995.4683657-CDS-Ecto-sp9_F_contig939:8447..86231692278995.4683657-CDS-Ecto-sp9_F_contig939:8447..8623Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig939 8448..8623 +
1622931019.2740543-CDS-Ecto-sp9_F_contig939:9346..95951622931019.2740543-CDS-Ecto-sp9_F_contig939:9346..9595Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig939 9347..9595 +
1692278995.476815-CDS-Ecto-sp9_F_contig939:9346..95951692278995.476815-CDS-Ecto-sp9_F_contig939:9346..9595Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig939 9347..9595 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig939.17546.1prot_Ecto-sp9_F_contig939.17546.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig939 5417..9595 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig939.17546.1

>prot_Ecto-sp9_F_contig939.17546.1 ID=prot_Ecto-sp9_F_contig939.17546.1|Name=mRNA_Ecto-sp9_F_contig939.17546.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=290bp
MDFPGAAEDPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQC
RMQGVDPREGLLNLTGLEFMLVELPPEMSFLPPGHPAPAGPQPRRLFVIK
KQVRKSPSSVEVQAIYYMMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVE
LSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVGVAEEDRDAKAALKL
SMDNILMGLVEKYIDGDGEGKEGKEPAARGAKRKADGEAATSASLDAASA
AATSTAATSTMATSTAATSSATPTTGGMTKTLAATKPTR*
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mRNA from alignment at Ecto-sp9_F_contig939:5355..9879+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig939.17546.1 ID=mRNA_Ecto-sp9_F_contig939.17546.1|Name=mRNA_Ecto-sp9_F_contig939.17546.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4525bp|location=Sequence derived from alignment at Ecto-sp9_F_contig939:5355..9879+ (Ectocarpus species9 EcSCA_722f female)
CCAGGGAGTAAACCGCCGGAAAGCAATCAACATCCTTGCAAGGAGAGACG
CGTGCGGTCTAGATGGATTTCCCTGGGGCAGCAGAAGACCCAGAGCAAAG
GTCGTTCATCGACCCGGTGTGGTTGCAGCAGTGGGGACTTGGGCCGGAGA
ACGCTTTGGACTACTTCGCTCTCAGCCCTTTCTACGACAAAGCATGCAAC
AACGAGCAGTGCAGGATGCAGGGCGTAGATCCACGGGAAGGGCTGCTGAA
CCTAACCGGGCTAGAGTGAGTGGTCTTGGGTGTGTGCCTTGACGTCGTGT
GCTGTCGTGGGTGAGCCGCTGCAGCTTGGGAGATCATGAATTGGCCGTTC
TCTTGCCGCAGTCTCCCGCCCGTTGGCGTGCGATCTTGTCCCTCCGCGAC
CCGTTGAGCCGCTGCCTATGTAGGCCTCTCATCTAGCAGCAGCCAGATGT
GGGTGGATGCAGTTCGCATGAGGGCGCATGGCCCGCAACATCTGTGTTGT
TTCGCAATTCACAAGGTTGTGCACTGCCCTGGGCAGTCTCGTTTGGTGGA
AGGTAGCCATATGATCCAGGCTGGGTATTTATCCCACCGCTTTCGCCCCT
AATCAGCAGTTACCGCACATCTGCATATCTGCATATGCATAGGCGCGAAG
TACTTATGCTTACAGCATGCACCACAGGATGAGAGGAAGTAGTACTGCCG
TGTGTCAAGTTAGCACGTTGCCGACGGCTCGAAGCGATCAAGGGTTCAAC
CGCTACGACCGAACAATGCAGAAGGTAACTGTGGTATAACCTCTGTATGC
TACATGTAGTCTACATCCCGTAGCCAATCTCGCATCTCGCAAGTCCTGGC
GGTTTTACTGCTACACGGGGTACTGTCTGCTGTACGGGGTAGGTATACAG
TAGCCCACCGATAGGGTCCACCTGCAGAGTTTTGATGACTAGCTTCCGGG
TGGGGCACTACCCCGCTACACCCCGCAAAAACCTACTGCTGTACACATTG
CCTCTTGCTCACCATATTTCAGCGCGTTTCGGAACTGTTTTTTTGGGTCA
GACAAACGGCCCCGAGAAGGCTCAGATTTTTAGTACCAATATTAATATTT
AGCTCTGAGACGACCCCACTTTCCGCCCACCGCTCAGACAAACACCCATC
ACCACCTTCAAAATATTTGAGGCATGGGTTGCTGTTCAGCTGCCTCATAT
TCATGTAATGCGAGACGAGTTCAGCACTCTCTTCCCTCTGTGTACACACG
AACTAGCGCTATCCACTAGGCCAGGAGCGGAAGCGAGAGAAAAAGTCACT
TTGCAAGAAAAGGTCGCTTACGTCGGGATCCGAACCCTTGACCTGACCTC
TAAATAGACGGTTTCGAGGATACCAACTAGACCACCGGGGCGACCGGCTT
AGAGTAGTAGATCATAAAAAGATGAAATCGCAGGGTACAGACTCGTCCGA
ATCTCATGTCACCACGACCGGACAGACCTGCCCCTCCGTTATGGTGTGTG
TCTACATTTTATATGTGGCGATAGAACAGCGCTCGCTGTGGAACCGAAAA
GCGTGGGATGAGGCAAGGTTCACCTGTCTTCTTACCTACAACCAATTCAG
GAGAACACCCAGAACATGAGCCGAAACTCCCCATTGCCTCTTGTTGGCCA
AGAACAATGTGTATACTCCTCTGGGTGGCCTAGCCCTTAGCACAACGTTG
CAAGTATAGTGTGCTACAGCTGGTTCAAAGCAAGGCCAACGTGAAACCAC
TTGCGAGAAGGCACATCTGGTGGACTGAGTGTTTTCTCCTCCTTCTTGGA
CGTACTGCTGTGTACCGTGTTCTGCGAATTAGGTTCATGTTGGTGGAGCT
CCCACCAGAAATGTCTTTCTTGCCACCGGGGCATCCAGCTCCAGCCGGGC
CGCAGCCTCGACGTCTCTTCGTAATCAAGGTGAGCCGTGTTGTGCTTGCG
CCACTCTGCGCGAGGCGTGTACGTACCTCGTTGGCACTGTCTACTGCCGG
TTTTAGTTGCTAGGTGAAGTACCATGTGGGCGGTTATGAACGAACCTGCC
GCAGCAGCAATATGCAGCATGCAGCCTTCGAGTCCGATGGGAGTCGGATG
GGCAACCGTGATCGGAGGGACACGCTGCCGTGTGCGGAATTCTCCAGTAT
TCCATCTGGTGGCGGTACCACCTCGTTGATAGTCCATCAAACGATCCTGG
ATAGTGTACATCAGCTCAGCACGGCGCATCCGTATGGCCACGGAGTCATG
TTGTAAGGCATACAGAAGTGGTCGGCGCTCGCACTCTCCAAGTACCGAGT
ACAAGTACCGAGTACCTGGTACCGCCTCTTTTGCGTTGATTACTGAACAC
GATGGTGCCATGCCCAAACCAGCTTACCAAAAGCAAAATGTTGCGATTTG
TTCCCCTGCCCAGAAACAAGTACGCAAGAGCCCGAGTTCGGTTGAGGTCC
AGGCGATCTACTACATGATGGAGGGCGTCATCTACCAAGCCCCCACGGTG
CAAAAGCTCATCAAGTCTCGTCTAAACAAGTTCACCCACCATCTCAACAA
CGCCTTTGGTGAGGCCGGCCTGGTCGTTTCGTTCTTAAGGCGGTGGTGAG
ACCTGATCTCTGCATTTGAATATGTAGAGTCGTTCATCCGTTTGTTGGTG
GAAGCTTCTGTTGTGCCGCACGCTGACCCGAGGGCAGGCGGTCGAGCATG
TGTTGAGGTTAGACAGGTTGGCGTGGATGATGCTGGGAGGTACCATTGTG
GGGGCTCCTCGTCTTTTAGCTGCATGTGTTTCTCGAAATAGTGATATTTC
GTTGTTTGGCGAGAGGAACATATAAATTTCCCATCCGAAGTGGACATTCG
CCTATCGCATCGCTCGAGGTTGCCGGTGAAGGAGGCTACTATATTGCTGT
CAGTGGAATGCAGACTCCCCATGATCATATCCCTAATCATTATGCGCACT
GCTGTGTATGCGCTTCAACAACTTAAAGCACAATCACGATGTGAAGGTCG
GAGAGCCGGGAGTTAGCCCCAACAACTCCCCGATACTACTGCTATTTTCT
TGCCCGTTCTGTTGTGACCGCCTCCACTGTTATCCCTTTCCAGTGGAGTT
GTCCAAGCTGGCGAAGCTGAGAGACTCTGGCGGGGGCTACGACTGGGCTT
GGCAGAAGGAGGCTAAAGATCTGCAGGAGAAGGCAGAGGCGGCCGAAGGT
GTTGGTGTGGCAGAGGAAGACAGAGACGCGAAAGCGGCCCTCAAGCTTTC
CATGGACAACATCCTCATGGTGAGCCTACCAATGTACTATGTAGTATGTA
TCAGGATGAGAGATGAAGCAACTTACATTTCGTGCCGTGGATGTGGTTGG
TGTCCATGCGGAAGTGAGGGTGGGTCATTTTGCACCGCGAACAGCTCGAG
TTGTTCAAAACCATTATACACGGAGCATGCTCGTTGTGGGCTTTACCATT
ACTGGAGGCTTTTTTTTTGTTGTTGTCGAAGAATCGCCTACAAGCGGTGT
TTCTGACTAACTGGGACTCGGGAACGTTGCAGACAGCGCCACCACGTAAG
TATGAATTTGGTCATTTAGCACTTGTGCCCCACCCCACACTCAAACCTAT
GATGGTACATTTTGCTTTCCCTGGAGCGAATGAGGAGCGAGCCTCGGGAA
AAATAAGAGGTTCGGAAATGGTAGTGGCGTCTGTAGTTGAATCGATGCCA
GTTTATTGCATTTGATGAAGGACCATGCATCCTCGGCCTTTTCTCGAAAG
TCGTTGATGCAACACCAGCGATGATGCCGCCACTTCACTCGAGGATGCAC
GTCTTTGGCCTGTTACTGCTACTGCTGGAAGTCAGATATCCTTTTCTACA
CCTACCAAGAGCGTTGTAATGGAAAATTCATCTGGTACGTACGCGAAAAA
GGCCATGACATCAGTCCTCGTCCGCTTGCCTAATTTTACGTTGGTTGTTC
CAATGCCGACGCCATTGTCTGCTCCTGTTCGTGTTATCCTAGGGTCTGGT
GGAGAAATACATCGACGGAGACGGGGAGGGCAAGGAAGGGAAGGAACCCG
CCGCTAGAGGGGCAAAGCGGAAGGCCGACGGCGAAGCCGCGACTAGCGCT
TCTCTCGATGCGGCAAGTGCTGCTGCTACCAGCACTGCTGCTACCAGCAC
TATGGCTACCAGCACTGCTGCTACCAGTAGTGCCACACCAACGACGGGCG
GCATGACGAAAACCCTTGCGGCAACGAAGCCCACTCGATGACACGTACAG
TATGATGGCGGCGTTGTCGTGGAAAGGAGGTTTTTAGGGGGTCTACTGCC
TCAAAAATTATACCACAGGGTGGCGAATAGTTATTCCTTGTGAGTCTAGA
ATTTTCGCCTTAGGTTACGCGTGCAGCGTTGGTTTTACTACTGTTTTTCG
TGGTCGGGTAGACGTTTTGTGCCTACAGTGCAGCCTTCCTGCAAAAGGCG
TGCAATACGCTGCCGTTTACTGTACAAAGTTAATGTGACGTAATAATACT
GGTCGTTTACGCTTGGTCCGAGGAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig939:5355..9879+

>mRNA_Ecto-sp9_F_contig939.17546.1 ID=mRNA_Ecto-sp9_F_contig939.17546.1|Name=mRNA_Ecto-sp9_F_contig939.17546.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1740bp|location=Sequence derived from alignment at Ecto-sp9_F_contig939:5355..9879+ (Ectocarpus species9 EcSCA_722f female)
ATGGATTTCCCTGGGGCAGCAGAAGACCCAGAGCAAAGGTCGTTCATCGA
CCCGGTGTGGTTGCAGCAGTGGGGACTTGGGCCGGAGAACGCTTTGGACT
ACTTCGCTCTCAGCCCTTTCTACGACAAAGCATGCAACAACGAGCAGTGC
AGGATGCAGGGCGTAGATCCACGGGAAGGGCTGCTGAACCTAACCGGGCT
AGAATGGATTTCCCTGGGGCAGCAGAAGACCCAGAGCAAAGGTCGTTCAT
CGACCCGGTGTGGTTGCAGCAGTGGGGACTTGGGCCGGAGAACGCTTTGG
ACTACTTCGCTCTCAGCCCTTTCTACGACAAAGCATGCAACAACGAGCAG
TGCAGGATGCAGGGCGTAGATCCACGGGAAGGGCTGCTGAACCTAACCGG
GCTAGAGTTCATGTTGGTGGAGCTCCCACCAGAAATGTCTTTCTTGCCAC
CGGGGCATCCAGCTCCAGCCGGGCCGCAGCCTCGACGTCTCTTCGTAATC
AAGGTTCATGTTGGTGGAGCTCCCACCAGAAATGTCTTTCTTGCCACCGG
GGCATCCAGCTCCAGCCGGGCCGCAGCCTCGACGTCTCTTCGTAATCAAG
AAACAAGTACGCAAGAGCCCGAGTTCGGTTGAGGTCCAGGCGATCTACTA
CATGATGGAGGGCGTCATCTACCAAGCCCCCACGGTGCAAAAGCTCATCA
AGTCTCGTCTAAACAAGTTCACCCACCATCTCAACAACGCCTTTGAAACA
AGTACGCAAGAGCCCGAGTTCGGTTGAGGTCCAGGCGATCTACTACATGA
TGGAGGGCGTCATCTACCAAGCCCCCACGGTGCAAAAGCTCATCAAGTCT
CGTCTAAACAAGTTCACCCACCATCTCAACAACGCCTTTGTGGAGTTGTC
CAAGCTGGCGAAGCTGAGAGACTCTGGCGGGGGCTACGACTGGGCTTGGC
AGAAGGAGGCTAAAGATCTGCAGGAGAAGGCAGAGGCGGCCGAAGGTGTT
GGTGTGGCAGAGGAAGACAGAGACGCGAAAGCGGCCCTCAAGCTTTCCAT
GGACAACATCCTCATGTGGAGTTGTCCAAGCTGGCGAAGCTGAGAGACTC
TGGCGGGGGCTACGACTGGGCTTGGCAGAAGGAGGCTAAAGATCTGCAGG
AGAAGGCAGAGGCGGCCGAAGGTGTTGGTGTGGCAGAGGAAGACAGAGAC
GCGAAAGCGGCCCTCAAGCTTTCCATGGACAACATCCTCATGGGTCTGGT
GGAGAAATACATCGACGGAGACGGGGAGGGCAAGGAAGGGAAGGAACCCG
CCGCTAGAGGGGCAAAGCGGAAGGCCGACGGCGAAGCCGCGACTAGCGCT
TCTCTCGATGCGGCAAGTGCTGCTGCTACCAGCACTGCTGCTACCAGCAC
TATGGCTACCAGCACTGCTGCTACCAGTAGTGCCACACCAACGACGGGCG
GCATGACGAAAACCCTTGCGGCAACGAAGCCCACTCGATGAGGTCTGGTG
GAGAAATACATCGACGGAGACGGGGAGGGCAAGGAAGGGAAGGAACCCGC
CGCTAGAGGGGCAAAGCGGAAGGCCGACGGCGAAGCCGCGACTAGCGCTT
CTCTCGATGCGGCAAGTGCTGCTGCTACCAGCACTGCTGCTACCAGCACT
ATGGCTACCAGCACTGCTGCTACCAGTAGTGCCACACCAACGACGGGCGG
CATGACGAAAACCCTTGCGGCAACGAAGCCCACTCGATGA
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