mRNA_Ecto-sp9_F_contig939.17545.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig939.17545.1
Unique NamemRNA_Ecto-sp9_F_contig939.17545.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig939.17545.1 vs.
Match: 60S (ribosomal protein L13a n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6W9_ECTSI)

HSP 1 Score: 387 bits (995), Expect = 1.450e-132
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 1 
Query:    1 MFEAPVTVDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYDKKKRMVVPNALQVIRMAPGRRFCVLGRLSEEVGWPHAELIKRLEAQRKIKSEAYYVDKKAAKQLKDKATAEANLAAVAPVLEEYGF 594
            MFEAPVTVDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYDKKKRMVVPNALQVIRMAPGRRFCVLGRLSEEVGWPHAELIKRLEAQRKIKSEAYYVDKKAAKQLKDKATAEANLAAVAPVLEEYGF
Sbjct:    1 MFEAPVTVDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYDKKKRMVVPNALQVIRMAPGRRFCVLGRLSEEVGWPHAELIKRLEAQRKIKSEAYYVDKKAAKQLKDKATAEANLAAVAPVLEEYGF 198
[Close]
BLAST of mRNA_Ecto-sp9_F_contig939.17545.1 vs.
Match: 60S (ribosomal protein L13a n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9N1_9STRA)

HSP 1 Score: 285 bits (730), Expect = 2.190e-92
Identity = 142/197 (72.08%), Postives = 169/197 (85.79%), Query Frame = 1 
Query:    1 MFEAPVTVDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYDKKKRMVVPNALQVIRMAPGRRFCVLGRLSEEVGWPHAELIKRLEAQRKIKSEAYYVDKKAAKQLKDKATAEANLAAVAPVLEEYG 591
            + E PV VDGRGHLLGRLAS+VAK+LL GQKV+VVR EQI ISGSLVRNKVKY Q++KKR NTNP RGP+HFRSPARIFWRT+RGM+P KT RG+ A+ARL  FEGIPAP+DK+KRMVVP AL+V+R+APGR+ CVLGRLS EVGW H +L++RLEA+RK++SEA+Y  KKA  QL+ KA A A+L+AV PVLE YG
Sbjct:    2 VLEKPVVVDGRGHLLGRLASIVAKQLLSGQKVIVVRAEQIVISGSLVRNKVKYAQFRKKRMNTNPARGPFHFRSPARIFWRTIRGMIPHKTHRGQLAMARLKAFEGIPAPFDKQKRMVVPAALKVLRLAPGRKHCVLGRLSTEVGWRHGDLVERLEAKRKVRSEAFYQKKKANAQLRVKAEAAADLSAVTPVLESYG 198
[Close]
BLAST of mRNA_Ecto-sp9_F_contig939.17545.1 vs.
Match: 60S (ribosomal protein L13a n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z3W8_PORPP)

HSP 1 Score: 255 bits (651), Expect = 1.770e-80
Identity = 128/197 (64.97%), Postives = 155/197 (78.68%), Query Frame = 1 
Query:    1 MFEAPVTVDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYDKKKRMVVPNALQVIRMAPGRRFCVLGRLSEEVGWPHAELIKRLEAQRKIKSEAYYVDKKAAKQLKDKATAEANLAAVAPVLEEYG 591
            M+E+ V VD R HLLGRLAS+VAKELL GQKVVV RCE I +SG  +R K KY+ + +KR NTNP RGP+HFR+P+RIFWRTVRGMLP KT RG+EAL RL  FEGIP PYDK KRMVVP+AL+V+R+AP R+ CVLGRLS EVGW + +++ RLE +RK+ S AYY  KKA  +LK KAT  A+L+ V PVLE +G
Sbjct:    1 MYESVVVVDARAHLLGRLASIVAKELLCGQKVVVTRCEAIEMSGRFIRKKNKYLMFLRKRMNTNPSRGPFHFRAPSRIFWRTVRGMLPHKTERGQEALGRLKVFEGIPPPYDKMKRMVVPDALRVVRLAPRRKHCVLGRLSHEVGWKYQDVLARLETKRKVHSAAYYQRKKALDKLKRKATESADLSKVTPVLEAFG 197
[Close]
BLAST of mRNA_Ecto-sp9_F_contig939.17545.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3B4_AURAN)

HSP 1 Score: 254 bits (648), Expect = 5.180e-80
Identity = 128/197 (64.97%), Postives = 156/197 (79.19%), Query Frame = 1 
Query:    1 MFEAPVTVDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYDKKKRMVVPNALQVIRMAPGRRFCVLGRLSEEVGWPHAELIKRLEAQRKIKSEAYYVDKKAAKQLKDKATAEANLAAVAPVLEEYG 591
            +F+  V VDGR H+LGRLAS++AKELL GQKVVVVRCEQ+ +SGSLVRNKVK+  + KKR NTNPKRGP H+RSPAR+ WRTVRGMLP KT RG++ALARL CFEG+P PYDK K+MVVP AL+V+R+ PGRRF VL RL+ E GW H  LI ++E +R  +S  +Y  KK+A  LK KATA A+L+ VA VLE +G
Sbjct:    2 VFQDSVLVDGRTHMLGRLASIIAKELLCGQKVVVVRCEQLCVSGSLVRNKVKFTAFLKKRTNTNPKRGPIHYRSPARMLWRTVRGMLPHKTHRGQQALARLQCFEGVPPPYDKMKKMVVPEALKVLRLKPGRRFTVLARLASEFGWKHEALIAKMEEKRVARSAEFYAAKKSATALKAKATAAADLSKVADVLEAFG 198
[Close]
BLAST of mRNA_Ecto-sp9_F_contig939.17545.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LS12_9EUKA)

HSP 1 Score: 253 bits (646), Expect = 8.770e-80
Identity = 125/183 (68.31%), Postives = 151/183 (82.51%), Query Frame = 1 
Query:   16 VTVDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYDKKKRMVVPNALQVIRMAPGRRFCVLGRLSEEVGWPHAELIKRLEAQRKIKSEAYYVDKKAAKQLKDKATAEANLAA 564
            V +DG+GHLLGRL S++AK+LL G+KVVVVRCE + ISGSL RNKVKY Q+ KKR NTNP RGP+HFRSPARIFWRT+RGMLP KT RG+ ALARL+CFEGIP PYDKKKR+VVP+AL+ +R+   R F VLG LS+EVGW + +L+ +LEAQRKIK +AYY +KKA   LK KA A A+L+A
Sbjct:   12 VVIDGKGHLLGRLCSIIAKQLLFGKKVVVVRCEALIISGSLTRNKVKYAQFMKKRMNTNPNRGPFHFRSPARIFWRTLRGMLPHKTVRGQSALARLACFEGIPEPYDKKKRVVVPSALKSLRLRADRNFTVLGELSKEVGWGYTDLVAKLEAQRKIKEQAYYAEKKAQVALKSKAAASADLSA 194
[Close]
BLAST of mRNA_Ecto-sp9_F_contig939.17545.1 vs.
Match: Hypothetical (protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TDT8_9RHOD)

HSP 1 Score: 253 bits (646), Expect = 1.000e-79
Identity = 126/198 (63.64%), Postives = 155/198 (78.28%), Query Frame = 1 
Query:    1 MFEAPVTVDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYDKKKRMVVPNALQVIRMAPGRRFCVLGRLSEEVGWPHAELIKRLEAQRKIKSEAYYVDKKAAKQLKDKATAEANLAAVAPVLEEYGF 594
            MF  PV VDGRGHLLGRLAS VAKELL GQ+VVVVRCE I  SG  +RNK KY+ + +KR NTNP RGP HFRSP+++FWRTVRGMLP KT RG +ALARL  FEGIPAPYDK KRMVVPNAL+V+R+ P R++C LGR++ EVGW +A+++ RLEA+RK+ SEAYY  KKA  +L+ +A A A +  +   L+ YG+
Sbjct:    1 MFSGPVVVDGRGHLLGRLASTVAKELLNGQQVVVVRCEDIDQSGKFIRNKNKYLIFLRKRMNTNPTRGPIHFRSPSKMFWRTVRGMLPHKTQRGADALARLKVFEGIPAPYDKTKRMVVPNALRVLRLRPDRKYCRLGRIASEVGWKYADVVDRLEAKRKVSSEAYYEKKKAEGKLRVQAKANAAIQEMETKLQNYGY 198
[Close]
BLAST of mRNA_Ecto-sp9_F_contig939.17545.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQI9_9STRA)

HSP 1 Score: 253 bits (646), Expect = 1.040e-79
Identity = 128/199 (64.32%), Postives = 160/199 (80.40%), Query Frame = 1 
Query:    1 MFEAPVT-VDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYDKKKRMVVPNALQVIRMAPGRRFCVLGRLSEEVGWPHAELIKRLEAQRKIKSEAYYVDKKAAKQLKDKATAEANLAAVAPVLEEYGF 594
            MF    T +D RGHLLGRLAS++AKELL GQKV VVRCE+I ++GSL+RNKVK+  Y++KRH TNPK+GP H+RSPAR+ WR VRGMLP KTARG+ ALARL+ FEGIPAPYDKKKR+VVP AL+V+R+ PGR+F VL  L+ EVGW H +LI+RLE +RK++++A+Y  KKAA   K  ATA  +L+AV PVLE  G+
Sbjct:    1 MFSPNATLIDARGHLLGRLASIIAKELLCGQKVTVVRCEEICVTGSLLRNKVKWANYRRKRHLTNPKKGPIHYRSPARMLWRVVRGMLPHKTARGQAALARLATFEGIPAPYDKKKRVVVPEALKVLRLQPGRKFTVLKTLANEVGWKHKDLIERLENKRKLEAQAFYEKKKAAAAQKRAATAAVDLSAVTPVLEANGY 199
[Close]
BLAST of mRNA_Ecto-sp9_F_contig939.17545.1 vs.
Match: 60s (ribosomal protein l13a n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSL6_9STRA)

HSP 1 Score: 253 bits (647), Expect = 1.170e-79
Identity = 128/196 (65.31%), Postives = 159/196 (81.12%), Query Frame = 1 
Query:   16 VTVDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYDKKKRMVVPNALQVIRMAPGRRFCVLGRLSEEVGWPHAELIKRLEAQRKIKSEAYYVDKKA---AKQLKDKATAEANLAAVAPVLEEYGF 594
            V +DGRGHLLGRL+S+VAKELL GQKVVVVRCE++ ISG LVRN  +YMQ+ +KR NTNPKRGP+H+R+P+RI WRT+RGMLP KT RG +ALARL+ FEGIPAPYD KKR+VVP AL+++R+ PGRRFC L RL+ EVGW H +L+ RLEA+RKIK+EAYY  KKA   AK L ++  A + L+AV  VL  +G+
Sbjct:    8 VVIDGRGHLLGRLSSIVAKELLSGQKVVVVRCEELMISGGLVRNHTRYMQFLRKRTNTNPKRGPFHYRAPSRILWRTIRGMLPHKTFRGAQALARLTTFEGIPAPYDTKKRVVVPQALKILRLKPGRRFCTLSRLAHEVGWGHRDLVARLEAKRKIKAEAYYQQKKAGTAAKALAERKAA-SELSAVNNVLAGFGY 202
[Close]
BLAST of mRNA_Ecto-sp9_F_contig939.17545.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NQ00_HETAK)

HSP 1 Score: 251 bits (641), Expect = 5.680e-79
Identity = 132/198 (66.67%), Postives = 157/198 (79.29%), Query Frame = 1 
Query:    1 MFEAPVTVDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYDKKKRMVVPNALQVIRMAPGRRFCVLGRLSEEVGWPHAELIKRLEAQRKIKSEAYYVDKKAAKQLKDKATAEANLAAVAPVLEEYGF 594
            MFE  V VDGRGHLLGRLAS+VAK+LL GQKVV+VR E+I +SGSL+R K ++ Q+ KKR NTNPKRGP HFRSPA+IFWRTVRGM+P KT RG  A+ARL CFEGIP P+DKKKRMVVP AL+V+R+   R+   LG L+ EVGW  A LI+RLEA+RKI+S+AYY+ KKAA  LK KA AEA+L+ VA VL   G 
Sbjct:    1 MFEDTVVVDGRGHLLGRLASIVAKQLLCGQKVVLVRAEEIVMSGSLIRKKTQFAQWLKKRTNTNPKRGPIHFRSPAKIFWRTVRGMIPHKTVRGTAAMARLQCFEGIPHPWDKKKRMVVPEALKVLRLKAHRKNTKLGTLAGEVGWEKAGLIERLEAKRKIRSQAYYLKKKAAVVLKTKAAAEADLSPVAAVLAPLGM 198
[Close]
BLAST of mRNA_Ecto-sp9_F_contig939.17545.1 vs.
Match: Hypothetical (protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2DZL3_9STRA)

HSP 1 Score: 251 bits (640), Expect = 8.600e-79
Identity = 128/200 (64.00%), Postives = 157/200 (78.50%), Query Frame = 1 
Query:    1 MFEAPVTVDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYDKKKRMVVPNALQVIRMAPGRRFCVLGRLSEEVGWPHAELIKRLEAQRKIKSEAYYVDKKAAKQLKDKA--TAEANLAAVAPVLEEYGF 594
            M E  + VDGR HLLGRLASVVAKELL GQKVV+VRC+Q+ ISGSLVRNKVKY Q++KKR NTNP +GPYHF+SPA++ WRT+RGM  +KTARG+EALARLS FEGIP PYDKKKR V+P AL+V+R+ P R + VLG L+  VGW H +L+KRLE +RK+++ A+Y  KKA  QL++KA   A   LA V  VLE  G+
Sbjct:    1 MLENTIIVDGRDHLLGRLASVVAKELLSGQKVVIVRCDQVCISGSLVRNKVKYAQFRKKRMNTNPSKGPYHFKSPAKMVWRTIRGMCHQKTARGQEALARLSTFEGIPHPYDKKKRQVIPAALRVMRLKPSRNYTVLGELANAVGWKHQDLLKRLEDKRKVRAAAFYEKKKAKTQLREKAEKAAAGELAKVNEVLEASGY 200
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig939.17545.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
60S1.450e-132100.00ribosomal protein L13a n=2 Tax=Ectocarpus TaxID=28... [more]
60S2.190e-9272.08ribosomal protein L13a n=1 Tax=Tribonema minus Tax... [more]
60S1.770e-8064.97ribosomal protein L13a n=1 Tax=Porphyridium purpur... [more]
Uncharacterized5.180e-8064.97protein n=1 Tax=Aureococcus anophagefferens TaxID=... [more]
Hypothetical8.770e-8068.31protein (Fragment) n=1 Tax=Coccolithus braarudii T... [more]
Hypothetical1.000e-7963.64protein n=1 Tax=Compsopogon caeruleus TaxID=31354 ... [more]
Hypothetical1.040e-7964.32protein n=1 Tax=Phaeomonas parva TaxID=124430 RepI... [more]
60s1.170e-7965.31ribosomal protein l13a n=1 Tax=Nannochloropsis gad... [more]
Hypothetical5.680e-7966.67protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
Hypothetical8.600e-7964.00protein n=1 Tax=Helicotheca tamesis TaxID=374047 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig939contigEcto-sp9_F_contig939:238..5167 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score391.0
Seed ortholog evalue3.4e-106
Seed eggNOG ortholog2880.D7G6W9
Preferred nameRPL13A
KEGG rclassRC01978
KEGG koko:K02872,ko:K03644
KEGG ReactionR07767,R07768
KEGG Pathwayko00785,ko01100,ko03010,map00785,map01100,map03010
KEGG ModuleM00177
GOsGO:0000184,GO:0000956,GO:0002181,GO:0002237,GO:0002376,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006928,GO:0006935,GO:0006950,GO:0006952,GO:0006955,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0007275,GO:0007423,GO:0008104,GO:0008150,GO:0008152,GO:0008407,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009653,GO:0009719,GO:0009887,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010212,GO:0010224,GO:0010243,GO:0010332,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0014070,GO:0014074,GO:0015031,GO:0015833,GO:0015934,GO:0016070,GO:0016071,GO:0016477,GO:0017148,GO:0019222,GO:0019439,GO:0019538,GO:0022416,GO:0022625,GO:0022626,GO:0023052,GO:0030323,GO:0030324,GO:0030595,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031333,GO:0032268,GO:0032269,GO:0032496,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0033993,GO:0034097,GO:0034248,GO:0034249,GO:0034341,GO:0034613,GO:0034641,GO:0034644,GO:0034645,GO:0034655,GO:0035295,GO:0040011,GO:0042221,GO:0042330,GO:0042592,GO:0042886,GO:0043043,GO:0043170,GO:0043207,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043603,GO:0043604,GO:0044087,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045087,GO:0045184,GO:0045947,GO:0046483,GO:0046683,GO:0046700,GO:0046907,GO:0048246,GO:0048513,GO:0048519,GO:0048523,GO:0048731,GO:0048856,GO:0048870,GO:0050789,GO:0050794,GO:0050896,GO:0050900,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051591,GO:0051641,GO:0051649,GO:0051674,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0060326,GO:0060425,GO:0060541,GO:0065007,GO:0065008,GO:0070727,GO:0070887,GO:0070972,GO:0071214,GO:0071310,GO:0071320,GO:0071345,GO:0071346,GO:0071407,GO:0071417,GO:0071478,GO:0071479,GO:0071480,GO:0071482,GO:0071493,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0097159,GO:0097452,GO:0097529,GO:0104004,GO:1901193,GO:1901194,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1904688,GO:1904689,GO:1905517,GO:1990904,GO:2000112,GO:2000113,GO:2000765,GO:2000766
EggNOG free text desc.Belongs to the universal ribosomal protein uL13 family
EggNOG OGsCOG0102@1,KOG3204@2759
EC2.8.1.8
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosomal protein L13, eukaryotic/archaeal
Ec32 orthologEc-01_011950.1
Exons5
Model size1241
Cds size597
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig939.17545.1prot_Ecto-sp9_F_contig939.17545.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig939 882..5167 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931019.072441-UTR-Ecto-sp9_F_contig939:237..8811622931019.072441-UTR-Ecto-sp9_F_contig939:237..881Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig939 238..881 -
1692278995.376022-UTR-Ecto-sp9_F_contig939:237..8811692278995.376022-UTR-Ecto-sp9_F_contig939:237..881Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig939 238..881 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931019.0937972-CDS-Ecto-sp9_F_contig939:881..10101622931019.0937972-CDS-Ecto-sp9_F_contig939:881..1010Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig939 882..1010 -
1692278995.3868775-CDS-Ecto-sp9_F_contig939:881..10101692278995.3868775-CDS-Ecto-sp9_F_contig939:881..1010Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig939 882..1010 -
1622931019.1105769-CDS-Ecto-sp9_F_contig939:2437..25991622931019.1105769-CDS-Ecto-sp9_F_contig939:2437..2599Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig939 2438..2599 -
1692278995.395216-CDS-Ecto-sp9_F_contig939:2437..25991692278995.395216-CDS-Ecto-sp9_F_contig939:2437..2599Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig939 2438..2599 -
1622931019.1258028-CDS-Ecto-sp9_F_contig939:3269..33291622931019.1258028-CDS-Ecto-sp9_F_contig939:3269..3329Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig939 3270..3329 -
1692278995.403394-CDS-Ecto-sp9_F_contig939:3269..33291692278995.403394-CDS-Ecto-sp9_F_contig939:3269..3329Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig939 3270..3329 -
1622931019.1419592-CDS-Ecto-sp9_F_contig939:4239..43491622931019.1419592-CDS-Ecto-sp9_F_contig939:4239..4349Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig939 4240..4349 -
1692278995.4147992-CDS-Ecto-sp9_F_contig939:4239..43491692278995.4147992-CDS-Ecto-sp9_F_contig939:4239..4349Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig939 4240..4349 -
1622931019.1580234-CDS-Ecto-sp9_F_contig939:5031..51671622931019.1580234-CDS-Ecto-sp9_F_contig939:5031..5167Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig939 5032..5167 -
1692278995.4232612-CDS-Ecto-sp9_F_contig939:5031..51671692278995.4232612-CDS-Ecto-sp9_F_contig939:5031..5167Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig939 5032..5167 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig939.17545.1

>prot_Ecto-sp9_F_contig939.17545.1 ID=prot_Ecto-sp9_F_contig939.17545.1|Name=mRNA_Ecto-sp9_F_contig939.17545.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=199bp
MFEAPVTVDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNK
VKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALAR
LSCFEGIPAPYDKKKRMVVPNALQVIRMAPGRRFCVLGRLSEEVGWPHAE
LIKRLEAQRKIKSEAYYVDKKAAKQLKDKATAEANLAAVAPVLEEYGF*
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mRNA from alignment at Ecto-sp9_F_contig939:238..5167-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig939.17545.1 ID=mRNA_Ecto-sp9_F_contig939.17545.1|Name=mRNA_Ecto-sp9_F_contig939.17545.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4930bp|location=Sequence derived from alignment at Ecto-sp9_F_contig939:238..5167- (Ectocarpus species9 EcSCA_722f female)
ATGTTCGAGGCACCCGTTACCGTGGATGGTCGCGGGCACCTTCTCGGGCG
CCTGGCGTCCGTCGTGGCGAAGGAGCTGCTTGGCGGCCAGAAGGTGGTCG
TCGTGCGGTGCGAGCAGATCACCATCAGCGGCTCTCGTGAGTTACCACCC
CCATTCTGCTCGTAGGTGTTGATCGCTTGTTGCCTCACCCGATTCCCGGA
GACAACTCACGAGGCTCCTTGTCCACACCCTGGGCGAAGAGAGCATTGCT
CGCGAGTTGGGGTTGCGGTGTTGGTTTTGAGACTGGAGCAATAGAGGATG
CGTTGGCCTGTTTTGGGGTTGGAGAGGAAATAGACTTGGGCGTTGACTCG
TAGGTTCGTGGTGACCAGTCGATGCGGGCAACCGCGATGCCAAAGGGCGT
TCTGCGAACAGCGGTAGCCTTCTTGACAAGCGGTGCAAGCCGGCTGCTAG
CAGCGTCTCCGAGGTTTCAGGCTGGTGGCCCACTTCGTGATTGCGGTGGT
TGTTCGGAAAGCTGACACAACTCACGCGGTGCCTTCTCCATGCATGCTCG
AAACAAAAGCAGAGACGGCCTGCTATGTGTATTCAGTCTCCGTGTCAGAA
GAGGTTGTTGGAGGAAGCCATAGTCTACTGTGCCTCCCGCTGCACACCGG
TCCCCCATCTTCCGGTAGAGTAAAAGGCTAGCGGCCCGCCCATTGGGGGT
GCAATTGTTGATTTCGTAGGAGAGGCCGATGTAATAATACACCAATAGCA
TTGCTGTCCCTGTACGGCAACCTTGGCGCTCAACTCTCCTTATCCCTCCA
TGATCGATCGCATGGCAGTGGTCCGTAACAAGGTGAAGTACATGCAGTAC
AAGAAGAAGAGGCACAACACCAACCCCAAGCGCGGCCCGTACCACTTCCG
CTCGCCTGCCCGCATCTTCTGGCGGACGGTGAGCCTCGTCACTTTGTGCA
GGAGCAGCTGCAAGGCGTGCTTGTGTATCAGTATGTAACTTTGCCACCTT
TCCCTGTGTTCGAGTGTGATTCGACAGATCCGCCCCATACCTGCGCAAGT
GCACAACGCTGCTGTACTATAAAATACTTCGTTTTGGGGTGTGGTGCTCA
AGAGCGCTCGGCCGTGTTGGTGTGTGTACGTTATAATGGAACCGGGTGTT
GACGCCGTGACTCCCCTTCTCGCTTGTTGCTTTTGCACTTGAGAGAGATG
AGTCGTATCATGCTTACAGTAGTACGATATCATCCCCGAGTCTTCCGGTA
GAGTCTTTCCGACTCTTGACCATTTGGGGTACAGACGCCCTTTTGACCGA
CCCACGACGGAGTGTAGGCTCTTTCGAAACCTCATGCGCCCGGTGAATTG
GGCCATGTACGCACGTGGCAGTGCAAATATCAACCTCAAATATCGGCCGC
AATAGCGTGTACCGCCTGTCCGATCGTGCGAGTGATGCTGAGAACGTAGT
CTTTCGAAGTTCCAGTGCTTTGTAGACTGGCGCACAAAAGTAGTAGAGAA
GTGTCGTTCCCCCCACCCAATTTATCGACCACAGGACAAGTTTTCAGTTA
GCAGAGGCGAATGATTCATCTCCAGAGCCGTTGCCGAGGTCGATTCTACC
CTTGTCTGCACCGCTTCTAACCCTCCTCGCTGTCGAAAATCATCATGGGG
GAAGGTTAAGATTCTCCTGGCACCGCCCCTCTCCCCGGGGACGAGAAGAC
CGATGCCTACTGAAAGCTTTACATCTGCCCTATCATGGATCATAGTTGGT
GTGCGACGAACCTCGGTAGCGATCGTCTTCGTTCTGACTGTTGCAAATGT
TGGTGGTGGCTGTGTGCTGCGTGCTTTTGTACCGACAGGTGAGGGGAATG
CTCCCCCGCAAGACCGCCAGGGGCGAGGAGGCGCTCGCACGCCTCTCGGT
AAGCAATCAAACAGCAGTAAGATAGCAGTACCAGGTATCAGATAGATAGG
CGGAGAGGGACGGTTGGCTGAATCGCAATTGCATCCGCTGCTGGTTACCG
TAGGTAGTGGAGAGCTGAAAATAGGTGCTCGTTGCTTTGTTGAATGCTAG
AATACCGTGGGTGATGTATTGGTGTGCTTGCATCGATTTATTGGGCGGCG
GATCAGTCATCGCCGTTACAGTTCTACCGGATCCCGCCGCTTGGGAGGCA
ACAGCAGGAGTAGGAGATGTGTAGACGTCTTTTCTGCGAAAGTATGATGT
CTAGCGCTTGCTGAGTCGTTTTTGTGCACAAGGGGCAGTAAAAATGGCGA
CAACTATCATATGACAAGGGCCATCGTTCTACTGGATATTCGCGCGTGTG
CCATCCTGGCGGAGTCTGATGATAGTTAGCGCAGGCAGCAGAAGCAGAAG
CAGGCAGCCCTCTATCGCGTTCTGCGGGAAGCCGCATATGATAGGTCTTG
CACCCCATTGTTGCAGGCCCTACTATCATAGCCCTCGGCTGGTTGGTATG
GTTTATCCATTTCGACGCTCCCGATGAAGAATATTTCCTCCCCCTGCTCC
AAAGCTACCTGTCGATGGCGTGACATGTGTTAAATTGCTGCTGTTGTATC
TGTTGCTGTTTTCCGCAGTGCTTCGAGGGCATCCCGGCCCCCTACGACAA
GAAGAAGCGTATGGTCGTACCTAACGCCCTTCAGGTGATCAGGATGGCAC
CCGGCCGCCGCTTCTGCGTGCTCGGACGCCTCTCCGAGGAGGTCGGATGG
CCGCACGCAGAACTCATCAAGCGCCTCGAGGTAAACAACACTAAACGCAG
TACTCACTGAGTCCACGATGAAAAACATACCAAGGGATGCTAGATGCCAG
CTTTTTGTTGATGTGACGAGATGTGCAACGGCTTTCGATTGTGGCGCTGT
TTCATGTATCATTTCCTGTTGAGAGAGGTTCTGTGGCGTATATTTGCTTC
TCCGGAAGAATCACGATGCACCAGCTTTGTATACGTCGCGTTAGACGGAC
CAAACGCTATTGGTGCCTGTTGCTTCACTGCAGAAAGCGCTAGAATGACC
TTTACATGTAAGAGATCTGATAGTCTGCTTGACGCTTACCACGTCCTAGG
AAGAAGGCTATCTCCCTACAACTGTCCCCGAGGCAAGGCATACGTGGACG
AAAGTCGTGCATGTACAAATGACTGGGTGCACCCGAGTTCATTCTAGTTG
TGCGGAGTAACAGCAATGCACCCTATCGAATGGAAAGTATGGTGTTTTCT
TGGCGCTCCTGCGATTTATTGCTAGCCATTTGACCTTTGACCTGGTGTAC
CTTGTCACCCGGTTGTCGTCATCATCATGATGTTGTGGACAGTAGACAGC
ATCCTATGGGTCGAGTCTTCCCGCTCGTGTCCGGTGGTTTGGTATCCAAA
TCCGATTGATACCTTTCCAAAATGATTTTGACGCTTGATAGGATAACACA
AAACAAAGAGCTGTTGACTAGTTTTCGTCTACGTAGCCGGAGCAGTGCGA
GCAGTGCGTACACATGTCACTGATGCGGTGGTTGTACCCTGACTTGGAGC
AGTACGCTGAGTTGCTTGACCACTTCGCTGCCGGTGTCAAGAGTGTTTCT
TGGTGTTGACGCACGCACACCACGCGCACAGCGTTGCTGCAGCCGGCGAA
TATACTCTCTTGAATGTATGTGCTTCACACGATGTCGTGGGTGGGTTGTG
TTCCAAGTTATCTTGTCTTCTCATGGTGGCGTACTACTCCGGGATACATA
CATTTGTAGCAGCATCTGCTGTTTTCCCTTTTGACCCAACATAACGCGTG
CCCGAAACACGGCTCGTACGGTAGAGATGGTGGGGTGACATTTAGCCGCT
CCAAACGATGACACTGCTGTGTCGAGCCGTCACCTGCGGCGTGCCACGCT
GCCTACCCAACCCTTGAGGATCGATGTCAATTCTGGACGATTGCGTCAGG
CCGAGCATTTGCTCCGTTGATGCGTGTGTTGACCCCGCTGCTTTTGACAT
AGCGCTATTCCACTATTGTACGCTTGTCGAGCTGGGCGCTTTCGCCCCTT
TGCGACACTTTGGTGGTGTGTTTGGCATCATGTATCTTCCTTCCAGGTAG
ATCAATAAAGGTGCCACCAACCAACCAGCAAATGCAACGTTCTTGACTTG
CGTTGTTTCTCTTCCCTGACTCCTGCCCCCGCATTATTGTTTCGTGCGCT
CGCTCAGGCCCAGCGCAAGATCAAGTCGGAGGCGTACTACGTGGACAAGA
AGGCGGCGAAGCAGCTCAAGGACAAGGCCACGGCAGAGGCCAACTTGGCT
GCCGTTGCGCCCGTGCTCGAGGAGTACGGCTTCTAATCGAACTCCAACTC
CACCGCCATTCCGTACCGCTGCTGCAGCAGTTGTATCTCTCCTAGCCGTT
GCGGCTAGGCTCTCTGCTCGTAGTTTGTTCGCCGCGCTGGGTGCTTTACT
TTCTTCGTTTAAAGGGAGGAGGTGGCGTGTGTGCGCGTTGGGACAAGTTC
TAGCTTGGTTGGCGGGGGTGGGGGGTACAGCATGGTCGTGGTAGTTTCGC
GGGATCATGGTGTGGGATAAATGTCCGACGGATCTTCACGTGTTTTTCTT
TTCTTTCGCGTAACTTTTCTGGAGGTCAGTGTGACCCTTCCAGAGGCCTC
TGCTTGTGTTGAACAACGCGGAGTCTTGCTCGTGCACCTTGAGGAGTAGA
TGGTGGTCAAATCAGCTCCTCGATGTGTGTCCCTCCCTGGCACCGACTCA
CTAGGGTCCGTGGGGAACTAGCAAACCAACACTGGAGTGATTTTCACCGC
ACGTCCTCGCAGCAAGTCATCTTGTCAACGCGTGTTTTCACACGTGTTCG
TTCTTCCCTACAGTACTCCCTGAAGGAAATATTTCTTGATGAGCCGCTCA
ACGTGATCGCTGCTTGATCAGACGAAAGAAAACCGTCAAACCCACTCAAC
ACTGCTGAGCTGTGGTACTCGAGTAACCAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig939:238..5167-

>mRNA_Ecto-sp9_F_contig939.17545.1 ID=mRNA_Ecto-sp9_F_contig939.17545.1|Name=mRNA_Ecto-sp9_F_contig939.17545.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1194bp|location=Sequence derived from alignment at Ecto-sp9_F_contig939:238..5167- (Ectocarpus species9 EcSCA_722f female)
ATGTTCGAGGCACCCGTTACCGTGGATGGTCGCGGGCACCTTCTCGGGCG
CCTGGCGTCCGTCGTGGCGAAGGAGCTGCTTGGCGGCCAGAAGGTGGTCG
TCGTGCGGTGCGAGCAGATCACCATCAGCGGCTCTCATGTTCGAGGCACC
CGTTACCGTGGATGGTCGCGGGCACCTTCTCGGGCGCCTGGCGTCCGTCG
TGGCGAAGGAGCTGCTTGGCGGCCAGAAGGTGGTCGTCGTGCGGTGCGAG
CAGATCACCATCAGCGGCTCTCTGGTCCGTAACAAGGTGAAGTACATGCA
GTACAAGAAGAAGAGGCACAACACCAACCCCAAGCGCGGCCCGTACCACT
TCCGCTCGCCTGCCCGCATCTTCTGGCGGACGTGGTCCGTAACAAGGTGA
AGTACATGCAGTACAAGAAGAAGAGGCACAACACCAACCCCAAGCGCGGC
CCGTACCACTTCCGCTCGCCTGCCCGCATCTTCTGGCGGACGGTGAGGGG
AATGCTCCCCCGCAAGACCGCCAGGGGCGAGGAGGCGCTCGCACGCCTCT
CGGTGAGGGGAATGCTCCCCCGCAAGACCGCCAGGGGCGAGGAGGCGCTC
GCACGCCTCTCGTGCTTCGAGGGCATCCCGGCCCCCTACGACAAGAAGAA
GCGTATGGTCGTACCTAACGCCCTTCAGGTGATCAGGATGGCACCCGGCC
GCCGCTTCTGCGTGCTCGGACGCCTCTCCGAGGAGGTCGGATGGCCGCAC
GCAGAACTCATCAAGCGCCTCGAGTGCTTCGAGGGCATCCCGGCCCCCTA
CGACAAGAAGAAGCGTATGGTCGTACCTAACGCCCTTCAGGTGATCAGGA
TGGCACCCGGCCGCCGCTTCTGCGTGCTCGGACGCCTCTCCGAGGAGGTC
GGATGGCCGCACGCAGAACTCATCAAGCGCCTCGAGGCCCAGCGCAAGAT
CAAGTCGGAGGCGTACTACGTGGACAAGAAGGCGGCGAAGCAGCTCAAGG
ACAAGGCCACGGCAGAGGCCAACTTGGCTGCCGTTGCGCCCGTGCTCGAG
GAGTACGGCTTCTAAGCCCAGCGCAAGATCAAGTCGGAGGCGTACTACGT
GGACAAGAAGGCGGCGAAGCAGCTCAAGGACAAGGCCACGGCAGAGGCCA
ACTTGGCTGCCGTTGCGCCCGTGCTCGAGGAGTACGGCTTCTAA
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