mRNA_Ecto-sp9_F_contig9369.17529.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9369.17529.1
Unique NamemRNA_Ecto-sp9_F_contig9369.17529.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9369.17529.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYM8_ECTSI)

HSP 1 Score: 321 bits (823), Expect = 7.370e-111
Identity = 153/163 (93.87%), Postives = 156/163 (95.71%), Query Frame = 1 
Query:    1 QARLCIVLSIVIHTISLFVEGWYWPWQRNAAFGVFAVGGLVLCIYDQYMYAIGGIGFAVCALFDLFAVLRWITDDDNIVEGDDSFDGSSEGTTALWYALPPFLGAITMGLGAIFSFTAVFFWEDGDGTAMSDESKAVELGLAPLAAHPGAPPRAYYPQSPHPV 489
            +ARLCI LSIVIHTISLFVEGWYWPWQRNAAFGVFAVGGLVLCIYDQYMYAIGG+GFAVCALFDLFAVLRWITDDDNIVEGDDSFDGSSEGTTALWYALPP LGAITMGLGAIFSFTAVFFWEDGD TAM  E K VELGLAP+AAHPGAPPRAYYPQSPHPV
Sbjct:   13 KARLCIALSIVIHTISLFVEGWYWPWQRNAAFGVFAVGGLVLCIYDQYMYAIGGVGFAVCALFDLFAVLRWITDDDNIVEGDDSFDGSSEGTTALWYALPPLLGAITMGLGAIFSFTAVFFWEDGDCTAMPHEGKTVELGLAPIAAHPGAPPRAYYPQSPHPV 175
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BLAST of mRNA_Ecto-sp9_F_contig9369.17529.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS2_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 1.090e-52
Identity = 91/180 (50.56%), Postives = 113/180 (62.78%), Query Frame = 1 
Query:    4 ARLCIVLSIVIHTISLFVEGWYWPWQRNAAFGVFAVGGLVLCIYDQYMYAIGGIGFAVCALFDLFAVLRWITDDDNIVEGDDSF-----------DGSSEGTTALWYALPPFLGAITMGLGAIFSFTAVFFWEDGDGTAM-------------------SDESKAVELGLAPLAAHPGAP 453
            AR C +LSIVIH IS ++ G ++ WQRNA F  F +GGL+LC Y++YMY IG +GFA+CA+FD+ AVLRWIT DD I + DD +           + SS+ T  LW A+PPFLGAI MGLGAIF+FTA+F W+ G GTA+                     ESK  ELGLAP  AHP  P
Sbjct:   39 ARGCAILSIVIHAISFYLGGGFFVWQRNACFIAFVMGGLLLCFYERYMYVIGSLGFALCAVFDVLAVLRWITRDDEIFDSDDDYNTTFQVDDTQSEESSDSTILLWLAVPPFLGAIAMGLGAIFTFTAIFAWKYGGGTAIPHVPVAPQPTFDFTKQPQSQQESKTAELGLAPPTAHPRTP 218
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9369.17529.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAL4_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 1.400e-28
Identity = 68/178 (38.20%), Postives = 97/178 (54.49%), Query Frame = 1 
Query:    1 QARLCIVLSIVIHTISLFVEGWYWPWQRNAAFGVFAVGGLVLCIYDQYMYAIGGIGFAVCALFDLFAVLRWITDDDNIVEGDDSF-----------DGSSEG--TTALWYALPPFLGAITMGLGAIFSFTAVFFWEDGDGTAMSDESKAVELGLAPLAAHPGAPPRA----YYPQSPH 483
            QAR C + +I++H  +L V GW W WQ  A+   F + G++LC+YD+  Y  GGI FAV A+FD+  ++ WI   +N+   DD +           DG  E      LW+AL PFLGA+++GLGA+FSFT++ FW+D    A +         +A   AH  AP       Y PQ+ H
Sbjct:    8 QARACAICAIIVHVGALLVFGWLWVWQWIASVLAFIMCGVLLCMYDRCAYITGGICFAVAAVFDILVLVGWIAIYNNLQ--DDYYXXXXXXXXXXXDGEWEDWKNVILWFALLPFLGALSLGLGAVFSFTSLCFWKDAGSPAAA---------MAVTTAHVPAPQNTVSATYQPQNEH 174
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9369.17529.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized7.370e-11193.87protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYM8... [more]
Uncharacterized1.090e-5250.56protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.400e-2838.20protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9369contigEcto-sp9_F_contig9369:2304..4162 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-17_000010.1
Exons3
Model size492
Cds size492
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9369.17529.1prot_Ecto-sp9_F_contig9369.17529.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9369 2304..4162 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931016.9916675-CDS-Ecto-sp9_F_contig9369:2303..25151622931016.9916675-CDS-Ecto-sp9_F_contig9369:2303..2515Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9369 2304..2515 +
1692278994.4600506-CDS-Ecto-sp9_F_contig9369:2303..25151692278994.4600506-CDS-Ecto-sp9_F_contig9369:2303..2515Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9369 2304..2515 +
1622931017.0382833-CDS-Ecto-sp9_F_contig9369:3016..32001622931017.0382833-CDS-Ecto-sp9_F_contig9369:3016..3200Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9369 3017..3200 +
1692278994.4707043-CDS-Ecto-sp9_F_contig9369:3016..32001692278994.4707043-CDS-Ecto-sp9_F_contig9369:3016..3200Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9369 3017..3200 +
1622931017.0647275-CDS-Ecto-sp9_F_contig9369:4066..41621622931017.0647275-CDS-Ecto-sp9_F_contig9369:4066..4162Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9369 4067..4162 +
1692278994.481255-CDS-Ecto-sp9_F_contig9369:4066..41621692278994.481255-CDS-Ecto-sp9_F_contig9369:4066..4162Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9369 4067..4162 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9369.17529.1

>prot_Ecto-sp9_F_contig9369.17529.1 ID=prot_Ecto-sp9_F_contig9369.17529.1|Name=mRNA_Ecto-sp9_F_contig9369.17529.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=164bp
QARLCIVLSIVIHTISLFVEGWYWPWQRNAAFGVFAVGGLVLCIYDQYMY
AIGGIGFAVCALFDLFAVLRWITDDDNIVEGDDSFDGSSEGTTALWYALP
PFLGAITMGLGAIFSFTAVFFWEDGDGTAMSDESKAVELGLAPLAAHPGA
PPRAYYPQSPHPV*
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mRNA from alignment at Ecto-sp9_F_contig9369:2304..4162+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9369.17529.1 ID=mRNA_Ecto-sp9_F_contig9369.17529.1|Name=mRNA_Ecto-sp9_F_contig9369.17529.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1859bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9369:2304..4162+ (Ectocarpus species9 EcSCA_722f female)
CAGGCACGGCTATGTATTGTGTTGTCGATCGTCATCCACACGATCAGCCT
CTTCGTGGAAGGTTGGTATTGGCCTTGGCAGCGGAACGCTGCCTTTGGCG
TCTTTGCGGTGGGCGGCCTTGTCCTGTGCATCTACGACCAGTACATGTAC
GCCATAGGCGGCATAGGGTTCGCTGTATGTGCGCTGTTCGACCTCTTCGC
CGTTTTGCGATGGTGAGCCCCGGGAAAGTAGCGCAGATTCCAAGAGCTGC
CGAATTGAGCTTCGTTAGAATTGATCAGGATTGCATTCGTCACTGCTGCT
GTTCAGCACACCTTTGTTTTGGTTACGATGCTCGGCGTTCACTGTGGGTG
GAAAGGTGCGTGTAAACACCTCAGTCGTCCTTTTCGCAAGCGCAACAACT
GCAACGCAGCTCATGGTGTTAGACCGGCATTAATTTCTCCCACAGAGGCC
AGTTCAACTAGTCCGAGCTGCTTCGATTTGGTGCCAATTTGTGACGTTCT
GCAGTTGGTAGTCGAGATTATGTAGTTGGCTGACGGCTTGAAGTCAATGG
CTCCGTGTTTGCTGTCCATGAGGTTATCCCTCGGGAGTGGGGGGTTTGCT
CTACCAGTTCAAATAACGCCGAAGACGATAGACAGTCTTTGCGACCCACG
GTCAGCTGCCCGTCCTTAAATTTTCCGTAAAATCAATCCGCCACGACTGA
CCTTGAATTTCAGGATCACGGATGACGATAATATTGTCGAGGGTGACGAC
TCCTTCGACGGATCGAGCGAAGGCACTACTGCCCTCTGGTACGCCTTGCC
CCCTTTTCTCGGAGCCATCACCATGGGCCTGGGTGCTATTTTCTCCTTCA
CGGCCGTGTTCTTCTGGGAGGACGGTGACGGCACGGCCATGTCCGACGTG
AGTGCTGAAGAATAGTTTGGCATCGGTTCGCCGGTGCTAAAATAGTTTCA
CTGCAAATATCACCACCCCTGCTTCGTCCGAAGCGCCATGCCCAACAGAG
AGTCGGCATATCGACACTCCCTGACAAAGTAGCAACATTTGTTGTAGGCG
AGCTTTAGATTGTTTCTTGCCATTTATCGACGGTCGTTGGCCCCGCCCCG
CATATTGATGCTGTATATCGACACTTACCTTTCATAGAGAGAATGCCACG
ACCTGCTGTACGAACGCTACACGTAACCCGGTATCAGCCTGTCTTGCCTC
GCTTGTCCTTGTCTCGTGCTTCCGGCGTGAAGTTCGTTTTAGGTCAAATA
TTGCCCCACACGCTATCCAACCGTTCGATATTGTCATGGAGCTTGTCAAA
TATTCCTCTCCCCTCAAGGATTGTTTTGTTGTTCCTGTACGAAACGACCG
TTGGTGAGGTGGTCGGTGGTTCGTCTCATAGGATGATCGTTTTCCATACT
CACATACGTACTTTTGAGAAGTCACCTGTCCCACAAGCTGTAGCTGTCGT
TCTGCGGCAAGGCCCCATTTCCTTGTGGTTGTTTAGCGCCCGCACGTAAG
GACCTGGCAGTGAAGAAATTGACACGGCCTCGAACATTGCAAGATCTAAG
AACTTGAGCACCATTCTTGAGCTCGGTTTTGAACCCCACACTTCAACCTT
ACAGCGGCCATTGGTAGCTAAATAGGAACTCCAGCCTTGGCCAAAACTAT
TAATAGAGTTTCCTAAGTGCATGTGCTAACGCCGCGTGCTGCATCCCTTC
CGAACCACGTCCCGGCCGCTCCTATTCCCATCCTCGGCTCCACCAACGGG
CCTCATCCCGCAGGAGAGCAAGGCCGTGGAGCTCGGACTAGCACCGCTCG
CTGCGCACCCAGGGGCGCCACCCCGCGCGTACTACCCACAGTCGCCACAC
CCGGTATAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9369:2304..4162+

>mRNA_Ecto-sp9_F_contig9369.17529.1 ID=mRNA_Ecto-sp9_F_contig9369.17529.1|Name=mRNA_Ecto-sp9_F_contig9369.17529.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=984bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9369:2304..4162+ (Ectocarpus species9 EcSCA_722f female)
CAGGCACGGCTATGTATTGTGTTGTCGATCGTCATCCACACGATCAGCCT
CTTCGTGGAAGGTTGGTATTGGCCTTGGCAGCGGAACGCTGCCTTTGGCG
TCTTTGCGGTGGGCGGCCTTGTCCTGTGCATCTACGACCAGTACATGTAC
GCCATAGGCGGCATAGGGTTCGCTGTATGTGCGCTGTTCGACCTCTTCGC
CGTTTTGCGATGCAGGCACGGCTATGTATTGTGTTGTCGATCGTCATCCA
CACGATCAGCCTCTTCGTGGAAGGTTGGTATTGGCCTTGGCAGCGGAACG
CTGCCTTTGGCGTCTTTGCGGTGGGCGGCCTTGTCCTGTGCATCTACGAC
CAGTACATGTACGCCATAGGCGGCATAGGGTTCGCTGTATGTGCGCTGTT
CGACCTCTTCGCCGTTTTGCGATGGATCACGGATGACGATAATATTGTCG
AGGGTGACGACTCCTTCGACGGATCGAGCGAAGGCACTACTGCCCTCTGG
TACGCCTTGCCCCCTTTTCTCGGAGCCATCACCATGGGCCTGGGTGCTAT
TTTCTCCTTCACGGCCGTGTTCTTCTGGGAGGACGGTGACGGCACGGCCA
TGTCCGACGATCACGGATGACGATAATATTGTCGAGGGTGACGACTCCTT
CGACGGATCGAGCGAAGGCACTACTGCCCTCTGGTACGCCTTGCCCCCTT
TTCTCGGAGCCATCACCATGGGCCTGGGTGCTATTTTCTCCTTCACGGCC
GTGTTCTTCTGGGAGGACGGTGACGGCACGGCCATGTCCGACGAGAGCAA
GGCCGTGGAGCTCGGACTAGCACCGCTCGCTGCGCACCCAGGGGCGCCAC
CCCGCGCGTACTACCCACAGTCGCCACACCCGGTATAGGAGAGCAAGGCC
GTGGAGCTCGGACTAGCACCGCTCGCTGCGCACCCAGGGGCGCCACCCCG
CGCGTACTACCCACAGTCGCCACACCCGGTATAG
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