mRNA_Ecto-sp9_F_contig937.17530.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp9_F_contig937.17530.1
Unique Name	mRNA_Ecto-sp9_F_contig937.17530.1
Type	mRNA
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)

Homology

[Close]

BLAST of mRNA_Ecto-sp9_F_contig937.17530.1 vs.
Match: Protein (kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2N4_9PHAE)

HSP 1 Score: 374 bits (960), Expect = 3.450e-124
Identity = 187/196 (95.41%), Postives = 189/196 (96.43%), Query Frame = 1

Query:  352 MQHLLAFNENVTLAELNEVEPFSQGGFCVICSCVYRGQQAVLKIPKPATTSSRSGGAAQDLLTEISIYRQISQRGGHPNIARAFGAGTHVQQGETSPSPFLLLERLEGGTLENAFERSTAVWSDPIGRLPVAIELAEAVAFLHEAAIPGGVVLHRDLKPSNIGLCGAGHIKVFDLGLSVVRQVLEAPTRVVGHGGF 939
            MQHLLAFNENVTLAELNEVEPFSQGGFCVICSC+YRGQQAVLKIPKPATTSSRSGGAAQDLL EISIYRQIS RGGHPNIARAFGAGTHVQQGETSPSPFLLLERL+GGTLENAFERSTAVWSDPIGRLPVAIELAEAVAFLHEAAIPGGVVLHRDLKPSNIGLCGAGHIKVFDLGLSVVRQVLEAPTRV    G 
Sbjct:    1 MQHLLAFNENVTLAELNEVEPFSQGGFCVICSCIYRGQQAVLKIPKPATTSSRSGGAAQDLLREISIYRQISLRGGHPNIARAFGAGTHVQQGETSPSPFLLLERLQGGTLENAFERSTAVWSDPIGRLPVAIELAEAVAFLHEAAIPGGVVLHRDLKPSNIGLCGAGHIKVFDLGLSVVRQVLEAPTRVYEMSGM 196

[Close]

BLAST of mRNA_Ecto-sp9_F_contig937.17530.1 vs.
Match: Protein (kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JMU8_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 1.330e-53
Identity = 103/187 (55.08%), Postives = 131/187 (70.05%), Query Frame = 1

Query:  370 FNENVTLAELNEVEPFSQGGFCVICSCVYRG-QQAVLKIPKPATTSSRSGGAAQDLLTEISIYRQISQRGGHPNIARAFGAGTHVQQGETSPSPFLLLERLEGGTLENAFERSTAV---------WSDPIGRLPVAIELAEAVAFLHEAAIPGGVVLHRDLKPSNIGLCGAGHIKVFDLGLSVVRQV 900
            F +N++L  L +++P   GGFC++CSC Y G Q+AVLKIPKP   +S    AA DLL EI+IY++IS RGGHPNIA A GAG    +GE    PFL+LERLEGG+L  A E S  +         W D + RLPVA+ELA+A+ +LH  A+PG  +LHRDLKP+NIGLC  GH+KVFD GLSVV++V
Sbjct:   47 FQDNLSLDALTDIQPLDHGGFCIVCSCTYNGVQRAVLKIPKPQGPNS----AAADLLAEIAIYKRISARGGHPNIAAALGAG-FTSRGE----PFLVLERLEGGSLAGAIESSRTLGGDAADGGAWVDLVTRLPVALELADALQYLHRDALPG-FILHRDLKPTNIGLCAEGHVKVFDFGLSVVQEV 223

[Close]

BLAST of mRNA_Ecto-sp9_F_contig937.17530.1 vs.
Match: Protein (kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K4Q0_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 1.350e-28
Identity = 54/101 (53.47%), Postives = 73/101 (72.28%), Query Frame = 2

Query:  923 SGMAGSKRFMAPEVCTGLSYNEKVDVYSFALVLWQICALRKPFAGMSEADHYLQVVQGGLRPPLDARWPPQLVHLLQACWHVHPDARPTMVQVRDTLRQIF 1225
            +G  GS+RFMAPEV  G+ YNEK D+YS+ +VLW++CAL+KPFAGMS  +H  +V + G+RPPLD RWP +L  LL++CWH   + RP   Q  +TL +I 
Sbjct:  264 TGQTGSQRFMAPEVFDGMPYNEKADIYSYGIVLWELCALQKPFAGMSSHEHARKVFRHGVRPPLDKRWPDELKSLLRSCWHAEAEERPDAAQAVETLARII 364

[Close]

BLAST of mRNA_Ecto-sp9_F_contig937.17530.1 vs.
Match: Kinase-like (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE86_9STRA)

HSP 1 Score: 117 bits (292), Expect = 3.710e-24
Identity = 55/116 (47.41%), Postives = 71/116 (61.21%), Query Frame = 2

Query:  896 RCLKRPP------EWSGMAGSKRFMAPEVCTGLSYNEKVDVYSFALVLWQICALRKPFAGMSEADHYLQVVQGGLRPPLDARWPPQLVHLLQACWHVHPDARPTMVQVRDTLRQIF 1225
            RC+KR        + +G  GS R+MAPEV   L YNEKVDVY+F L+LW++   R+ F GMS  D Y +VV GG+RPPLD+ WPP L  L+  CWH   D RP    +   L+ I+
Sbjct:  312 RCVKRRARVNARYDMTGETGSMRYMAPEVVESLPYNEKVDVYAFGLLLWEMLQYRRVFEGMSVGDFYQRVVNGGIRPPLDSSWPPALRKLIDLCWHADVDKRPDFHYIAAQLKDIY 427

[Close]

BLAST of mRNA_Ecto-sp9_F_contig937.17530.1 vs.
Match: Hypothetical (protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZVA0_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.790e-23
Identity = 46/107 (42.99%), Postives = 71/107 (66.36%), Query Frame = 2

Query:  923 SGMAGSKRFMAPEVCTGLSYNEKVDVYSFALVLWQICALRKPFAGMSEADHYLQVVQGGLRPPLDARWPPQLVHLLQACWHVHPDARPTMVQVRDTLRQIFAMGGGG 1243
            SG  GS R+MAPEV   L YN+K DVYSF ++LW++ A +KP+ GM++ + Y++VV+G  RPP++ +WP +LV L+Q CW      RP+  ++ + L  + +   GG
Sbjct:  105 SGQTGSLRYMAPEVAKSLPYNQKADVYSFGIILWELNAYKKPYEGMNKDEFYMRVVEGKERPPINKKWPEELVQLMQECWSFDARLRPSFHEIVERLDAMLSKEKGG 211

[Close]

BLAST of mRNA_Ecto-sp9_F_contig937.17530.1 vs.
Match: Hypothetical (protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A6U1Q6S1_CYCTE)

HSP 1 Score: 104 bits (260), Expect = 1.100e-22
Identity = 45/99 (45.45%), Postives = 68/99 (68.69%), Query Frame = 2

Query:  932 AGSKRFMAPEVCTGLSYNEKVDVYSFALVLWQICALRKPFAGMSEADHYLQVVQGGLRPPLDARWPPQLVHLLQACWHVHPDARPTMVQVRDTLRQIFA 1228
            +GS+R+MAPEV   + Y++ VDV+SFA++LW++CAL +PF  +S   HY +V+QG +RP L+A WP +L  LL+ CW  +   RP   Q+ D+L  I +
Sbjct:   62 SGSRRYMAPEVARRVEYDKSVDVFSFAILLWEVCALERPFEQLSREQHYYKVIQGTMRPKLEAWWPRELQTLLRQCWSRNAWERPCFPQIVDSLEGIMS 160

[Close]

BLAST of mRNA_Ecto-sp9_F_contig937.17530.1 vs.
Match: Kinase-like (domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9R1_9STRA)

HSP 1 Score: 101 bits (252), Expect = 3.670e-22
Identity = 46/99 (46.46%), Postives = 63/99 (63.64%), Query Frame = 2

Query:  935 GSKRFMAPEVCTGLSYNEKVDVYSFALVLWQICALRKPFAGMSEADHYLQVVQGGLRPPLDARWPPQLVHLLQACWHVHPDARPTMVQVRDTLRQIFAM 1231
            G+ R+MAPEV  G  YNE+VDVYSF L+LW++ A ++ F G+     Y  V+  GLRP ++A W P L  L+++CW  +PDARP +  V   LR I A 
Sbjct:    1 GTVRYMAPEVVRGQPYNERVDVYSFGLLLWEMLAYQRVFEGIPLRQFYKSVITDGLRPEMEAHWSPALARLMKSCWAPNPDARPDIEAVAAALRVILAQ 99

[Close]

BLAST of mRNA_Ecto-sp9_F_contig937.17530.1 vs.
Match: Hypothetical (protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A6V4M4K7_9EUKA)

HSP 1 Score: 102 bits (255), Expect = 5.100e-22
Identity = 48/109 (44.04%), Postives = 64/109 (58.72%), Query Frame = 2

Query:  917 EWSGMAGSKRFMAPEVCTGLSYNEKVDVYSFALVLWQICALRKPFAGMSEADHYLQVVQGGLRPPLDARWPPQLVHLLQACWHVHPDARPTMVQVRDTLRQIFAMGGGG 1243
            E +G  GS R+MAPEV   L YNEK DV+SFA++L+Q+ +  KPF+GM     Y  V+ GG RP +  +WP  +  LL+ CWH  PD RP    V   + +  A  G G
Sbjct:   54 EMTGKTGSARYMAPEVALSLPYNEKADVHSFAMILYQLLSHEKPFSGMDLEMLYTDVIYGGQRPKVPRQWPASMRDLLRDCWHPDPDCRPPFCAVLRRIERALAESGEG 162

[Close]

BLAST of mRNA_Ecto-sp9_F_contig937.17530.1 vs.
Match: Hypothetical (protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2E7Y8_TRICV)

HSP 1 Score: 105 bits (263), Expect = 1.800e-21
Identity = 50/106 (47.17%), Postives = 66/106 (62.26%), Query Frame = 2

Query:  923 SGMAGSKRFMAPEVCTGLSYNEKVDVYSFALVLWQICALRKPFAGMSEADHYLQVVQGGLRPPLDA-----RWPPQLVHLLQACWHVHPDARPTMVQVRDTLRQIF 1225
            +G  GS+R+MAPEV  G SY  +VD YSF ++LW+ICAL KPF G SEA H   VV+GG RPP+DA      WP ++  L+  CW+ HP  RP    + + L+   
Sbjct:  202 TGNTGSRRYMAPEVAMGHSYGFEVDSYSFGILLWEICALEKPFLGFSEARHAELVVEGGHRPPIDAGGQHSHWPERVRDLMVMCWNEHPYTRPNFTFISNELQTFL 307

[Close]

BLAST of mRNA_Ecto-sp9_F_contig937.17530.1 vs.
Match: Hypothetical (protein n=6 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2JN82_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.870e-21
Identity = 46/107 (42.99%), Postives = 71/107 (66.36%), Query Frame = 2

Query:  923 SGMAGSKRFMAPEVCTGLSYNEKVDVYSFALVLWQICALRKPFAGMSEADHYLQVVQGGLRPPLDARWPPQLVHLLQACWHVHPDARPTMVQVRDTLRQIFAMGGGG 1243
            SG  GS R+MAPEV   L YN+K DVYSF ++LW++ A +KP+ GM++ + Y++VV+G  RPP++ +WP +LV L+Q CW      RP+  ++ + L  + +   GG
Sbjct:  547 SGQTGSLRYMAPEVAKSLPYNQKADVYSFGIILWELNAYKKPYEGMNKDEFYMRVVEGKERPPINKKWPEELVQLMQECWSFDARLRPSFHEIVERLDAMLSKEKGG 653

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig937.17530.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig937.17530.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Protein	3.450e-124	95.41	kinase domain-containing protein n=2 Tax=Ectocarpu...	[more]
Protein	1.330e-53	55.08	kinase domain-containing protein n=2 Tax=Ectocarpu...	[more]
Protein	1.350e-28	53.47	kinase domain-containing protein n=2 Tax=Ectocarpu...	[more]
Kinase-like	3.710e-24	47.41	domain-containing protein n=1 Tax=Tribonema minus ...	[more]
Hypothetical	1.790e-23	42.99	protein n=1 Tax=Ditylum brightwellii TaxID=49249 R...	[more]
Hypothetical	1.100e-22	45.45	protein n=1 Tax=Cyclophora tenuis TaxID=216820 Rep...	[more]
Kinase-like	3.670e-22	46.46	domain-containing protein (Fragment) n=1 Tax=Tribo...	[more]
Hypothetical	5.100e-22	44.04	protein n=1 Tax=Prymnesium polylepis TaxID=72548 R...	[more]
Hypothetical	1.800e-21	47.17	protein n=1 Tax=Trieres chinensis TaxID=1514140 Re...	[more]
Hypothetical	1.870e-21	42.99	protein n=6 Tax=Ditylum brightwellii TaxID=49249 R...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig937	contig	Ecto-sp9_F_contig937:554..3900 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	197.2
Seed ortholog evalue	1.3e-47
Seed eggNOG ortholog	2880.D7FPX1
KEGG ko	ko:K14304
KEGG TC	1.I.1
KEGG Pathway	ko03013,map03013
KEGG Module	M00427
GOs	GO:0000323,GO:0000902,GO:0000904,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005794,GO:0005795,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006897,GO:0006914,GO:0006928,GO:0006935,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0007528,GO:0008088,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009267,GO:0009605,GO:0009653,GO:0009894,GO:0009987,GO:0009991,GO:0010008,GO:0010506,GO:0010721,GO:0010769,GO:0010771,GO:0010941,GO:0010970,GO:0010975,GO:0010977,GO:0012505,GO:0016020,GO:0016043,GO:0016049,GO:0016192,GO:0016197,GO:0016241,GO:0016301,GO:0016310,GO:0016482,GO:0016740,GO:0016772,GO:0016773,GO:0017016,GO:0017137,GO:0018105,GO:0018193,GO:0018209,GO:0019222,GO:0019538,GO:0019899,GO:0022008,GO:0022603,GO:0022604,GO:0023052,GO:0030030,GO:0030100,GO:0030154,GO:0030182,GO:0030424,GO:0030425,GO:0030705,GO:0031090,GO:0031175,GO:0031267,GO:0031323,GO:0031329,GO:0031344,GO:0031345,GO:0031410,GO:0031594,GO:0031667,GO:0031668,GO:0031669,GO:0031902,GO:0031982,GO:0031984,GO:0032418,GO:0032501,GO:0032502,GO:0032879,GO:0032886,GO:0032989,GO:0032990,GO:0033036,GO:0033043,GO:0033267,GO:0033554,GO:0034613,GO:0034976,GO:0035556,GO:0036211,GO:0036465,GO:0036477,GO:0040007,GO:0040011,GO:0042147,GO:0042221,GO:0042330,GO:0042594,GO:0042995,GO:0043005,GO:0043025,GO:0043170,GO:0043195,GO:0043198,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043679,GO:0044087,GO:0044088,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044267,GO:0044297,GO:0044306,GO:0044422,GO:0044424,GO:0044431,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044456,GO:0044463,GO:0044464,GO:0045202,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0046907,GO:0048311,GO:0048312,GO:0048468,GO:0048488,GO:0048489,GO:0048519,GO:0048523,GO:0048588,GO:0048589,GO:0048666,GO:0048667,GO:0048675,GO:0048699,GO:0048731,GO:0048812,GO:0048814,GO:0048846,GO:0048856,GO:0048858,GO:0048869,GO:0050767,GO:0050768,GO:0050773,GO:0050774,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0050808,GO:0050896,GO:0051020,GO:0051049,GO:0051093,GO:0051128,GO:0051129,GO:0051179,GO:0051234,GO:0051239,GO:0051241,GO:0051493,GO:0051640,GO:0051641,GO:0051645,GO:0051646,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051683,GO:0051716,GO:0051960,GO:0051961,GO:0060284,GO:0060341,GO:0060548,GO:0060560,GO:0060627,GO:0061174,GO:0061564,GO:0061845,GO:0061919,GO:0065007,GO:0065008,GO:0070507,GO:0070727,GO:0071212,GO:0071496,GO:0071704,GO:0071840,GO:0090128,GO:0097447,GO:0097458,GO:0097479,GO:0097480,GO:0097485,GO:0097708,GO:0098588,GO:0098657,GO:0098693,GO:0098791,GO:0098793,GO:0098805,GO:0098852,GO:0099003,GO:0099111,GO:0099174,GO:0099504,GO:0120025,GO:0120035,GO:0120036,GO:0120038,GO:0120039,GO:0140096,GO:0150034,GO:1900242,GO:1901214,GO:1901215,GO:1901564,GO:1902115,GO:1902284,GO:1903421,GO:1990033,GO:1990138,GO:2000026,GO:2000171,GO:2000331,GO:2000785
EggNOG free text desc.	protein kinase activity
EggNOG OGs	COG0515@1,KOG0192@2759
COG Functional cat.	KLT
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko03019,ko03036
Hectar predicted targeting category	other localisation
Ec32 ortholog description	Serine/threonine-protein kinase CTR1
Ec32 ortholog	Ec-01_003940.1
Exons	3
Model size	1529
Cds size	1068
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig937.17530.1	prot_Ecto-sp9_F_contig937.17530.1	Ectocarpus species9 EcSCA_722f female	polypeptide	Ecto-sp9_F_contig937 664..3549 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931017.1130364-UTR-Ecto-sp9_F_contig937:553..663	1622931017.1130364-UTR-Ecto-sp9_F_contig937:553..663	Ectocarpus species9 EcSCA_722f female	UTR	Ecto-sp9_F_contig937 554..663 -
1692278994.4937537-UTR-Ecto-sp9_F_contig937:553..663	1692278994.4937537-UTR-Ecto-sp9_F_contig937:553..663	Ectocarpus species9 EcSCA_722f female	UTR	Ecto-sp9_F_contig937 554..663 -
1622931017.2086692-UTR-Ecto-sp9_F_contig937:3549..3900	1622931017.2086692-UTR-Ecto-sp9_F_contig937:3549..3900	Ectocarpus species9 EcSCA_722f female	UTR	Ecto-sp9_F_contig937 3550..3900 -
1692278994.545827-UTR-Ecto-sp9_F_contig937:3549..3900	1692278994.545827-UTR-Ecto-sp9_F_contig937:3549..3900	Ectocarpus species9 EcSCA_722f female	UTR	Ecto-sp9_F_contig937 3550..3900 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931017.1368763-CDS-Ecto-sp9_F_contig937:663..1161	1622931017.1368763-CDS-Ecto-sp9_F_contig937:663..1161	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig937 664..1161 -
1692278994.5089803-CDS-Ecto-sp9_F_contig937:663..1161	1692278994.5089803-CDS-Ecto-sp9_F_contig937:663..1161	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig937 664..1161 -
1622931017.1547809-CDS-Ecto-sp9_F_contig937:1883..1989	1622931017.1547809-CDS-Ecto-sp9_F_contig937:1883..1989	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig937 1884..1989 -
1692278994.518258-CDS-Ecto-sp9_F_contig937:1883..1989	1692278994.518258-CDS-Ecto-sp9_F_contig937:1883..1989	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig937 1884..1989 -
1622931017.17314-CDS-Ecto-sp9_F_contig937:3085..3549	1622931017.17314-CDS-Ecto-sp9_F_contig937:3085..3549	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig937 3086..3549 -
1692278994.528142-CDS-Ecto-sp9_F_contig937:3085..3549	1692278994.528142-CDS-Ecto-sp9_F_contig937:3085..3549	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig937 3086..3549 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp9_F_contig937:554..3900-
coding sequence from alignment at Ecto-sp9_F_contig937:554..3900-

protein sequence of mRNA_Ecto-sp9_F_contig937.17530.1

>prot_Ecto-sp9_F_contig937.17530.1 ID=prot_Ecto-sp9_F_contig937.17530.1|Name=mRNA_Ecto-sp9_F_contig937.17530.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=356bp
MQHLLAFNENVTLAELNEVEPFSQGGFCVICSCVYRGQQAVLKIPKPATT
SSRSGGAAQDLLTEISIYRQISQRGGHPNIARAFGAGTHVQQGETSPSPF
LLLERLEGGTLENAFERSTAVWSDPIGRLPVAIELAEAVAFLHEAAIPGG
VVLHRDLKPSNIGLCGAGHIKVFDLGLSVVRQVLEAPTRVVGHGGFQEVH
GPRGLHRAVVQREGGRVLVRPRAVADLRPAQALRGHERGRPLPPGRAGGP
KAPPRRAVAAAARAPAAGVLARTPGRKADHGPGPRHLAADLRDGRWRGRA
ALLRKGGGGGWMAAFFVPGGNGLVFRHVDLVRRDFTTSSHHSSPILLGYL
SLVHI*

mRNA from alignment at Ecto-sp9_F_contig937:554..3900-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp9_F_contig937.17530.1 ID=mRNA_Ecto-sp9_F_contig937.17530.1|Name=mRNA_Ecto-sp9_F_contig937.17530.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3347bp|location=Sequence derived from alignment at Ecto-sp9_F_contig937:554..3900- (Ectocarpus species9 EcSCA_722f female)
GCACCAACAGCAGTCTGCACAACCAAACCAGCACCAACAAGCACCACCGC
CCCCGACACCAACACCGCACGACCTTCTTCATCCATATCGTCGAGTGCGA
CAACCGCAACGGCCGGGCTGCTGCTGTATCCTCTCTCGTTTAGCAACAGC
AACAGCAACTCCTAGCCGCTCCGCACACTACTGGCTACCAGTTGCGGTGT
TGCGGTCCGCCACGGGAAAAAAACTGCTGGATACGTATCTATCGGCCTTT
TTCCTCCTCTCCGAGATAAAAAACGGCTGTTCAGTCTACTGGCATCGGCT
GCCGCCGCCTGCCGGAGAAAAGCAAGACAGACCGCCCACACCACCACCAC
CATGCAGCACCTGTTGGCGTTCAACGAGAACGTGACCCTCGCCGAGCTCA
ACGAGGTCGAGCCGTTCTCCCAGGGAGGCTTCTGCGTGATCTGCTCCTGT
GTCTACCGCGGGCAGCAGGCCGTGCTCAAGATCCCCAAGCCGGCGACGAC
CTCCAGCCGCAGCGGCGGCGCCGCGCAGGACCTCCTCACGGAGATCTCCA
TCTACCGGCAGATCTCCCAGCGAGGCGGACACCCCAACATCGCCCGCGCC
TTCGGCGCCGGCACCCACGTCCAGCAGGGAGAGACGTCCCCGTCGCCGTT
CCTCCTGCTGGAGAGGCTCGAGGGAGGCACGCTGGAGAACGCCTTCGAGC
GGAGCACCGCGGTCTGGAGCGACCCGATCGGCAGGCTGCCCGTGGCCATC
GAGCTGGCGGAGGCGGTTGCGTTTCTGCACGAGGCGGCTATCCCAGGCGG
GGTCGTCCTGCACAGGTGAGCCAGCCTGTCGTCTTTGTCTTGTCAGCTGC
AGCCCCAGGAGCAGTTGCAGTCTCTGTCTGTGGTGAACTGCTGTCAGTAT
ATATCTGCTGTTGGTCAATGGCGTGTAGGTGTCGAGCGAATGTTGGTGTT
GCCGCGCACTCTGCCAGCCACTGGAAGACTCCCTCGCACCCATTCGAGAT
GCTACCCCCCGTCTCGTCGTGAGTGCTTAACGTGCGTGGTGTTCTGCTAT
TTGTGTGCATGCAACTGGTGCGGAGTTTCTTCTGTGTTGTGTGGTTTCTT
GTCCGTTACGCAACGTGATGTTTAAATTTGATCTGCAGCAGCAAGAAATC
CATGTACGTACGTCTATGGTCGCGTTTTTTGTGCTGCCGATTGGCGTTTC
TCTCTCTCTCCAGTTGGTGATGCGGATCACTGAGCCAGGTGCTAGCAGTA
GCAAGCCACGCCGTTATTACCGTAGACGTGTTTCTCAAGAAGTGCATACC
AATGAGGAGCGTTGGCCCGACAGAGTGCAAAGGGTGCATTTGGCAAAGAA
CCCACGCAGCAATGAAACATAGGCGGCAGGACCTACATTTTCAAATTTGG
TTTCGAGCAAAATGGTTGATGCTACCCGGCTCTCTTCTTGTGAACGGAAT
GGTTGATGCTACCCGGCTCTCTTCTTGTGAACGGCAGACCCTATTGATAG
TGCTGTTTGTCTGGACTTGGCATGGGTGGTGTGCCTTCTTCCCGACCTGG
TTCTATTCTTTTATTTTTGAAAAAATTCTTTCCGATCTGGGAATGTTCTT
TGTGGACTCATGGTGGTGCCATTGCGCTTGGAATGTTTGGACCTCTTCCA
ATGGTCTACAAAACGGTACATATCTCTCTACACGATGGTAGCCAGCAATA
GCAGCCATTGTTTATGTGTACAACTGCAGCAACGGCCTCACCGCAAAACT
ATGCCACAAGAATAGAGGTATTGATTTCTCTTTGACGACTGAAGCAGGCG
GGTGCCGCACACAGCAATGCTGTTGTCCGGTTGTCTTTTCCCCCGATTCT
TCGTCCCGACTGACAACTCGATGCTACACCGATGGGTTTACCGCTGTTTG
TACCCAAGCAGGGACCTGAAGCCATCGAATATCGGGCTCTGCGGAGCGGG
ACACATCAAGGTGTTCGATTTGGGGCTTTCGGTCGTGAGGCAGGTGCTTG
AAGCGCCCACCAGAGTGTATGAGGTGAGGATGGAGGGAGGGGGGAGGCGG
GGAGCGGGGGGCGGGAAATACAGCAGTACGGTCGATTGGGATGACTGCCT
GCAGCGCACGTCTGCATGTGTTCTGATGTGTGACGGTGTTTGGTTTGATT
GTTGACCACAATAGTTTGGGTGTTGGATTCAGCGTGGAGCTGATGCCCGC
CCCTGGTTGGTAAATAGACATGTGACGTGCTGAGTTGTGAGATCGGAACT
GCTGGTTTCGGTCCACCAAGCATGTGTTGGGTTGTATTGTCATTCATATC
GAGGGGCAGAACTAGACCGGATGGATGTTGGCAGGGAGAACGAGGAAAGT
TGTGTTCTTCATGTGTTGGCCCGGTTGGTTTGAGTTGTTGACGACTGACC
GTCGCATCAACGCATCTGCTAGCTGTTAAATGGCTTTTGTCGCCTGCCGC
GACTGTGTCGACATGTCTGTAAGGCGACGGCTGTCCCTTGTCTAGTTTTG
CCTGCCTCTCATTTTTCCATGTTCCTGACGCTCTCTCTCTCTCTCTCTCT
CTGCTTGCTTCTGCTTGTATTTTTTTTTGTTTCTGGGGTGGCTCAACCTG
TCTCTCTTCACCAACCACGCCCGTCACCACGCACCACACCACCCTTTCCA
CGATAACGCGGGACGCGGGTCACCACACCACCCTTCCACGATACCGCGGG
ACATGACGCCACCCTTCCACATATTATCGCGGGACAGATGTCGGGCATGG
CGGGTTCCAAGAGGTTCATGGCCCCCGAGGTCTGCACCGGGCTGTCGTAC
AACGAGAAGGTGGACGTGTACTCGTTCGCCCTCGTGCTGTGGCAGATCTG
CGCCCTGCGCAAGCCCTTCGCGGGCATGAGCGAGGCCGACCACTACCTCC
AGGTCGTGCAGGGGGGCCTAAGGCCCCCCCTCGACGCGCGGTGGCCGCCG
CAGCTCGTGCACCTGCTGCAGGCGTGCTGGCACGTACACCCGGACGCAAG
GCCGACCATGGTCCAGGTCCGCGACACCTTGCGGCAGATCTTCGCGATGG
GCGGTGGAGGGGGCGCGCCGCCCTACTAAGGAAAGGAGGAGGAGGAGGCT
GGATGGCTGCTTTTTTTGTACCGGGCGGAAATGGGCTAGTTTTTAGGCAT
GTGGACTTGGTCCGCAGAGACTTCACTACGTCCTCTCATCACTCATCTCC
GATTTTGCTGGGGTATCTGTCGTTGGTGCATATATGAGTGAGTGTGCATG
CTATCGGAGGCAGCAGTCGCGCAACCGTGTGAGTCTTTTTGGTGGTGTGT
GTTTTTTTTTTTTTTTGGGGGGTTTTTTTTTTTTTTTTTGTTTGGGG

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig937:554..3900-

>mRNA_Ecto-sp9_F_contig937.17530.1 ID=mRNA_Ecto-sp9_F_contig937.17530.1|Name=mRNA_Ecto-sp9_F_contig937.17530.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2136bp|location=Sequence derived from alignment at Ecto-sp9_F_contig937:554..3900- (Ectocarpus species9 EcSCA_722f female)
ATGCAGCACCTGTTGGCGTTCAACGAGAACGTGACCCTCGCCGAGCTCAA
CGAGGTCGAGCCGTTCTCCCAGGGAGGCTTCTGCGTGATCTGCTCCTGTG
TCTACCGCGGGCAGCAGGCCGTGCTCAAGATCCCCAAGCCGGCGACGACC
TCCAGCCGCAGCGGCGGCGCCGCGCAGGACCTCCTCACGGAGATCTCCAT
CTACCGGCAGATCTCCCAGCGAGGCGGACACCCCAACATCGCCCGCGCCT
TCGGCGCCGGCACCCACGTCCAGCAGGGAGAGACGTCCCCGTCGCCGTTC
CTCCTGCTGGAGAGGCTCGAGGGAGGCACGCTGGAGAACGCCTTCGAGCG
GAGCACCGCGGTCTGGAGCGACCCGATCGGCAGGCTGCCCGTGGCCATCG
AGCTGGCGGAGGCGGTTGCGTTTCTGCACGAGGCGGCTATCCCAGGCGGG
GTCGTCCTGCACAGATGCAGCACCTGTTGGCGTTCAACGAGAACGTGACC
CTCGCCGAGCTCAACGAGGTCGAGCCGTTCTCCCAGGGAGGCTTCTGCGT
GATCTGCTCCTGTGTCTACCGCGGGCAGCAGGCCGTGCTCAAGATCCCCA
AGCCGGCGACGACCTCCAGCCGCAGCGGCGGCGCCGCGCAGGACCTCCTC
ACGGAGATCTCCATCTACCGGCAGATCTCCCAGCGAGGCGGACACCCCAA
CATCGCCCGCGCCTTCGGCGCCGGCACCCACGTCCAGCAGGGAGAGACGT
CCCCGTCGCCGTTCCTCCTGCTGGAGAGGCTCGAGGGAGGCACGCTGGAG
AACGCCTTCGAGCGGAGCACCGCGGTCTGGAGCGACCCGATCGGCAGGCT
GCCCGTGGCCATCGAGCTGGCGGAGGCGGTTGCGTTTCTGCACGAGGCGG
CTATCCCAGGCGGGGTCGTCCTGCACAGGGACCTGAAGCCATCGAATATC
GGGCTCTGCGGAGCGGGACACATCAAGGTGTTCGATTTGGGGCTTTCGGT
CGTGAGGCAGGTGCTTGAAGCGCCCACCAGAGTGGGACCTGAAGCCATCG
AATATCGGGCTCTGCGGAGCGGGACACATCAAGGTGTTCGATTTGGGGCT
TTCGGTCGTGAGGCAGGTGCTTGAAGCGCCCACCAGAGTGGTCGGGCATG
GCGGGTTCCAAGAGGTTCATGGCCCCCGAGGTCTGCACCGGGCTGTCGTA
CAACGAGAAGGTGGACGTGTACTCGTTCGCCCTCGTGCTGTGGCAGATCT
GCGCCCTGCGCAAGCCCTTCGCGGGCATGAGCGAGGCCGACCACTACCTC
CAGGTCGTGCAGGGGGGCCTAAGGCCCCCCCTCGACGCGCGGTGGCCGCC
GCAGCTCGTGCACCTGCTGCAGGCGTGCTGGCACGTACACCCGGACGCAA
GGCCGACCATGGTCCAGGTCCGCGACACCTTGCGGCAGATCTTCGCGATG
GGCGGTGGAGGGGGCGCGCCGCCCTACTAAGGAAAGGAGGAGGAGGAGGC
TGGATGGCTGCTTTTTTTGTACCGGGCGGAAATGGGCTAGTTTTTAGGCA
TGTGGACTTGGTCCGCAGAGACTTCACTACGTCCTCTCATCACTCATCTC
CGATTTTGCTGGGGTATCTGTCGTTGGTGCATATATGAGTCGGGCATGGC
GGGTTCCAAGAGGTTCATGGCCCCCGAGGTCTGCACCGGGCTGTCGTACA
ACGAGAAGGTGGACGTGTACTCGTTCGCCCTCGTGCTGTGGCAGATCTGC
GCCCTGCGCAAGCCCTTCGCGGGCATGAGCGAGGCCGACCACTACCTCCA
GGTCGTGCAGGGGGGCCTAAGGCCCCCCCTCGACGCGCGGTGGCCGCCGC
AGCTCGTGCACCTGCTGCAGGCGTGCTGGCACGTACACCCGGACGCAAGG
CCGACCATGGTCCAGGTCCGCGACACCTTGCGGCAGATCTTCGCGATGGG
CGGTGGAGGGGGCGCGCCGCCCTACTAAGGAAAGGAGGAGGAGGAGGCTG
GATGGCTGCTTTTTTTGTACCGGGCGGAAATGGGCTAGTTTTTAGGCATG
TGGACTTGGTCCGCAGAGACTTCACTACGTCCTCTCATCACTCATCTCCG
ATTTTGCTGGGGTATCTGTCGTTGGTGCATATATGA