mRNA_Ecto-sp9_F_contig9383.17541.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9383.17541.1
Unique NamemRNA_Ecto-sp9_F_contig9383.17541.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9383.17541.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9383contigEcto-sp9_F_contig9383:380..1231 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-17_001770.1
Exons1
Model size852
Cds size246
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931018.805803-UTR-Ecto-sp9_F_contig9383:379..9851622931018.805803-UTR-Ecto-sp9_F_contig9383:379..985Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9383 380..985 +
1692278995.2849412-UTR-Ecto-sp9_F_contig9383:379..9851692278995.2849412-UTR-Ecto-sp9_F_contig9383:379..985Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9383 380..985 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931018.8240898-CDS-Ecto-sp9_F_contig9383:985..12311622931018.8240898-CDS-Ecto-sp9_F_contig9383:985..1231Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9383 986..1231 +
1692278995.293943-CDS-Ecto-sp9_F_contig9383:985..12311692278995.293943-CDS-Ecto-sp9_F_contig9383:985..1231Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9383 986..1231 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9383.17541.1prot_Ecto-sp9_F_contig9383.17541.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9383 986..1231 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9383.17541.1

>prot_Ecto-sp9_F_contig9383.17541.1 ID=prot_Ecto-sp9_F_contig9383.17541.1|Name=mRNA_Ecto-sp9_F_contig9383.17541.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=82bp
MSRNTFSPSCSPQRQSSPPTRSFDASSPLPPPASPTPGSVVSQSSILHFG
CPVSHVVIPHQLSMATVLRILYITDQLICGC*
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mRNA from alignment at Ecto-sp9_F_contig9383:380..1231+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9383.17541.1 ID=mRNA_Ecto-sp9_F_contig9383.17541.1|Name=mRNA_Ecto-sp9_F_contig9383.17541.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=852bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9383:380..1231+ (Ectocarpus species9 EcSCA_722f female)
GTCGTCGTGTTCTTCACAAAACCCGTTCCGGTTTCTGCCCAGTACCGGTC
CAGCTGACGCGGACGCCTTCCATGGTCACAGGCCAACTACAAAAAAAAGG
GTACGCATTCACTTGAATATATTAAGAATCAAACGGAAATACAAATAAAT
AAATGGACTTTGATGGACTCCGAAAAAACTCAAACACGATGCAGATCAAA
ATGACACGATGGCAACCGGAAAGGCGAACCGCGAATAAGAAAAATAGAAC
GAATGGCCTCATCCAATCATAAAGAATGAGAGCCCGTCGCTCATGCTCAT
TAAACCACAAGTTCACGAGTGAAACATCACATAAATCGCCTGATTCCCCC
TCCTAGGGCGGGTTGTGTTAACCGCCGGGGTTACACCGGCCAAGCCGTTC
CCCACACGTACATGCAAAAAAAAACGTGGGTAGTTCTAAGATCACTCCAC
GCCGGGACAACCAAAATTTAGACAACACAATCATTAGAAGGATTAACGAC
ATTACACCTCGGGGGTAATGAGCGGGCGGGGGGCATAGCGAAGAAGCACA
AGCGAGAGGTCTTTGACTATTATTCCAGTCCGCCTCCATCATATTCAGTC
CGGTACATGTCTCGCAACACATTCTCTCCGTCCTGCTCTCCGCAACGACA
GTCGTCTCCTCCAACGAGGTCCTTCGACGCTTCTTCCCCCTTGCCCCCGC
CCGCATCCCCCACCCCCGGCTCGGTGGTCTCTCAGTCTTCTATCCTACAC
TTTGGCTGTCCCGTATCGCATGTTGTTATTCCTCATCAACTCAGCATGGC
AACCGTCCTACGGATCTTGTACATCACAGACCAGCTCATATGTGGATGCT
GA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9383:380..1231+

>mRNA_Ecto-sp9_F_contig9383.17541.1 ID=mRNA_Ecto-sp9_F_contig9383.17541.1|Name=mRNA_Ecto-sp9_F_contig9383.17541.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=492bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9383:380..1231+ (Ectocarpus species9 EcSCA_722f female)
ATGTCTCGCAACACATTCTCTCCGTCCTGCTCTCCGCAACGACAGTCGTC
TCCTCCAACGAGGTCCTTCGACGCTTCTTCCCCCTTGCCCCCGCCCGCAT
CCCCCACCCCCGGCTCGGTGGTCTCTCAGTCTTCTATCCTACACTTTGGC
TGTCCCGTATCGCATGTTGTTATTCCTCATCAACTCAGCATGGCAACCGT
CCTACGGATCTTGTACATCACAGACCAGCTCATATGTGGATGCTGAATGT
CTCGCAACACATTCTCTCCGTCCTGCTCTCCGCAACGACAGTCGTCTCCT
CCAACGAGGTCCTTCGACGCTTCTTCCCCCTTGCCCCCGCCCGCATCCCC
CACCCCCGGCTCGGTGGTCTCTCAGTCTTCTATCCTACACTTTGGCTGTC
CCGTATCGCATGTTGTTATTCCTCATCAACTCAGCATGGCAACCGTCCTA
CGGATCTTGTACATCACAGACCAGCTCATATGTGGATGCTGA
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