mRNA_Ecto-sp9_F_contig932.17482.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig932.17482.1 vs.
Match: NB-ARC (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYL2_9PHAE) HSP 1 Score: 2016 bits (5222), Expect = 0.000e+0 Identity = 1239/1497 (82.77%), Postives = 1272/1497 (84.97%), Query Frame = 3
Query: 687 LMRSVSDTLGAELLDVDGASTSSSDEERDGPAALARTPAGSSFDGSQQRSPKSTSESPDAIMRSRMVGFGSTDVRKSKRAGKGSSMIPTWARFSDSSERRGPSPAAAAAA----PASTSATQPASRLKNTGLAIEGKADVEEDAGEGVSAEGLRHKSSSSDPSTXXXXXXXXXXXXXXXXTLYGGGHGSPSGPLAVRKEDRLTAESLRRPA--------TDAKESPPAFQDPAPAQPSRASSKSRPVNXXXXXXXXXXXXXXXXXXXXXXQLLPPAGTXXXXXXXXXXXXX---TLQNEAFAFSRRPELSPTVARSSNTTAPATPAAVLSPPXXXELAPAPKP----KGAVPAFEPRIVDKRNIPPLARPVS----------------------------------------------------AAPRKAEAVPRNGGARGAGAGALERRGVPAKQRFSRSSSVDSLEVDEPYHPRH---TDRPMYVRSSTSFSEEDVVVGVGGRRSSAGAPAHPGPSASRGVREGRSAVSKAGRGAQERETVAGRRHRQAEEDAAIGVATLVSRRSPETVAAASHTSRSLPFLDERHPSVV-EDMGGGTGGAAGERASGGMMTTVDRLESFGTSRTDSFGPPNSDKSVGKLTIQPALSPDVYAAPSEAGTTMTCDSGSLPFAPTPATVXXXXXXXXXXXXXXXXXXSMVSYXXXXXXXXXXXXXXGGTDCTSPGSPPGGAVGEARASIYLPTAGARTIPAMSGLHLSGGARRDEAAQGPSGFEELWAVLEPTWDINSSFGASCAPKAMLLGGVYEKLRSFQVAVSSVCVRACGPVLGEVCRRCARAWAVLISRSVQDIVECTDLVRKIESSVLQLIDVVERYRASAVVRRFTLPLIGVATAWEEILAGGEGGDLQEPCARIEKAVAQLSEKEGEGGKRSGXXXXXXXXXXXXXXXXXXSRPGRRGSFSMDLKLPPCPSYWAKGQFDQLTPNRLADVLTLLHEPARFAELAELVTHASDVGPASRGYSAAWNCVRRAEGPALGRELRRALSATLVAAGELLPLPRVPPPPPAYVPREKLTEQIEATILHPFLPLGIAGIGGPSGSGKTVLAAAVVRDATVRCRFGNRVFWLHAGKGANHRLVSVLQGLADTVYAWLTDGEHAGGAXXXXXXXXXXXXXXXXXXXXXXXXDPGAALADPNLREPVRFRDQDQAVNYVADLCRGPLLAGLRCLVVVDDVHEREVVDALWKSGCQLLVTSPVKGLLQAVGAEATMAQPLGVEVARQLATKAAGEVALCEEGGRLVDLCRGCPLALAMSGAITQAVFSGGSDAREYRKPGLATPRSAIGEDTAAXXXXXXXXXX--PSTWSFSTLAAPVGAWVEQVVVGTSGSPPTNRQRQGGDAPSSRDKGRPAASGPGEDVRGVVAGAGRDGAVAGXXXXXXXXXXXXATVPGHDLGPEATAWANLARRIDAALARLGQSRSALCGLLAEAGPEQEMPVRQLVAVLTEV 4946
LMRSVSDTLGAELLDVDG STSSSDEERDGPAALARTP GSSFDGSQQRSPKSTSESPDAI+RSRMVGFGSTDVRKSKRAGKGSS+IPTWARFSDSSERRGPSPAAA AA P S SA +PASRLKNTGLAIEGKA+V+EDAGE VSAEGLRHKSSSSDP XXXXX LYGGGHGSPSGPLAVRKEDRLTAESLRRPA TDAKESP AFQDPAPAQPSRASSKSRP+N QLLPPAG XXXXXXXXXXXXX LQNEA AFSRRPELSPTVAR+SNTTAPATPAAVLSPPXXX KGAVP FEPRIVDKR IPPLARP++ A PR+AEA PRNGGARGAGAGALERRGVPAKQRFSRSSSVDSLEVDE YHPRH TDRPMYVRSSTSFSEEDVV GVGGRRSSAGAPAHPGPSASRGV+EG+SAV+KAGRG QE+ETVAGRR RQAEEDAA+GVATLVSRRSPETVA SHTS SLP LDERHPSVV +DMGGGTGG AGERASGGMMTTVDRLESFGTSRTDSFGPPNSDKSVGKLTIQPALSPDVYAAPSEAGTTMTCDSGSLPFAPTPA V XXXXXXXXXXXXXXXXX XXXXXXXXXXX SPGSPPGGAVGEARASIYLPTAG R IPAMSGLHLSGGA RDEAAQGPSGFEELWAVLEPTWDINSSFGAS APKAMLLGGVYEKLRSFQ AVSSVCVRACGPVLGEVCRRCARAWAVLIS SVQDIV+CTDLVR IESSVLQLIDVVERYRASAVVRRFTLPLIG TAW EI AGGEGGDLQEPCARIEKA+ +LSEKEGEGGKRS XXXXXXXXXXXXXXXXX SRPG RGSFSMDLKLPPCPSYWAKGQFDQLTPNRLADV+TLLHEPARFAELAELVTHASDVGPASR YSAAWNCVRRAEGPALGRELRRALSATLVAAGEL PLPRVPPPPPAYVPR+KLTEQIEATILHPFLPLGIAGIGGPSGSGKTVLAAAVVRDATVR RFG+RVFWLHAGKGA+HRLVSVLQ LADTVYAWLTDGEHAG A D GAALADPNLREPVRFRDQDQAVNYVADLCRGPLLAG RCLVVVDDVHEREVVDALWKSGCQLLVTSPVKGLLQAVGAEAT+A+PLG+EVARQLAT+AAGEVALCEEGGRLVDLCRGCPLALAMSGAITQAVFSGGSDAREYR PGLATPRS IGEDTAA XXXXXXXXX PSTWSFSTLAAPVGAWVEQVVVGTSGSPPTNRQRQGGDAPSS+DK RPAA+GP EDVRGV XXXXXXXXXXXX TVPGH+LGPEATAWANLARR+DAALARLGQSRSALCGLLAEAGPEQE+PVRQLVAVLTE+
Sbjct: 287 LMRSVSDTLGAELLDVDGVSTSSSDEERDGPAALARTPVGSSFDGSQQRSPKSTSESPDAIVRSRMVGFGSTDVRKSKRAGKGSSIIPTWARFSDSSERRGPSPAAAPAAAXATPVSASALKPASRLKNTGLAIEGKANVKEDAGEAVSAEGLRHKSSSSDPXXXXXXX------------LYGGGHGSPSGPLAVRKEDRLTAESLRRPASAPGGVLATDAKESPLAFQDPAPAQPSRASSKSRPLNSSPPERHERASPPLGRGRVNAPQLLPPAGAXXXXXXXXXXXXXXXGALQNEACAFSRRPELSPTVARNSNTTAPATPAAVLSPPXXXXXXXXXXXXXXXKGAVPTFEPRIVDKRKIPPLARPLATDPPLLQRQQQQQHGTPDAAAVAQKRFEAIYRDSSYDSSESPPLSTSGREVLAVPRRAEAAPRNGGARGAGAGALERRGVPAKQRFSRSSSVDSLEVDESYHPRHPRHTDRPMYVRSSTSFSEEDVVAGVGGRRSSAGAPAHPGPSASRGVQEGQSAVNKAGRGTQEQETVAGRRPRQAEEDAAVGVATLVSRRSPETVATPSHTSSSLPLLDERHPSVVIKDMGGGTGGVAGERASGGMMTTVDRLESFGTSRTDSFGPPNSDKSVGKLTIQPALSPDVYAAPSEAGTTMTCDSGSLPFAPTPAAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------SPGSPPGGAVGEARASIYLPTAGVRAIPAMSGLHLSGGAPRDEAAQGPSGFEELWAVLEPTWDINSSFGASNAPKAMLLGGVYEKLRSFQAAVSSVCVRACGPVLGEVCRRCARAWAVLISSSVQDIVKCTDLVR-IESSVLQLIDVVERYRASAVVRRFTLPLIGEETAWTEIFAGGEGGDLQEPCARIEKAIVELSEKEGEGGKRS-XXXXXXXXXXXXXXXXXSSRPGLRGSFSMDLKLPPCPSYWAKGQFDQLTPNRLADVVTLLHEPARFAELAELVTHASDVGPASRDYSAAWNCVRRAEGPALGRELRRALSATLVAAGEL-PLPRVPPPPPAYVPRKKLTEQIEATILHPFLPLGIAGIGGPSGSGKTVLAAAVVRDATVRRRFGDRVFWLHAGKGADHRLVSVLQSLADTVYAWLTDGEHAGVASSSALPRRSVGSGGGGG-------DAGAALADPNLREPVRFRDQDQAVNYVADLCRGPLLAGFRCLVVVDDVHEREVVDALWKSGCQLLVTSPVKGLLQAVGAEATVARPLGMEVARQLATRAAGEVALCEEGGRLVDLCRGCPLALAMSGAITQAVFSGGSDAREYRNPGLATPRSTIGEDTAAGXXXXXXXXXEEPSTWSFSTLAAPVGAWVEQVVVGTSGSPPTNRQRQGGDAPSSKDKRRPAATGPEEDVRGVAC-------AGXXXXXXXXXXXXXXTVPGHELGPEATAWANLARRVDAALARLGQSRSALCGLLAEAGPEQELPVRQLVAVLTEL 1745
BLAST of mRNA_Ecto-sp9_F_contig932.17482.1 vs.
Match: NB-ARC (and TPR repeat-containig protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRB0_ECTSI) HSP 1 Score: 74.3 bits (181), Expect = 2.320e-9 Identity = 70/219 (31.96%), Postives = 103/219 (47.03%), Query Frame = 3
Query: 3630 PPP------PPAYVPREKLTEQIEATIL---HPFLPLGIAGIGGPSGSGKTVLAAAVVRDATVRCRFGNRVFWLHAGKGANHRLVSVLQGLADTVYAWLTDGEHAGGAXXXXXXXXXXXXXXXXXXXXXXXXDPGAALADPNLREPVRFRDQDQAVNYVADLCRGPLLA-GLRCLVVVDDVHEREVVDALWKSGCQLLVTSPVKGLL---QAVGAEATM 4247
PPP PP ++PR + E++ A +L P+ P + I GP G+GKTVL++AV R + VR F + +FWL AGK A RL +L+ LA + L+ G+ AG + A D + + + + VA L GL CL+VVDD+ +RE +D + G ++VT+ KGLL Q G AT+
Sbjct: 533 PPPVLCPELPPHHLPRTAMQERVAAGLLGRVSPWDPPMV--ITGPPGAGKTVLSSAVARRSDVRRHFRDGIFWLPAGKDATERLPWLLEYLAVQLSLVLSSGQ-AGESKANRMAALTGR----------------GAKQDDEVEVELPWGTRGPREGEVAAFLAAHLATRGLTCLLVVDDLWDRESLDQVRDLGFHVMVTANSKGLLWTQQGAGLAATL 732
BLAST of mRNA_Ecto-sp9_F_contig932.17482.1 vs.
Match: NB-ARC (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJA6_9PHAE) HSP 1 Score: 72.8 bits (177), Expect = 3.840e-9 Identity = 77/257 (29.96%), Postives = 114/257 (44.36%), Query Frame = 3
Query: 3639 PPAYVPREKLTEQIEATIL--HPFLPLGIAGIGGPSGSGKTVLAAAVVRDATVRCRFGNRVFWLHAGKGANHRLVSVLQGLADTVYAWLTDGEHAGGAXXXXXXXXXXXXXXXXXXXXXXXXDPGAALADPNLREPVRFRDQDQAVNYVADLCRGPLLAGLRCLVVVDDVHEREVVDALWKSGCQLLVTSPVKGLLQAVGAEATMAQPLGVEVARQLATKAAGEVA-----LCEEGGRLVDLCRGCPLALAMSGAIT 4388
P +YV R + E + I P P + G+GG GKT+L +AVVR + VR F VFW+ G+ A + L+S+LQGLA + A TD H P++ E + Q A VA P L VV+DDV EREVVDAL G ++LVT+ + ++ G + + E A +L K + V + + ++V LC PL LA++G+++
Sbjct: 12 PQSYVERAAVQEVADGLIKPEEPRAPYAVVGMGG---GGKTMLVSAVVRKSNVREHFRGGVFWMRVGRHAKNSLLSLLQGLAREMSAAPTDTPHG----------------------------------VPHVLESLEQVKQHLAT--VASAGTSPRL------VVLDDVWEREVVDALLSLGLKVLVTTRDRSVVGVSGGLLELGD-MTEEEALELLLKTSRTVGQPGHEVRTQMTKVVVLCGHLPLVLAIAGSMS 222
BLAST of mRNA_Ecto-sp9_F_contig932.17482.1 vs.
Match: NB-ARC (and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH19_ECTSI) HSP 1 Score: 73.2 bits (178), Expect = 4.830e-9 Identity = 78/268 (29.10%), Postives = 120/268 (44.78%), Query Frame = 3
Query: 3603 GELLPLPRVPPP-PPAYVPREKLTEQIEATILHPFLPLGIAG-IGGPSGSGKTVLAAAVVRDATVRCRFGNRVFWLHAGKGANHRLVSVLQGLADTVYAWLTDGEHAGGAXXXXXXXXXXXXXXXXXXXXXXXXDPGAALADPNLREPVRFRDQDQAVNYVADLCRGPLLAGLRCLVVVDDVHEREVVDALWKSGCQLLVTSPVKGLLQAVGAEA-TMAQPLGVEVARQLATKAA-GEVALCEEGGRLVDL-CRGCPLALAMSGAITQ 4391
G L +PR P P YV R + E++ + HP + G G GKT++A++VVRD VR RF +FW+ G+ + +L+ LA + TD + PN RF ++A+ +++ +C GLRCLVV+D+V EVV+A +G +LVT+ + ++ AV A T + E A ++ +KA+ + L E R V L C PLAL M GA+ +
Sbjct: 230 GALAEIPREAPVLPTTYVQRTAMLEEVVDDLTHPHRSASATHCLLGMGGGGKTLIASSVVRDDRVRARFKRGIFWVPVGREGKD-VALLLEHLAVELSRVPTD----------------------------------TPRSCPN-----RFSGAEEALRHLSSVCAED---GLRCLVVLDNVWNVEVVNAFASTGFHVLVTTRQRAVISAVHAGVWTEVGDMSEEDALEVLSKASQADGPLPAEEARQVALDCGMLPLALGMIGALAK 454
BLAST of mRNA_Ecto-sp9_F_contig932.17482.1 vs.
Match: NB-ARC (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU94_9PHAE) HSP 1 Score: 71.6 bits (174), Expect = 1.390e-8 Identity = 73/237 (30.80%), Postives = 103/237 (43.46%), Query Frame = 3
Query: 3690 ILHPFLPLGIAGIGGPSGSGKTVLAAAVVRDATVRCRFGNRVFWLHAGKGANHRLVSVLQGLADTVYAWLTDGEHAGGAXXXXXXXXXXXXXXXXXXXXXXXXDPGAALADPNLREPVRFRDQDQAVNYVADLCRGPLLAGLRCLVVVDDVHEREVVDALWKSGCQLLVTSPVKGLLQAVGAEATMAQPLGVEVARQLATKAAGEVALCEEGGR-----LVDLCRGCPLALAMSGAI 4385
I +P P + G G GK+VLA+AVVR ++VR F +FWL G+GA RL+ +LQGL + A TD H G +L + R + VA P L VV+DDV EREVVDAL G ++LVT+ + ++ V + E A +L K +G V + R +V LC PL LA++G++
Sbjct: 164 ITNPEEPRAPYTVFGMGGGGKSVLASAVVRKSSVREHFRGGIFWLTVGRGAKKRLLPLLQGLTGDMGAAPTDTPH------------------------------GVPHVLDSLEQVQRH------LGAVASTGTSPRL------VVLDDVWEREVVDALLPLGFKVLVTTRDRSVV-GVPTRCLELGDMTEEEALELLLKTSGTVGRPGDSVRTVMTKVVTLCGRLPLVLAIAGSL 357
BLAST of mRNA_Ecto-sp9_F_contig932.17482.1 vs.
Match: NB-ARC (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE) HSP 1 Score: 67.4 bits (163), Expect = 2.190e-7 Identity = 72/255 (28.24%), Postives = 110/255 (43.14%), Query Frame = 3
Query: 3645 AYVPREKLTEQIEATIL--HPFLPLGIAGIGGPSGSGKTVLAAAVVRDATVRCRFGNRVFWLHAGKGANHRLVSVLQGLADTVYAWLTDGEHAGGAXXXXXXXXXXXXXXXXXXXXXXXXDPGAALADPNLREPVRFRDQDQAVNYVADLCRGPLLAGLRCLVVVDDVHEREVVDALWKSGCQLLVTSPVKGLLQAVGAEATMAQPLGVEVARQLATKAAGEVALCEEGGR-----LVDLCRGCPLALAMSGAIT 4388
+YV R + E + P P + G+GG GK+VLA+AVVR +VR F +FW+ G+GA L+++LQGLA + A TD H P +Q ++A + L VV+DDV EREVVDA G ++L+T+ + ++ V A + E A +L K++G V + R +V LC PL LA++G+++
Sbjct: 219 SYVERAAVQEVADGLTSPEDPRAPYTVVGMGG---GGKSVLASAVVRKPSVREHFRGGIFWVRVGRGAKSSLLALLQGLAREMGAARTDAPHT---------------------------------------VPHVLDGLEQVKQHLAAVASTGTFPRL---VVLDDVWEREVVDAFVPLGFKVLLTTRDRSVV-VVPAGRLEVGDMTEEEALELLRKSSGAVGQPGDDVRTKMTKVVALCGHLPLVLAIAGSMS 427
BLAST of mRNA_Ecto-sp9_F_contig932.17482.1 vs.
Match: NB-ARC (and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD7_ECTSI) HSP 1 Score: 67.4 bits (163), Expect = 2.930e-7 Identity = 71/235 (30.21%), Postives = 104/235 (44.26%), Query Frame = 3
Query: 3696 HPFLPLGIAGIGGPSGSGKTVLAAAVVRDATVRCRFGNRVFWLHAGKGANHRLVSVLQGLADTVYAWLTDGEHAGGAXXXXXXXXXXXXXXXXXXXXXXXXDPGAALADPNLREPVRFRDQDQAVNYVADLCRGPLLAGLRCLVVVDDVHEREVVDALWKSGCQLLVTSPVKGLLQAVGAEATMAQPLGVEVARQLATKAAGEVALCEEGG----RLVDLCRGCPLALAMSGAIT 4388
P P + GIGG GK+VLA+AVVR +VR F + W+ G+GA + L+ +LQGLA V A TD H G A +L + Q + VA P L VV+DDV EREVVDA G +LL+T+ + ++ + + E A +L K +G V ++ ++V LC PL LA++G+++
Sbjct: 77 EPRTPYTVVGIGG---GGKSVLASAVVRMPSVREHFRGGISWVRVGRGAKNSLLPLLQGLAREVGAAPTDAPH------------------------------GVPHALDSLEQ------VQQHLAAVASTRNSPRL------VVLDDVWEREVVDAFVPLGFKLLLTTRDRSIVCDPAGRLELGD-MTEEEALELLRKTSGTVDPGDDVRMKMTKVVALCGHLPLVLAIAGSMS 265
BLAST of mRNA_Ecto-sp9_F_contig932.17482.1 vs.
Match: NB-ARC (and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG5_ECTSI) HSP 1 Score: 67.4 bits (163), Expect = 3.180e-7 Identity = 84/279 (30.11%), Postives = 118/279 (42.29%), Query Frame = 3
Query: 3573 RALSATLVAAGELLPLPRVPPPPPAYVPREKLTEQIEATIL--HPFLPLGIAGIGGPSGSGKTVLAAAVVRDATVRCRFGNRVFWLHAGKGANHRLVSVLQGLADTVYAWLTDGEHAGGAXXXXXXXXXXXXXXXXXXXXXXXXDPGAALADPNLREPVRFRDQDQAVNYVADLCRGPLLAGLRCLVVVDDVHEREVVDALWKSGCQLLVTSPVKGLLQAVGAEATMAQPLGVEVARQLATKAAGEVALCEEGGRL-----VDLCRGCPLALAMSGAIT 4388
R L V AG L LPR YV R + E + P P + G+GG GK+VLA+AVVR +VR F + W+ G+GA + L+ +LQGLA + TD HA P + + + Q A VA P L VV+DDV EREVVDAL G ++L+T+ ++ V A + E A +L K +G V + R+ V LC PL LA++G+++
Sbjct: 213 RLLDMAAVPAGAL-DLPR------GYVERAAVQEVADGLTAPEEPRAPYTVVGLGG---GGKSVLASAVVRKPSVREHFRGGISWVRVGRGAKNSLLPLLQGLAREMGVAPTDAPHA----------------------------------VPQVLDSLEQVQQHLAA-VVASTGTSPRL------VVLDDVWEREVVDALVPLGFKVLLTTRDWSVV-VVPARRLDLGDMTEEEALELLRKTSGTVGQPGDYVRMKMTKVVALCGHLPLVLAIAGSMS 439
BLAST of mRNA_Ecto-sp9_F_contig932.17482.1 vs.
Match: NB-ARC (and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI) HSP 1 Score: 67.0 bits (162), Expect = 3.740e-7 Identity = 68/232 (29.31%), Postives = 102/232 (43.97%), Query Frame = 3
Query: 3708 PLGIAGIGGPSGSGKTVLAAAVVRDATVRCRFGNRVFWLHAGKGANHRLVSVLQGLADTVYAWLTDGEHAGGAXXXXXXXXXXXXXXXXXXXXXXXXDPGAALADPNLREPVRFRDQDQAVNYVADLCRGPLLAGLRCLVVVDDVHEREVVDALWKSGCQLLVTSPVKGLLQAVGAEATMAQPLGVEVARQLATKAAGEVALCEEGGR-----LVDLCRGCPLALAMSGAIT 4388
P + G+GG GK+VLA+A VR +VR F +FW+ G+GA L+++LQGLA V A TD H P++ + R Q + VA P L VV+DDV EREVVDA G ++L+T+ + ++ + + E A +L K +G V + R +V LC PL LA++G+++
Sbjct: 296 PYTVVGMGG---GGKSVLASAAVRKPSVREHFRGGIFWVRVGRGAKSSLLALLQGLAWDVGAAPTDAPHG----------------------------------VPHVLD--RLEQVQQHLAAVASTGTSPRL------VVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVGLPAGRLELGD-MTEEEALELLRKTSGTVGQPGDDVRTKMTKVVALCGHLPLVLAIAGSMS 481
BLAST of mRNA_Ecto-sp9_F_contig932.17482.1 vs.
Match: NB-ARC (and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G720_ECTSI) HSP 1 Score: 64.7 bits (156), Expect = 1.980e-6 Identity = 66/232 (28.45%), Postives = 101/232 (43.53%), Query Frame = 3
Query: 3708 PLGIAGIGGPSGSGKTVLAAAVVRDATVRCRFGNRVFWLHAGKGANHRLVSVLQGLADTVYAWLTDGEHAGGAXXXXXXXXXXXXXXXXXXXXXXXXDPGAALADPNLREPVRFRDQDQAVNYVADLCRGPLLAGLRCLVVVDDVHEREVVDALWKSGCQLLVTSPVKGLLQAVGAEATMAQPLGVEVARQLATKAAGEVALCEEGGR-----LVDLCRGCPLALAMSGAIT 4388
P + G+GG GK+VLA+AVVR +VR F +FW+ G+GA L+++LQGLA V GAA D P +Q ++A + + LVV+DDV EREVVDA G ++L+T+ + ++ + + E A +L K +G V + R +V LC PL LA++G+++
Sbjct: 279 PYTVVGMGG---GGKSVLASAVVRKPSVREHFRGGIFWVRVGRGAKSSLLALLQGLARDV---------------------------------------GAAPTDAPCGVPRVLDSLEQVRQHLAAVTS---TGTSQRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVGVPAGRLELGD-VTEEEALELLRKTSGAVGQPGDDVRTKMTKVVALCGHLPLVLAIAGSMS 464 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig932.17482.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig932.17482.1 >prot_Ecto-sp9_F_contig932.17482.1 ID=prot_Ecto-sp9_F_contig932.17482.1|Name=mRNA_Ecto-sp9_F_contig932.17482.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=202bp MAARNTPVRDELVLSLDDILPVLKNGDGIPVVKHNNRGQSDQRRLRLDTDback to top mRNA from alignment at Ecto-sp9_F_contig932:20361..26413+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig932.17482.1 ID=mRNA_Ecto-sp9_F_contig932.17482.1|Name=mRNA_Ecto-sp9_F_contig932.17482.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=6053bp|location=Sequence derived from alignment at Ecto-sp9_F_contig932:20361..26413+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig932:20361..26413+ >mRNA_Ecto-sp9_F_contig932.17482.1 ID=mRNA_Ecto-sp9_F_contig932.17482.1|Name=mRNA_Ecto-sp9_F_contig932.17482.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1212bp|location=Sequence derived from alignment at Ecto-sp9_F_contig932:20361..26413+ (Ectocarpus species9 EcSCA_722f female)back to top |