mRNA_Ecto-sp9_F_contig9302.17465.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9302.17465.1
Unique NamemRNA_Ecto-sp9_F_contig9302.17465.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9302.17465.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPX8_ECTSI)

HSP 1 Score: 249 bits (636), Expect = 4.330e-81
Identity = 126/130 (96.92%), Postives = 130/130 (100.00%), Query Frame = 2 
Query:    2 MKNRVMHLEAALVRSELDLCRARTELEANRREAEALSQAKDAATDRQDRHPVVPGDVPALYHALEGSVVLLQIASEKMLRLEHTIAKHREAMPRHLYRELQDCVTQDAMLLSPLPRRRRQHGHHHLHHQR 391
            MKNRVMHLEAALVRSELDLCRARTELEANRREAEALSQAKDAATDR+DRHPVVPGD+PALYHALEGSVVLLQIASEKMLRLEHTIAKHREAMPR+LYRELQDCVTQDAMLLSPLPRRR+QHGHHHLHHQR
Sbjct:    1 MKNRVMHLEAALVRSELDLCRARTELEANRREAEALSQAKDAATDRRDRHPVVPGDIPALYHALEGSVVLLQIASEKMLRLEHTIAKHREAMPRYLYRELQDCVTQDAMLLSPLPRRRQQHGHHHLHHQR 130
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BLAST of mRNA_Ecto-sp9_F_contig9302.17465.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJF2_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 3.100e-56
Identity = 104/130 (80.00%), Postives = 110/130 (84.62%), Query Frame = 2 
Query:    2 MKNRVMHLEAALVRSELDLCRARTELEANRREAEALSQAKDAATDRQDRHPVVPGDVPALYHALEGSVVLLQIASEKMLRLEHTIAKHREAMPRHLYRELQDCVTQDAMLLSPLPRRRRQHGHHHLHHQR 391
            MKNRVMHLEAALVRSELDLCR                   +AATDR+DRHPVVPGD+PALYHALEGSVVLLQIASEKML LEHTIAKHREAMPRHLYRELQDCVTQDAMLLSPLPRRR+QHGH+H+HHQR
Sbjct:  631 MKNRVMHLEAALVRSELDLCRXXXXXXXXXXXXXXXXXXXEAATDRRDRHPVVPGDIPALYHALEGSVVLLQIASEKMLCLEHTIAKHREAMPRHLYRELQDCVTQDAMLLSPLPRRRQQHGHYHVHHQR 760
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9302.17465.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized4.330e-8196.92protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.100e-5680.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9302contigEcto-sp9_F_contig9302:7..3059 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_001750.1
Exons3
Model size849
Cds size393
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9302.17465.1prot_Ecto-sp9_F_contig9302.17465.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9302 462..3058 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931008.6082819-UTR-Ecto-sp9_F_contig9302:6..4611622931008.6082819-UTR-Ecto-sp9_F_contig9302:6..461Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9302 7..461 -
1692278990.8546734-UTR-Ecto-sp9_F_contig9302:6..4611692278990.8546734-UTR-Ecto-sp9_F_contig9302:6..461Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9302 7..461 -
1622931008.681413-UTR-Ecto-sp9_F_contig9302:3058..30591622931008.681413-UTR-Ecto-sp9_F_contig9302:3058..3059Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9302 3059..3059 -
1692278990.8978171-UTR-Ecto-sp9_F_contig9302:3058..30591692278990.8978171-UTR-Ecto-sp9_F_contig9302:3058..3059Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9302 3059..3059 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931008.625799-CDS-Ecto-sp9_F_contig9302:461..6381622931008.625799-CDS-Ecto-sp9_F_contig9302:461..638Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9302 462..638 -
1692278990.8655174-CDS-Ecto-sp9_F_contig9302:461..6381692278990.8655174-CDS-Ecto-sp9_F_contig9302:461..638Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9302 462..638 -
1622931008.6425893-CDS-Ecto-sp9_F_contig9302:1679..17751622931008.6425893-CDS-Ecto-sp9_F_contig9302:1679..1775Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9302 1680..1775 -
1692278990.876038-CDS-Ecto-sp9_F_contig9302:1679..17751692278990.876038-CDS-Ecto-sp9_F_contig9302:1679..1775Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9302 1680..1775 -
1622931008.661118-CDS-Ecto-sp9_F_contig9302:2938..30581622931008.661118-CDS-Ecto-sp9_F_contig9302:2938..3058Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9302 2939..3058 -
1692278990.8895578-CDS-Ecto-sp9_F_contig9302:2938..30581692278990.8895578-CDS-Ecto-sp9_F_contig9302:2938..3058Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9302 2939..3058 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9302.17465.1

>prot_Ecto-sp9_F_contig9302.17465.1 ID=prot_Ecto-sp9_F_contig9302.17465.1|Name=mRNA_Ecto-sp9_F_contig9302.17465.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=131bp
MKNRVMHLEAALVRSELDLCRARTELEANRREAEALSQAKDAATDRQDRH
PVVPGDVPALYHALEGSVVLLQIASEKMLRLEHTIAKHREAMPRHLYREL
QDCVTQDAMLLSPLPRRRRQHGHHHLHHQR*
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mRNA from alignment at Ecto-sp9_F_contig9302:7..3059-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9302.17465.1 ID=mRNA_Ecto-sp9_F_contig9302.17465.1|Name=mRNA_Ecto-sp9_F_contig9302.17465.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3053bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9302:7..3059- (Ectocarpus species9 EcSCA_722f female)
GATGAAGAATCGGGTAATGCACCTGGAGGCGGCCCTGGTGAGGTCGGAGC
TGGACCTGTGCCGGGCGAGGACCGAGCTCGAGGCGAACCGGCGGGAGGCG
GAGGCCCTCAGCCAGGCCAAGGTGTGTGTGTGTGTGTGTGTGTGTTGTTA
GCATCAACCGTGCTAATTGCGTGAACCAATGGTCAGACGTTAGACGAGAA
ACACGAACACTGTCCAATCAAAGGATAAGGTGTGTGTGTTTGTATTTTGC
ATCGACGGCGCTAACCGGCTGACCAATGAAAAAACGTCAGGCTCAGTGCG
GTTGAATACACAAAAAGCTTGTAAAGGGTGCGCGTGTGTGTGTGTTTTCT
TAATTAGCATTGACCACGCTAACCGGCTGACCATTGAAAATACGTCAGTC
TCACTGCGGGTGAAAACACAAAATGCCTTCTTAAGGCCATGATCTGGAAC
TCCGTGAGGGGGCGTCATGGTGTGTGTGTGTGTGTGTGTGTTTGTTTAAC
ATGGACCGCGCCAACCGGCTGACCAATGAAAAGACAAGGCGTCCGCCTTG
TGACGGGATAGCACACACAAACACGCTCTAATCAAAGGGTATGGTGTGTT
GTGTGTGTGTGTGTGTGTGTGTATTTTGCATCGCCGGCGCCTAGTGGCTG
AACCAGTGAAAATACGTGAACCTTGGTGCCGCTGACAACGGAAATGTGTA
GTGGCTTGTGTGTTTCGTTGGTTGCATCGACTGCGCTCATTGGCTGACCA
GTGAATGGACCTCAGCCATAAGCTTGGGGGCCCAAACAGGAATACGTTTC
TTAAGATGATGATCTAGCTCTCTCGCGAGGAGGGGGCATGGATTTGGCTA
GCCCGCTCTTCGGGATCGAAGACTGCTGGGTATGCGTGTGCGTCTCTGTG
ACTAGTAGCACCGACTGCGCCTACCAGCTGGCCGGGCGTTCGTGAAGCGC
CGTGCTCAGCGTGCCACCCGGCGGGTGCATTTCTTTTCTAGTGAGTACAT
GGGGTGTTGGGTGTTTGCTTTGGCTACTGCGTACGGTATTGTCGACAGCG
CCAAATGGCCGCTTTGGGCGACGACGTCGGGTCCCCGGTGGACACCAGAC
GGCCCTTTTTCGAGGCGTTGGTTTGTTTGGGCCCGAACACACCAAAGCCT
CAGGGATTGCACGGCTTGTGCAATCATTCCCATTGATTACACGTATCCCC
GGCCCTTGAATATCCCACACGCCTCTCCCCCGCCTTTTTTTGGTTGCGTT
TCTTGTTTCTCTACGTTTTTTTTTTGTGGTGAAGGACGCTGCGACCGATC
GACAAGACCGCCACCCTGTGGTGCCTGGCGACGTCCCGGCTCTGTACCAC
GCTCTGGAAGGGTCAGTCGTTCTCTTACAGGTGATCGGCTCGTCTCGCCC
CGCTTCGCTTCCCAGCAGAGGGTGTCTGCTGCTGTATGAGTTGCCGAAAA
CCAAATGATGTTGCTTCCAACAGGGTGTCTACTGCTGCATGCCTATCTTT
TATCAATAACCAAACGTTGTTCCTTTCAACGTGGTATCTACCCGTCTGCC
TACAAACCCGAAATGTTGTTGCTTCTATCAGGGTAACTACATGGAAACCT
AGAAACCAATTACTTTGTTGGATGTCTTCATGTCTTCCTACAAACCAAGT
GTTGTTTCATCCAACAGGGAGTCTTTGGTGCGTCCCCAAAAACCAAACGT
TGGTTGTTGCTGCTGCTGTTGCTGTTGCTGTGATTTATGGTGGAGGTTGT
GGTGTTGGGTGGCGGCGACGGCGGTGGTGGGTTTTGTGGTAAAACGGTCT
CGTGTAAGACTTCTGTTCGGGTCGTCACCGCCTAAAGTCCGAGGTAGAGG
TAGAGCGGGGAGTGATCGGGTCCGGTCGGACACACGGGCAGTCGATACAC
CTGGCCTTCAAGCCAAGCGCACGCCGGCGGGCAGCGTTTGCCGTCTTCCC
CCCGAACAAGTCGTTGCCCTAGCAGGTGGCAGAGGCACAACAATCGTGGC
ACTGCCATGAAACAATTTAGACGCAGTTTCTCTCCGTGTCCATGGCAAGG
TTTGAGGAGCCATCTTCGTGCCATCGATTCAAGTTCTCAAGTCCCTCATA
CCTTGTGCCTTGGTGGACTTCTAATCTACGCATGACGCATTTTACCAGTT
ACGATCTGATTCTGCTGCTGTTTTCGTTTTTTCTCTCTCGTGTTCCTGAG
CTACATAGTATTCTGCTGTACCGTTTTCGTTTTTTCTCTCTCGTGTTCCT
GAGCTACATAGCTACCCCAGCCGCTCCTAGGCGGCAGGTAGGGCCTTCAT
CTCGTATCGTTTTTGGCTGTTGAGTCTCTTCTGTAGTTGGGTTCGTCCAA
CTGGAAACAACTTTTCACACGATTGGTGATTGGTTGACCGCCTCGGCTTT
TCCTCCCCCTTGTCGAACCAGATCGCCTCGGAGAAGATGCTTCGCCTGGA
GCACACCATCGCCAAGCACCGGGAGGCGATGCCGAGGCACCTCTATAGGG
AGCTGCAGGACTGCGTTACTCAGGACGCGATGCTGCTGTCCCCTCTCCCG
CGCCGTCGCCGGCAGCACGGCCACCACCACCTCCACCACCAGCGTTAAAG
GGCTCTCGCTCTTGACGACACGCCAGTCAGTGCTGTAGTGCTGTAACCGC
GTGAGGAGAAGGAAGAAACACCTGCTGTTTGAAGAGCAGTGGTACACTGC
AGTAGAGCGAGTTTCTGCTGCTGCTGCTGCTGCTGCTGCTGCCTCGGCTG
CTGCTGATGTTTTAGTCGAAGTTTTCGGGTCGATGGCTTTGCCGTGTTGT
CACCCCCCAACTCAAATCTCGCGCACGCGGAGTTGCGACGCAAGACGGGG
GGCGCTGTTTTTTGAGGCGCCCCTTGTTGCCTAGGAAAGGAAAAGCGCAC
ATTTTAAAGGCATTTTAGAGTCCGGACGTTGCCGTCTGGAACACCGCACC
GATTAACTCAGAGGGCGGAGTGTAAGTGTACATTTTTTTGTCGTATGGGG
AATTGTCGATTGTGGTGGGAGGTTGTCGATTGTAATCAGGGTTTTGTGGA
TGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9302:7..3059-

>mRNA_Ecto-sp9_F_contig9302.17465.1 ID=mRNA_Ecto-sp9_F_contig9302.17465.1|Name=mRNA_Ecto-sp9_F_contig9302.17465.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=786bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9302:7..3059- (Ectocarpus species9 EcSCA_722f female)
ATGAAGAATCGGGTAATGCACCTGGAGGCGGCCCTGGTGAGGTCGGAGCT
GGACCTGTGCCGGGCGAGGACCGAGCTCGAGGCGAACCGGCGGGAGGCGG
AGGCCCTCAGCCAGGCCAAGATGAAGAATCGGGTAATGCACCTGGAGGCG
GCCCTGGTGAGGTCGGAGCTGGACCTGTGCCGGGCGAGGACCGAGCTCGA
GGCGAACCGGCGGGAGGCGGAGGCCCTCAGCCAGGCCAAGGACGCTGCGA
CCGATCGACAAGACCGCCACCCTGTGGTGCCTGGCGACGTCCCGGCTCTG
TACCACGCTCTGGAAGGGTCAGTCGTTCTCTTACAGGACGCTGCGACCGA
TCGACAAGACCGCCACCCTGTGGTGCCTGGCGACGTCCCGGCTCTGTACC
ACGCTCTGGAAGGGTCAGTCGTTCTCTTACAGATCGCCTCGGAGAAGATG
CTTCGCCTGGAGCACACCATCGCCAAGCACCGGGAGGCGATGCCGAGGCA
CCTCTATAGGGAGCTGCAGGACTGCGTTACTCAGGACGCGATGCTGCTGT
CCCCTCTCCCGCGCCGTCGCCGGCAGCACGGCCACCACCACCTCCACCAC
CAGCGTTAAATCGCCTCGGAGAAGATGCTTCGCCTGGAGCACACCATCGC
CAAGCACCGGGAGGCGATGCCGAGGCACCTCTATAGGGAGCTGCAGGACT
GCGTTACTCAGGACGCGATGCTGCTGTCCCCTCTCCCGCGCCGTCGCCGG
CAGCACGGCCACCACCACCTCCACCACCAGCGTTAA
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