mRNA_Ecto-sp9_F_contig9362.17527.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig9362.17527.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ7_9PHAE) HSP 1 Score: 443 bits (1140), Expect = 1.620e-140 Identity = 309/380 (81.32%), Postives = 313/380 (82.37%), Query Frame = 1
Query: 151 SWKGGXSGSGTLARAASRGSLPAAXXXXXXXXTGAGPQGGVGGVDDAAPWEAAGSGGEGEKGARDEPRSLTDLLEDLRQARAIADSRGRQLKEAHSMWEAGEASRQKAEAELSLVSSELDLLRPFSKSLAARAEGKEAAEEAAGNLASEVETLREQLAAAVESAEKLGSRAGTAEDEAGASASKLSGLEKVVRRLGGXXEVAHSELAKERAGAEEAVARASKAERELDQARARAAVLDNKLATLEKDKLELLADANSSRARASALEEKYSAAKAAEAAESXXXXXXXXXXXXXXXXENLEAVSRMEEALAKEAAAEERADKAVKMEEDTRAEMAGKTEEVMRLTAQRNSAKSRADSLAKDLSRVCGGGRTLDQIEAIVTK 1290
SWKGG GSGTLARAASRGS PAA GA DEPRSLTDLLEDLRQARAIAD RGRQLKEAHSMWEAGEASRQKAEAELSLVSSELDLLRPFSKSLAARAEGKEAAEEAAGNLASEVETLREQLAAAVESAE+LGSRAGTAEDEAGASASKLSGLE XX VAHSELAKERAGAEEAVARASKAERELDQARARAAVL+NKLATLEKDKLELLADANSSRARASALEEKYSAA+AAEAAESXXXXXXXXXXXXXXX ENL+AV RADKAVKMEEDTRAEMAGKTEEVMRLTAQRNSAKSRADSLAKDLSRVCGGGRTLDQIEAIVTK
Sbjct: 895 SWKGG--GSGTLARAASRGSFPAA-------------------------------------GAGDEPRSLTDLLEDLRQARAIADYRGRQLKEAHSMWEAGEASRQKAEAELSLVSSELDLLRPFSKSLAARAEGKEAAEEAAGNLASEVETLREQLAAAVESAERLGSRAGTAEDEAGASASKLSGLEXXXXXXXXXXXVAHSELAKERAGAEEAVARASKAERELDQARARAAVLENKLATLEKDKLELLADANSSRARASALEEKYSAARAAEAAESXXXXXXXXXXXXXXXSENLKAVXXXXXXXXXXXXXXXRADKAVKMEEDTRAEMAGKTEEVMRLTAQRNSAKSRADSLAKDLSRVCGGGRTLDQIEAIVTK 1235
BLAST of mRNA_Ecto-sp9_F_contig9362.17527.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUZ2_ECTSI) HSP 1 Score: 343 bits (880), Expect = 3.990e-112 Identity = 239/269 (88.85%), Postives = 242/269 (89.96%), Query Frame = 1
Query: 484 LSLVSSELDLLRPFSKSLAARAEGKEAAEEAAGNLASEVETLREQLAAAVESAEKLGSRAGTAEDEAGASASKLSGLEKVVRRLGGXXEVAHSELAKERAGAEEAVARASKAERELDQARARAAVLDNKLATLEKDKLELLADANSSRARASALEEKYSAAKAAEAAESXXXXXXXXXXXXXXXXENLEAVSRMEEALAKEAAAEERADKAVKMEEDTRAEMAGKTEEVMRLTAQRNSAKSRADSLAKDLSRVCGGGRTLDQIEAIVTK 1290
LSLVSSELDLLRPFSKSLAARAEGKEAAEEAAGNLA+EVETLREQLAAAVESAE+LGSRAGTAEDEAGASASKLSGLEKVVRR XXEVAHSELAKERAGAEEA ARASKAERELDQARARAAVLDNKLATLEKDKLELLADANSSRARASALEEKYSAA+AAEA ES XXXXXXXXXXXXXXX RADKAVKMEEDTRAEMAGKTEEVMRLTAQRNSAKSRADSLAKDLSRVCGGGRTLDQIEAIVTK
Sbjct: 8 LSLVSSELDLLRPFSKSLAARAEGKEAAEEAAGNLATEVETLREQLAAAVESAERLGSRAGTAEDEAGASASKLSGLEKVVRRXXXXXEVAHSELAKERAGAEEAAARASKAERELDQARARAAVLDNKLATLEKDKLELLADANSSRARASALEEKYSAARAAEAVESEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRADKAVKMEEDTRAEMAGKTEEVMRLTAQRNSAKSRADSLAKDLSRVCGGGRTLDQIEAIVTK 276
BLAST of mRNA_Ecto-sp9_F_contig9362.17527.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUZ4_ECTSI) HSP 1 Score: 106 bits (264), Expect = 3.750e-21 Identity = 84/106 (79.25%), Postives = 84/106 (79.25%), Query Frame = 1
Query: 49 GEEADTDTGEESAADGETGRGXXXXXXXXXXXXX-SWKGGXSGSGTLARAASRGSLPAAXXXXXXXXTG--AGPQGGVGGVDDAAPWEAAGSGGEGEKGARDEPRS 357
GEE DTDTGEES ADGETGRG XXXXXX SWKGGX SGTLARAASRGSLPAA XXXXXX AGPQGGVGGV DAAPWEAAGSGGEGEKGA PRS
Sbjct: 411 GEEVDTDTGEESGADGETGRGGNHRGGXXXXXXRASWKGGXXXSGTLARAASRGSLPAATAXXXXXXXXXXAGPQGGVGGVADAAPWEAAGSGGEGEKGAGGGPRS 516 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9362.17527.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig9362.17527.1 >prot_Ecto-sp9_F_contig9362.17527.1 ID=prot_Ecto-sp9_F_contig9362.17527.1|Name=mRNA_Ecto-sp9_F_contig9362.17527.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=431bp QEPDSGSYYDTSEEDDGEEADTDTGEESAADGETGRGGGHRSGGGGARRSback to top mRNA from alignment at Ecto-sp9_F_contig9362:134..5277+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig9362.17527.1 ID=mRNA_Ecto-sp9_F_contig9362.17527.1|Name=mRNA_Ecto-sp9_F_contig9362.17527.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=5144bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9362:134..5277+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9362:134..5277+ >mRNA_Ecto-sp9_F_contig9362.17527.1 ID=mRNA_Ecto-sp9_F_contig9362.17527.1|Name=mRNA_Ecto-sp9_F_contig9362.17527.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2586bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9362:134..5277+ (Ectocarpus species9 EcSCA_722f female)back to top |