mRNA_Ecto-sp9_F_contig9240.17410.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9240.17410.1
Unique NamemRNA_Ecto-sp9_F_contig9240.17410.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9240.17410.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU64_ECTSI)

HSP 1 Score: 187 bits (474), Expect = 2.060e-56
Identity = 122/220 (55.45%), Postives = 123/220 (55.91%), Query Frame = 1 
Query:  205 GNQGGGVVRAGVGACTGYVRTTRSRGVPPGADMGGVEHLRSRKRRSGSISAGASFSRTARTPSVLPAEGTLAGMDTASSSSAAAPFTRRLRRVRVGHATVNVTSAATTAAGQQRAATCGVERTTRDLGVVSPSPLGLPRTSSTLARLMQLGGGKEAPGFDAAVRASAASSDGNTGGVEVAAVADAVDAGDDDKSSSSDGGAAHEDLSAWLHSTHDWWTSD 864
            GN  GGVVRAGVGACTG+VRTTRSRGVPPGA MGGVEHLRSRKRRSGSISAGASFS                                                                                         RLMQ GGGKEAPGFDAAVRASAASSDGNTGGVEVAAVADAVDAGDDDK    DGGAAHEDLSAWLHSTHDWWTSD
Sbjct:    2 GNPDGGVVRAGVGACTGHVRTTRSRGVPPGAGMGGVEHLRSRKRRSGSISAGASFS-----------------------------------------------------------------------------------------RLMQQGGGKEAPGFDAAVRASAASSDGNTGGVEVAAVADAVDAGDDDKXXXXDGGAAHEDLSAWLHSTHDWWTSD 132
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BLAST of mRNA_Ecto-sp9_F_contig9240.17410.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGC1_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 1.260e-18
Identity = 51/75 (68.00%), Postives = 53/75 (70.67%), Query Frame = 1 
Query:  646 MQLGGGKEAPGFDAAVRASAASSDGNT--GGVEVAAVADAVDAGDDDKSSSSDGGAAHEDLSAWLHSTHDWWTSD 864
            MQ GGGK+APGFDAAVRASAASSDGN            DA+D GD       D GAAHEDLSAWLHSTHDWWTSD
Sbjct:    1 MQEGGGKKAPGFDAAVRASAASSDGNARXXXXXXXXXPDAIDVGDXXXXXXXDEGAAHEDLSAWLHSTHDWWTSD 75
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9240.17410.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.060e-5655.45protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.260e-1868.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9240contigEcto-sp9_F_contig9240:662..1816 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_000390.1
Exons2
Model size867
Cds size867
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931000.2820008-CDS-Ecto-sp9_F_contig9240:661..11541622931000.2820008-CDS-Ecto-sp9_F_contig9240:661..1154Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9240 662..1154 -
1692278987.2725558-CDS-Ecto-sp9_F_contig9240:661..11541692278987.2725558-CDS-Ecto-sp9_F_contig9240:661..1154Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9240 662..1154 -
1622931000.3151114-CDS-Ecto-sp9_F_contig9240:1442..18161622931000.3151114-CDS-Ecto-sp9_F_contig9240:1442..1816Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9240 1443..1816 -
1692278987.2815073-CDS-Ecto-sp9_F_contig9240:1442..18161692278987.2815073-CDS-Ecto-sp9_F_contig9240:1442..1816Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9240 1443..1816 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9240.17410.1prot_Ecto-sp9_F_contig9240.17410.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9240 662..1816 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9240.17410.1

>prot_Ecto-sp9_F_contig9240.17410.1 ID=prot_Ecto-sp9_F_contig9240.17410.1|Name=mRNA_Ecto-sp9_F_contig9240.17410.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=289bp
MDSLADGVSSLGVASPDAAAAGSSSSSGGWNQAEAPRTPYGCTWRRDSFG
GQTDGSSQTLCPVSALVRGNQGGGVVRAGVGACTGYVRTTRSRGVPPGAD
MGGVEHLRSRKRRSGSISAGASFSRTARTPSVLPAEGTLAGMDTASSSSA
AAPFTRRLRRVRVGHATVNVTSAATTAAGQQRAATCGVERTTRDLGVVSP
SPLGLPRTSSTLARLMQLGGGKEAPGFDAAVRASAASSDGNTGGVEVAAV
ADAVDAGDDDKSSSSDGGAAHEDLSAWLHSTHDWWTSD*
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mRNA from alignment at Ecto-sp9_F_contig9240:662..1816-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9240.17410.1 ID=mRNA_Ecto-sp9_F_contig9240.17410.1|Name=mRNA_Ecto-sp9_F_contig9240.17410.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1155bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9240:662..1816- (Ectocarpus species9 EcSCA_722f female)
ATGGATTCCTTGGCCGACGGGGTTAGCAGTCTAGGGGTCGCTTCCCCCGA
TGCTGCTGCTGCCGGTAGTAGCAGCAGCAGTGGCGGTTGGAATCAGGCTG
AAGCACCAAGGACGCCGTATGGGTGCACATGGCGGCGAGATAGCTTCGGC
GGTCAGACGGACGGCTCTTCTCAGACGCTGTGTCCGGTGTCAGCTCTCGT
CAGGGGCAACCAGGGCGGCGGCGTTGTGAGGGCCGGCGTGGGCGCTTGCA
CCGGGTACGTTAGGACTACGAGGTCTCGCGGGGTGCCGCCTGGTGCTGAC
ATGGGAGGCGTCGAGCATTTACGGTCGAGAAAGCGCAGGAGCGGCTCCAT
CTCGGCGGGGGCATCGTTTTCCCGGTGAGAGAGGTCTAAAATAGATTATG
CACTGTAATCGTTGCGGCAGCAAGCAATCTGTACATGTATGGTTCTTTCC
GCTGTTTTCCGTGCCCGTATTGCTTGCGAGGTAGAGAGGCCGCCGGCGTC
TATGTCTGTTGGCCCCCTTTTACGAAGCAAAGGATTCCTGAAACCTGTGT
GTTTCTGCGTGTGAAAATTTAGGCGCTATTTCGTAGAGACTCCTGTCTGT
GCAAAGGAACACAACAACTCGTTACAGTGCTGCTTTCAAAAACTCTTTTT
CTTGTCCCCTAGGACCGCCCGAACACCTTCAGTGCTACCAGCCGAAGGAA
CCTTGGCCGGCATGGACACAGCATCATCGTCATCAGCAGCAGCCCCGTTT
ACGCGACGGCTGAGGCGCGTCCGTGTCGGGCACGCCACCGTCAACGTCAC
CAGCGCTGCCACAACCGCTGCTGGCCAGCAGAGGGCAGCCACCTGCGGCG
TGGAGAGAACAACGAGAGACCTCGGCGTGGTTTCTCCTTCGCCGCTGGGC
CTTCCCCGTACCTCCTCCACTCTCGCCAGGTTGATGCAGCTGGGTGGCGG
GAAAGAAGCGCCAGGATTTGACGCGGCTGTCCGTGCCTCTGCTGCATCTT
CTGACGGCAACACCGGCGGGGTAGAGGTGGCGGCGGTGGCGGATGCGGTA
GACGCTGGCGACGACGACAAGAGCAGCAGCAGCGACGGGGGTGCCGCTCA
CGAAGACTTGTCGGCGTGGCTACACAGCACGCATGACTGGTGGACATCTG
ACTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9240:662..1816-

>mRNA_Ecto-sp9_F_contig9240.17410.1 ID=mRNA_Ecto-sp9_F_contig9240.17410.1|Name=mRNA_Ecto-sp9_F_contig9240.17410.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1734bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9240:662..1816- (Ectocarpus species9 EcSCA_722f female)
ATGGATTCCTTGGCCGACGGGGTTAGCAGTCTAGGGGTCGCTTCCCCCGA
TGCTGCTGCTGCCGGTAGTAGCAGCAGCAGTGGCGGTTGGAATCAGGCTG
AAGCACCAAGGACGCCGTATGGGTGCACATGGCGGCGAGATAGCTTCGGC
GGTCAGACGGACGGCTCTTCTCAGACGCTGTGTCCGGTGTCAGCTCTCGT
CAGGGGCAACCAGGGCGGCGGCGTTGTGAGGGCCGGCGTGGGCGCTTGCA
CCGGGTACGTTAGGACTACGAGGTCTCGCGGGGTGCCGCCTGGTGCTGAC
ATGGGAGGCGTCGAGCATTTACGGTCGAGAAAGCGCAGGAGCGGCTCCAT
CTCGGCGGGGGCATCGTTTTCCCGATGGATTCCTTGGCCGACGGGGTTAG
CAGTCTAGGGGTCGCTTCCCCCGATGCTGCTGCTGCCGGTAGTAGCAGCA
GCAGTGGCGGTTGGAATCAGGCTGAAGCACCAAGGACGCCGTATGGGTGC
ACATGGCGGCGAGATAGCTTCGGCGGTCAGACGGACGGCTCTTCTCAGAC
GCTGTGTCCGGTGTCAGCTCTCGTCAGGGGCAACCAGGGCGGCGGCGTTG
TGAGGGCCGGCGTGGGCGCTTGCACCGGGTACGTTAGGACTACGAGGTCT
CGCGGGGTGCCGCCTGGTGCTGACATGGGAGGCGTCGAGCATTTACGGTC
GAGAAAGCGCAGGAGCGGCTCCATCTCGGCGGGGGCATCGTTTTCCCGGA
CCGCCCGAACACCTTCAGTGCTACCAGCCGAAGGAACCTTGGCCGGCATG
GACACAGCATCATCGTCATCAGCAGCAGCCCCGTTTACGCGACGGCTGAG
GCGCGTCCGTGTCGGGCACGCCACCGTCAACGTCACCAGCGCTGCCACAA
CCGCTGCTGGCCAGCAGAGGGCAGCCACCTGCGGCGTGGAGAGAACAACG
AGAGACCTCGGCGTGGTTTCTCCTTCGCCGCTGGGCCTTCCCCGTACCTC
CTCCACTCTCGCCAGGTTGATGCAGCTGGGTGGCGGGAAAGAAGCGCCAG
GATTTGACGCGGCTGTCCGTGCCTCTGCTGCATCTTCTGACGGCAACACC
GGCGGGGTAGAGGTGGCGGCGGTGGCGGATGCGGTAGACGCTGGCGACGA
CGACAAGAGCAGCAGCAGCGACGGGGGTGCCGCTCACGAAGACTTGTCGG
CGTGGCTACACAGCACGCATGACTGGTGGACATCTGACTGAGACCGCCCG
AACACCTTCAGTGCTACCAGCCGAAGGAACCTTGGCCGGCATGGACACAG
CATCATCGTCATCAGCAGCAGCCCCGTTTACGCGACGGCTGAGGCGCGTC
CGTGTCGGGCACGCCACCGTCAACGTCACCAGCGCTGCCACAACCGCTGC
TGGCCAGCAGAGGGCAGCCACCTGCGGCGTGGAGAGAACAACGAGAGACC
TCGGCGTGGTTTCTCCTTCGCCGCTGGGCCTTCCCCGTACCTCCTCCACT
CTCGCCAGGTTGATGCAGCTGGGTGGCGGGAAAGAAGCGCCAGGATTTGA
CGCGGCTGTCCGTGCCTCTGCTGCATCTTCTGACGGCAACACCGGCGGGG
TAGAGGTGGCGGCGGTGGCGGATGCGGTAGACGCTGGCGACGACGACAAG
AGCAGCAGCAGCGACGGGGGTGCCGCTCACGAAGACTTGTCGGCGTGGCT
ACACAGCACGCATGACTGGTGGACATCTGACTGA
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