mRNA_Ecto-sp9_F_contig9389.17544.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig9389.17544.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIM0_ECTSI) HSP 1 Score: 263 bits (673), Expect = 6.320e-80 Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 1
Query: 67 MRMAGLEVDKLYSLDRRHVLLKIRLPRIKLEEVAEVMRLKVRRRDGTIGRFKKDHRSSFSGGTSGDLFRSGESQKVIDHLIRAKIKDGGSELDDRTELGKHICKRMPLHNQARLQALYDSWVVYWRGPSQQQA 465
MRMAGLEVDKLYSLDRRHVLLKIRLPRIKLEEVAEVMRLKVRRRDGTIGRFKKDHRSSFSGGTSGDLFRSGESQKVIDHLIRAKIKDGGSELDDRTELGKHICKRMPLHNQARLQALYDSWVVYWRGPSQQQA
Sbjct: 1 MRMAGLEVDKLYSLDRRHVLLKIRLPRIKLEEVAEVMRLKVRRRDGTIGRFKKDHRSSFSGGTSGDLFRSGESQKVIDHLIRAKIKDGGSELDDRTELGKHICKRMPLHNQARLQALYDSWVVYWRGPSQQQA 133
BLAST of mRNA_Ecto-sp9_F_contig9389.17544.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RUE1_9ARCH) HSP 1 Score: 148 bits (373), Expect = 4.630e-38 Identity = 74/151 (49.01%), Postives = 105/151 (69.54%), Query Frame = 1
Query: 7 GAPPEF----FLGWTSPGTQIWSRMRMAGLEVDKLYSLDRRHVLLKIRLPRIKLEEVAEVMRLKVRRRDGTIGRFKKDHRSSFSG-GTSGDLFRSGESQKVIDHLIRAKIKDGGSELDDRTELGKHICKRMPLHNQARLQALYDSWVVYWR 444
GAPP FLGW S GTQIW+R+++AGL+V +YS D V+LK++ P +LE++AE MR+K++ R G + F+ R SF G G++FRS E Q+VID+++R+KI DGG+ELD+ TELGK I +R PLH +RLQ + WV +W+
Sbjct: 195 GAPPSLPIAQFLGWNSAGTQIWARLKLAGLDVKVVYSYDLYRVILKLKCPAWRLEQMAEQMRIKIKTRGGYMKPFRVSRRDSFIPYGAMGNIFRSSERQQVIDYILRSKICDGGAELDEHTELGKFIVQRFPLHMYSRLQEIRHGWVTFWK 345
BLAST of mRNA_Ecto-sp9_F_contig9389.17544.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HJC6_9STRA) HSP 1 Score: 145 bits (367), Expect = 2.290e-37 Identity = 77/166 (46.39%), Postives = 107/166 (64.46%), Query Frame = 1
Query: 13 PPEFFLGWTSPGTQIWSRMRMAGLEVDKLYSLDRRHVLLKIRLPRIKLEEVAEVMRLKVRRRDGTIGRFKKDHRSSF----------SGGTSGD------------LFRSGESQKVIDHLIRAKIKDGGSELDDRTELGKHICKRMPLHNQARLQALYDSWVVYWR 444
P ++FLG+ S GTQIWSR+R AGLE ++Y+LD R V++K+R P +L +VAEV+RLK++ RDGT F++ F S S D LFRS E Q +ID +IR++I+D G+EL +RTELGK + R+PLH ARL+ALY +WV++WR
Sbjct: 593 PSDYFLGFKSSGTQIWSRLRQAGLETQRIYALDSRRVMIKVRCPADRLMDVAEVLRLKLKTRDGTYTAFRESIMHQFLPTEDVGGISSSARSSDTSLLSASHYGARLFRSSERQTIIDFIIRSRIRDSGAELGERTELGKAVELRVPLHMHARLEALYGTWVLFWR 758
BLAST of mRNA_Ecto-sp9_F_contig9389.17544.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EGT0_9STRA) HSP 1 Score: 143 bits (361), Expect = 1.930e-36 Identity = 72/156 (46.15%), Postives = 106/156 (67.95%), Query Frame = 1
Query: 13 PPEFFLGWTSPGTQIWSRMRMAGLEVDKLYSLDRRHVLLKIRLPRIKLEEVAEVMRLKVRRRDGTIGRFKKDH------------RSSFSGGTSGDLFRSGESQKVIDHLIRAKIKDGGSELDDRTELGKHICKRMPLHNQARLQALYDSWVVYWR 444
P ++FLG+ S GTQIWSR+R AGLE ++Y+LD++ V++K+R P +L +VAEV+RLK++ RDG F++ R S+S + LFRS E Q +ID +IR++I+D G+EL T+LGK I R+PLH ARL++LY+ WV+YW+
Sbjct: 776 PSDYFLGFKSSGTQIWSRLRQAGLETTRIYALDKKRVMIKLRCPPERLMDVAEVLRLKLKTRDGVYAPFRESMISQYLPTNDGVPRESYSSNPA-SLFRSSERQAIIDFIIRSRIRDSGAELGQGTDLGKKIHLRVPLHMHARLESLYEGWVLYWK 930
BLAST of mRNA_Ecto-sp9_F_contig9389.17544.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TEN3_THAOC) HSP 1 Score: 139 bits (349), Expect = 7.940e-35 Identity = 71/158 (44.94%), Postives = 105/158 (66.46%), Query Frame = 1
Query: 10 APP-EFFLGWTSPGTQIWSRMRMAGLEVDKLYSLDRRHVLLKIRLPRIKLEEVAEVMRLKVRRRDGTIGRFKKDHRSSFSGGTSG------------DLFRSGESQKVIDHLIRAKIKDGGSELDDRTELGKHICKRMPLHNQARLQALYDSWVVYWR 444
APP ++FLG+ SPGTQIWSR+R AGLE ++Y+LD R V+LK+R P +LE+VAE ++LK++ + G F++D + F G LFRS E Q++I ++ +KI+D G+EL+ L K I KR+PLH+ ARL++LY SWV++W+
Sbjct: 697 APPSDYFLGYGSPGTQIWSRLRSAGLETQRVYALDTRRVMLKVRCPVDRLEDVAEALKLKLKTKSGDYVPFREDLITEFVPTDDGFVSCEDNVERVISLFRSSERQRIISFIMNSKIRDSGAELEPSERLSKSIQKRVPLHSHARLESLYSSWVLFWK 854
BLAST of mRNA_Ecto-sp9_F_contig9389.17544.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TPM3_9STRA) HSP 1 Score: 128 bits (322), Expect = 1.010e-34 Identity = 66/135 (48.89%), Postives = 96/135 (71.11%), Query Frame = 1
Query: 16 PEFFLGWTSPGTQIWSRMRMAGLEVDKLYSLDRRHVLLKIRLPRIKLEEVAEVMRLKVRRRDGTIGRF---KKDHRSSFSGGTSGDLFRSGESQKVIDHLIRAKIKDGGSELDDRTELGKHICKRMPLHNQARLQ 411
P FFLGWT+PGTQIW+R+RMAGL V +++ ++ + V+LKI +P+ +LE+VAE M +K+ ++ G RF KKD G S FRS + Q VID +IR++I+DGG+EL ++T LG+HI +R+PLH RL+
Sbjct: 28 PNFFLGWTAPGTQIWARLRMAGLIVKRIFDINTQVVILKITIPQTRLEQVAEAMHVKILKKGGGWDRFRVAKKDDFVQRPGSKS--CFRSSDRQLVIDFIIRSRIRDGGAELGEQTALGRHIARRLPLHMITRLE 160
BLAST of mRNA_Ecto-sp9_F_contig9389.17544.1 vs.
Match: Hypothetical (protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QEB7_9STRA) HSP 1 Score: 138 bits (348), Expect = 1.100e-34 Identity = 68/155 (43.87%), Postives = 104/155 (67.10%), Query Frame = 1
Query: 10 APP-EFFLGWTSPGTQIWSRMRMAGLEVDKLYSLDRRHVLLKIRLPRIKLEEVAEVMRLKVRRRDGTIGRFKKDHRSSFSGGTSGD---------LFRSGESQKVIDHLIRAKIKDGGSELDDRTELGKHICKRMPLHNQARLQALYDSWVVYWR 444
APP +FFLG+ SPGTQIW R+R AGLE D++Y+LD R V++K+R P +L +VAEV+RLK++ DG F++D +F + LFRS + Q+++D +I ++I+D G++L +LGK+I R P+H A+L+A+YD WV ++R
Sbjct: 1172 APPSDFFLGFRSPGTQIWGRLRQAGLETDRIYALDTRRVMIKVRCPADRLMDVAEVLRLKMKTNDGYYATFREDMIEAFQIADDSESCLSKQGSSLFRSSDRQRILDFIINSRIRDSGAQLSGHNDLGKNIMCRAPIHMHAKLEAIYDVWVHFYR 1326
BLAST of mRNA_Ecto-sp9_F_contig9389.17544.1 vs.
Match: Uncharacterized (protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BRZ9_THAPS) HSP 1 Score: 135 bits (339), Expect = 1.760e-33 Identity = 67/149 (44.97%), Postives = 104/149 (69.80%), Query Frame = 1
Query: 4 GGAPP-EFFLGWTSPGTQIWSRMRMAGLEVDKLYSLDRRHVLLKIRLPRIKLEEVAEVMRLKVRRRD--GTIGRFKKDHRSSFSGGTSGDLFRSGESQKVIDHLIRAKIKDGGSELDDRTELGKHICKRMPLHNQARLQALYDSWVVYW 441
G APP ++FLG++SPGTQIW R+R AGL+ ++Y+LD R V++K+R P +L++VAE ++LK++ +D G + D + + LFRS + QK+ID +I ++I+D G+EL T+LGK + +R+PLH+ ARL+ LY WV+YW
Sbjct: 706 GVAPPSDYFLGFSSPGTQIWGRLRQAGLDTQRVYALDTRKVMIKVRCPIDRLQDVAEALKLKLKTKDDDGFVSCDDYDEKVA-------SLFRSSDRQKIIDFIIGSRIRDSGAELGPSTQLGKQVQRRVPLHSHARLEILYSCWVLYW 847
BLAST of mRNA_Ecto-sp9_F_contig9389.17544.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JXK3_9STRA) HSP 1 Score: 131 bits (330), Expect = 2.570e-32 Identity = 66/161 (40.99%), Postives = 104/161 (64.60%), Query Frame = 1
Query: 13 PPEFFLGWTSPGTQIWSRMRMAGLEVDKLYSLDRRHVLLKIRLPRIKLEEVAEVMRLKVRRRDGTIGRFKKDHRSSF---------------SGGT--SGDLFRSGESQKVIDHLIRAKIKDGGSELDDRTELGKHICKRMPLHNQARLQALYDSWVVYWR 444
P ++FLG++S GT+IW+R+R AGLE ++Y LDR+ V+L +R P +L++VAEV+RLK+R +DG F++ H F SG T + LFRS + Q +I+ ++++K+ D G++L LGKHI +PLHN+ARL+ L+ +WV +W+
Sbjct: 516 PSDYFLGFSSAGTKIWARLRQAGLETQRVYGLDRKRVMLLVRCPEDRLQDVAEVIRLKLRTKDGLFLPFRETHSHIFLRNSETSENANPEQKSGNTGPNDSLFRSADRQFIINFILQSKLHDTGADLGPSNSLGKHITNHVPLHNRARLEDLFYAWVYFWK 676
BLAST of mRNA_Ecto-sp9_F_contig9389.17544.1 vs.
Match: Uncharacterized (protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KN45_FISSO) HSP 1 Score: 131 bits (329), Expect = 3.860e-32 Identity = 67/156 (42.95%), Postives = 100/156 (64.10%), Query Frame = 1
Query: 13 PPEFFLGWTSPGTQIWSRMRMAGLEVDKLYSLDRRHVLLKIRLPRIKLEEVAEVMRLKVRRRDGTIGRFKKD------------HRSSFSGGTSGDLFRSGESQKVIDHLIRAKIKDGGSELDDRTELGKHICKRMPLHNQARLQALYDSWVVYWR 444
P ++FLG+ SPGT IWSR+R AGLE ++Y+LDRR V++KIR P +L +VAEV+RLK++ RDG+ F++D + S S G F S Q +ID ++ ++I+D G+EL T+LGK I R+PLH +L A+++SW +W+
Sbjct: 870 PSDYFLGFRSPGTSIWSRLRQAGLETQRVYALDRRSVMIKIRCPNDRLMDVAEVLRLKLKTRDGSFAPFREDMIEFYHDLNDPLEKLSGSCDPDGFQFPSAFRQTIIDFIVGSRIRDTGAELGQNTDLGKLIQARVPLHMPEKLDAIFNSWFYFWK 1025 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9389.17544.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig9389.17544.1 >prot_Ecto-sp9_F_contig9389.17544.1 ID=prot_Ecto-sp9_F_contig9389.17544.1|Name=mRNA_Ecto-sp9_F_contig9389.17544.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=173bp MGGAPPEFFLGWTSPGTQIWSRMRMAGLEVDKLYSLDRRHVLLKIRLPRIback to top mRNA from alignment at Ecto-sp9_F_contig9389:3006..5235- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig9389.17544.1 ID=mRNA_Ecto-sp9_F_contig9389.17544.1|Name=mRNA_Ecto-sp9_F_contig9389.17544.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2230bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9389:3006..5235- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9389:3006..5235- >mRNA_Ecto-sp9_F_contig9389.17544.1 ID=mRNA_Ecto-sp9_F_contig9389.17544.1|Name=mRNA_Ecto-sp9_F_contig9389.17544.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1038bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9389:3006..5235- (Ectocarpus species9 EcSCA_722f female)back to top |