mRNA_Ecto-sp9_F_contig9243.17411.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9243.17411.1
Unique NamemRNA_Ecto-sp9_F_contig9243.17411.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9243.17411.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9243contigEcto-sp9_F_contig9243:1866..2536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size671
Cds size336
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931000.380123-UTR-Ecto-sp9_F_contig9243:1865..22001622931000.380123-UTR-Ecto-sp9_F_contig9243:1865..2200Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9243 1866..2200 +
1692278987.291046-UTR-Ecto-sp9_F_contig9243:1865..22001692278987.291046-UTR-Ecto-sp9_F_contig9243:1865..2200Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9243 1866..2200 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931000.4199665-CDS-Ecto-sp9_F_contig9243:2200..25361622931000.4199665-CDS-Ecto-sp9_F_contig9243:2200..2536Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9243 2201..2536 +
1692278987.3004284-CDS-Ecto-sp9_F_contig9243:2200..25361692278987.3004284-CDS-Ecto-sp9_F_contig9243:2200..2536Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9243 2201..2536 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9243.17411.1prot_Ecto-sp9_F_contig9243.17411.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9243 2201..2536 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9243.17411.1

>prot_Ecto-sp9_F_contig9243.17411.1 ID=prot_Ecto-sp9_F_contig9243.17411.1|Name=mRNA_Ecto-sp9_F_contig9243.17411.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=112bp
MKRHTHCVASVRLFQHVVPFCSHGSRTCCTHTKHTCLFFVLFPRDSQTMH
ARQHGKSESGNMKIFVSQYSLARMSKAKRTLNLQSLDTKICIICEQIICT
HPPHDTIKIVL*
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mRNA from alignment at Ecto-sp9_F_contig9243:1866..2536+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9243.17411.1 ID=mRNA_Ecto-sp9_F_contig9243.17411.1|Name=mRNA_Ecto-sp9_F_contig9243.17411.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=671bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9243:1866..2536+ (Ectocarpus species9 EcSCA_722f female)
ATCAGCTTCAGACAGGCAACGCGGACGATGCTTTCTCGTTGCGTTGATAC
GTCACAATCCATCTACAATAACAATATGCCTTCGGCTACGCACGCGTACC
GCCACAGAAATCCCAACTTCACACACAAAACAAGAACAGATCGATTCAAG
CAATTGCCTCGAACCTCGAAACCACCGAGAAAACAAAAACTCTACGAAGA
GAGAAGAGAGTCACGTGCAAAAAGGGGTGTATCTCGCGGCCTCCTGTGTT
TTCTCACCCCACGTTTCTCGCCATACAGAATGAAGGAATGAAGTAGTTGC
CGTGTTCTCGTTGGTCAGCCAGTTGCGCCGGCAAAATGAAAAGACACACG
CACTGTGTTGCATCGGTCCGCCTCTTCCAGCACGTTGTCCCCTTTTGCTC
GCACGGTTCAAGAACATGTTGTACCCACACAAAACACACTTGTCTGTTTT
TTGTTTTATTTCCAAGAGACAGCCAAACTATGCATGCTCGTCAGCACGGC
AAGAGTGAAAGTGGGAACATGAAAATATTTGTGAGCCAATATTCACTCGC
TCGCATGAGCAAAGCGAAGCGAACCTTGAATCTCCAATCGCTTGACACGA
AAATCTGTATCATTTGCGAGCAAATCATATGCACTCACCCACCACACGAC
ACGATTAAAATTGTACTGTAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9243:1866..2536+

>mRNA_Ecto-sp9_F_contig9243.17411.1 ID=mRNA_Ecto-sp9_F_contig9243.17411.1|Name=mRNA_Ecto-sp9_F_contig9243.17411.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=672bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9243:1866..2536+ (Ectocarpus species9 EcSCA_722f female)
ATGAAAAGACACACGCACTGTGTTGCATCGGTCCGCCTCTTCCAGCACGT
TGTCCCCTTTTGCTCGCACGGTTCAAGAACATGTTGTACCCACACAAAAC
ACACTTGTCTGTTTTTTGTTTTATTTCCAAGAGACAGCCAAACTATGCAT
GCTCGTCAGCACGGCAAGAGTGAAAGTGGGAACATGAAAATATTTGTGAG
CCAATATTCACTCGCTCGCATGAGCAAAGCGAAGCGAACCTTGAATCTCC
AATCGCTTGACACGAAAATCTGTATCATTTGCGAGCAAATCATATGCACT
CACCCACCACACGACACGATTAAAATTGTACTGTAGATGAAAAGACACAC
GCACTGTGTTGCATCGGTCCGCCTCTTCCAGCACGTTGTCCCCTTTTGCT
CGCACGGTTCAAGAACATGTTGTACCCACACAAAACACACTTGTCTGTTT
TTTGTTTTATTTCCAAGAGACAGCCAAACTATGCATGCTCGTCAGCACGG
CAAGAGTGAAAGTGGGAACATGAAAATATTTGTGAGCCAATATTCACTCG
CTCGCATGAGCAAAGCGAAGCGAACCTTGAATCTCCAATCGCTTGACACG
AAAATCTGTATCATTTGCGAGCAAATCATATGCACTCACCCACCACACGA
CACGATTAAAATTGTACTGTAG
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