mRNA_Ecto-sp9_F_contig9239.17406.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9239.17406.1
Unique NamemRNA_Ecto-sp9_F_contig9239.17406.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig9239.17406.1 vs.
Match: Queuine (tRNA-ribosyltransferase catalytic subunit 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNG2_ECTSI)

HSP 1 Score: 429 bits (1103), Expect = 9.260e-148
Identity = 209/215 (97.21%), Postives = 213/215 (99.07%), Query Frame = 1
Query:    1 MHRSYPNFSFTVESECQEETKARTGTLSTPHGVVQTPAFIFCATKAAIKGLSAETMKECGSQIILSNTYHLLVQPGGEMIEKMGGLQKATRWEGPMLTDSGGYQIFSMGHGSVGDEIKGRRGAEGGPEFAPSLVSISEKGARFKSYYDCSIKSLTPERSIEIQRQLGADLVVVLDECTPFHVDKDYTKSSMHRTHRWAMRSLREFIDGDDGTQAV 645
            MHRSYPNFSFTVESECQE TKARTGT+STPHG+VQTPAFIFCATKAAIKGLSAETMKECGSQIILSNTYHLLVQPGGEMIEKMGGLQKATRWEGPMLTDSGGYQIFSMGHGSVG+EIKGRRGAEGG EFAPSLVSISEKGARFKSYYDCSIKSLTPERSIEIQRQLGADLVVVLDECTPFHVDKDYTKSSMHRTHRWAMRSLREFIDGDDGTQA+
Sbjct:    1 MHRSYPNFSFTVESECQEGTKARTGTVSTPHGLVQTPAFIFCATKAAIKGLSAETMKECGSQIILSNTYHLLVQPGGEMIEKMGGLQKATRWEGPMLTDSGGYQIFSMGHGSVGNEIKGRRGAEGGAEFAPSLVSISEKGARFKSYYDCSIKSLTPERSIEIQRQLGADLVVVLDECTPFHVDKDYTKSSMHRTHRWAMRSLREFIDGDDGTQAL 215          
BLAST of mRNA_Ecto-sp9_F_contig9239.17406.1 vs.
Match: tRNA-guanine(15) (transglycosylase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCU6_9STRA)

HSP 1 Score: 301 bits (770), Expect = 1.240e-96
Identity = 147/211 (69.67%), Postives = 170/211 (80.57%), Query Frame = 1
Query:   10 SYPNFSFTVESECQEETKARTGTLSTPHGVVQTPAFIFCATKAAIKGLSAETMKECGSQIILSNTYHLLVQPGGEMIEKMGGLQKATRWEGPMLTDSGGYQIFSMGHGSVGDEIKGRRGAEGGPEFAPSLVSISEKGARFKSYYDCSIKSLTPERSIEIQRQLGADLVVVLDECTPFHVDKDYTKSSMHRTHRWAMRSLREFI-DGDDGTQ 639
            +YP F+F +    Q ++ ARTG L+TPHGVV+TPAFIFCATKAAIKGL+ E MK C +QI+LSNTYHL VQPG E I  MGGLQKAT W GPMLTDSGGYQIFSMGHGSV DEIKGRRGA       PSL+SI EKGARFKSY+D SIK L+PE SI+IQR LGADL++VLDECTPFHVDK+YT +S  R+HRWA+RSL EF+   ++G Q
Sbjct:   34 TYPGFNFEILHRDQGDSDARTGRLTTPHGVVETPAFIFCATKAAIKGLTMEQMKACDTQIVLSNTYHLHVQPGSEAIRDMGGLQKATNWRGPMLTDSGGYQIFSMGHGSVSDEIKGRRGATDANPNPPSLLSIGEKGARFKSYHDGSIKQLSPETSIQIQRDLGADLILVLDECTPFHVDKEYTAASTRRSHRWALRSLNEFVRTANEGAQ 244          
BLAST of mRNA_Ecto-sp9_F_contig9239.17406.1 vs.
Match: Queuine (tRNA-ribosyltransferase catalytic subunit 1 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UNN8_HETAK)

HSP 1 Score: 281 bits (720), Expect = 9.300e-90
Identity = 138/228 (60.53%), Postives = 171/228 (75.00%), Query Frame = 1
Query:   13 YPNFSFTVESECQEETKARTGTLSTPHGVVQTPAFIFCATKAAIKG-LSAETMKECGSQIILSNTYHLLVQPGGEMIEKMGGLQKATRWEGPMLTDSGGYQIFSMGHGSVGDEIKGRRGA----------------EGGPEFAPSLVSISEKGARFKSYYDCSIKSLTPERSIEIQRQLGADLVVVLDECTPFHVDKDYTKSSMHRTHRWAMRSLREFIDGDDGTQAV 645
            YPNFSF ++ + + ++KART T+STPHG +QTPAFIFCATKAAIKG +    +++  +QIILSNTYHL++QPGGE++ KMGGLQK + W GPMLTDSGGYQIFSMGHGSV  EIKG RG                 E G  + P+L+ ++E GARF+SY D SI  LTPE+SI+IQR LGADL+VVLDECT +H+ KD T  SM  +HRWA+RSL EFI GDDG+QA+
Sbjct:   49 YPNFSFKIKYQDKSDSKARTTTISTPHGEIQTPAFIFCATKAAIKGGIDPPKLRQADTQIILSNTYHLMLQPGGELVRKMGGLQKFSGWNGPMLTDSGGYQIFSMGHGSVSQEIKGNRGQKKSSKXXXXXXXXNDKEKGDRWVPTLLEVNENGARFRSYLDGSIWELTPEKSIQIQRDLGADLIVVLDECTAYHIGKDGTAESMRMSHRWALRSLAEFIRGDDGSQAL 276          
BLAST of mRNA_Ecto-sp9_F_contig9239.17406.1 vs.
Match: Queuine (tRNA-ribosyltransferase n=1 Tax=Caedimonas varicaedens TaxID=1629334 RepID=A0A0K8MFV7_9PROT)

HSP 1 Score: 271 bits (692), Expect = 7.540e-87
Identity = 133/211 (63.03%), Postives = 159/211 (75.36%), Query Frame = 1
Query:   13 YPNFSFTVESECQEETKARTGTLSTPHGVVQTPAFIFCATKAAIKGLSAETMKECGSQIILSNTYHLLVQPGGEMIEKMGGLQKATRWEGPMLTDSGGYQIFSMGHGSVGDEIKGRRGAEGGPEFAPSLVSISEKGARFKSYYDCSIKSLTPERSIEIQRQLGADLVVVLDECTPFHVDKDYTKSSMHRTHRWAMRSLREFIDGDDGTQAV 645
            YP FSF +       + AR G L TPHG ++TPAFIFCATK AIKG     MK  G+QIILSNTYH+++QPG E++EKMGGL K   W+GPMLTDSGGYQIFS+GHGSV  EIKG+R          +++ I+E+GARFKSY +  I  LTPERS+EIQRQLGADL+VVLDECTPFHVDK YT+ SMH +HRWA+RSL EF  G+DG QA+
Sbjct:    4 YPKFSFNITHR-SAVSGARAGLLKTPHGTIETPAFIFCATKGAIKGAFPREMKAAGTQIILSNTYHMMLQPGSELVEKMGGLHKFIGWDGPMLTDSGGYQIFSLGHGSVASEIKGKRVTH----RPKTMLKITEEGARFKSYINGQIFLLTPERSLEIQRQLGADLIVVLDECTPFHVDKSYTECSMHLSHRWALRSLAEFQRGNDGRQAL 209          
BLAST of mRNA_Ecto-sp9_F_contig9239.17406.1 vs.
Match: Queuine (tRNA-ribosyltransferase n=1 Tax=Candidatus Nucleicultrix amoebiphila FS5 TaxID=1414854 RepID=A0A1W6N307_9PROT)

HSP 1 Score: 266 bits (681), Expect = 3.550e-85
Identity = 132/215 (61.40%), Postives = 163/215 (75.81%), Query Frame = 1
Query:    1 MHRSYPNFSFTVESECQEETKARTGTLSTPHGVVQTPAFIFCATKAAIKGLSAETMKECGSQIILSNTYHLLVQPGGEMIEKMGGLQKATRWEGPMLTDSGGYQIFSMGHGSVGDEIKGRRGAEGGPEFAPSLVSISEKGARFKSYYDCSIKSLTPERSIEIQRQLGADLVVVLDECTPFHVDKDYTKSSMHRTHRWAMRSLREFIDGDDGTQAV 645
            M+  YP FSF  + +  + +KA+  TL TPHG V TP FIFCATKAAIKGL+   MKE G++IILSNTYHL++QPGG+ +E+ GGL +   W+GPMLTDSGG+QIFS+GHGSV +EIKG+R          +L+ ISE+GA FKSY D ++ +LTPE SIEIQRQLGADL+VVLDECTPFHVDK YT+ SMH THRW +RSL EF   + G QA+
Sbjct:    1 MNSLYPRFSFQTQYQ-DKFSKAKVATLVTPHGAVTTPNFIFCATKAAIKGLTPAQMKEAGTEIILSNTYHLMLQPGGKRVERRGGLHRFMGWDGPMLTDSGGFQIFSLGHGSVANEIKGKRLTH----RQKTLLKISEEGAVFKSYLDGALHTLTPESSIEIQRQLGADLIVVLDECTPFHVDKSYTEKSMHLTHRWGLRSLEEFKRTNSGQQAI 210          
BLAST of mRNA_Ecto-sp9_F_contig9239.17406.1 vs.
Match: Queuine (tRNA-ribosyltransferase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1F2Z8C4_9PROT)

HSP 1 Score: 266 bits (680), Expect = 4.600e-85
Identity = 132/215 (61.40%), Postives = 161/215 (74.88%), Query Frame = 1
Query:    1 MHRSYPNFSFTVESECQEETKARTGTLSTPHGVVQTPAFIFCATKAAIKGLSAETMKECGSQIILSNTYHLLVQPGGEMIEKMGGLQKATRWEGPMLTDSGGYQIFSMGHGSVGDEIKGRRGAEGGPEFAPSLVSISEKGARFKSYYDCSIKSLTPERSIEIQRQLGADLVVVLDECTPFHVDKDYTKSSMHRTHRWAMRSLREFIDGDDGTQAV 645
            M   YPNFSF  +S C     AR G + TPHGVV+TPAFIFCATK A+K ++   MK   +QIILSNTYH+++QPG E+++KMGGL K   WEGP+LTDSGG+QIFS+GHGSV DEIKG+R +  G     S+V I E+GA F+SY D     LTPE+SI++QRQLGADL+VVLDECTPFHVDK YTK SM  +HRWA+RSL EF  G+  TQA+
Sbjct:    1 MFPRYPNFSFKAQS-CANAGSARLGEIITPHGVVKTPAFIFCATKGAMKAIAMPEMKAADTQIILSNTYHMMLQPGSELVQKMGGLHKFCGWEGPLLTDSGGFQIFSLGHGSVSDEIKGKRSSGKGRS---SVVKIKEEGASFRSYIDGKKWLLTPEQSIQVQRQLGADLIVVLDECTPFHVDKAYTKRSMEMSHRWALRSLAEFDKGNTHTQAL 211          
BLAST of mRNA_Ecto-sp9_F_contig9239.17406.1 vs.
Match: Hypothetical (protein (Fragment) n=2 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SZ54_9STRA)

HSP 1 Score: 261 bits (667), Expect = 6.170e-85
Identity = 127/212 (59.91%), Postives = 163/212 (76.89%), Query Frame = 1
Query:   10 SYPNFSFTVESECQEETKARTGTLSTPHGVVQTPAFIFCATKAAIKGLSAETMKECGSQIILSNTYHLLVQPGGEMIEKMGGLQKATRWEGPMLTDSGGYQIFSMGHGSVGDEIKGRRGAEGGPEFAPSLVSISEKGARFKSYYDCSIKSLTPERSIEIQRQLGADLVVVLDECTPFHVDKDYTKSSMHRTHRWAMRSLREFIDGDDGTQAV 645
            +Y NF F +     + +KAR G L TPHG ++TP F+FCATKAA K ++ + +++ GSQIILSNTYHL++ PG E+I+KMGGLQK T W GPMLTDSGGYQIFSMG+GSV ++IKG+R A     + PSL+SI+E  A F+SY D SI  L+PE++I IQRQLGADL+VVLDECTPF+VDK+YT  SM R+HRWA R L+EF +  +G QA+
Sbjct:   23 NYDNFKFDIIHN-SKLSKARCGLLVTPHGNIETPNFVFCATKAAGKAITTKQLRDEGSQIILSNTYHLMLTPGSELIDKMGGLQKFTDWRGPMLTDSGGYQIFSMGYGSVSNDIKGKRNANATNTYKPSLISINENEAIFRSYVDGSIIKLSPEKAINIQRQLGADLIVVLDECTPFNVDKEYTAESMRRSHRWAYRCLKEFTNTHNGKQAL 233          
BLAST of mRNA_Ecto-sp9_F_contig9239.17406.1 vs.
Match: Queuine (tRNA-ribosyltransferase catalytic subunit 1 n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4GH72_9EUGL)

HSP 1 Score: 271 bits (694), Expect = 1.030e-84
Identity = 134/213 (62.91%), Postives = 165/213 (77.46%), Query Frame = 1
Query:   10 SYPNFSFTV-ESECQEETKARTGTLSTPHGVVQTPAFIFCATKAAIKGLSAETMKECGSQIILSNTYHLLVQPGGEMIEKMGGLQKATRWEGPMLTDSGGYQIFSMGHGSVGDEIKGRRGAEGGPEFAPSLVSISEKGARFKSYYDCSIKSLTPERSIEIQRQLGADLVVVLDECTPFHVDKDYTKSSMHRTHRWAMRSLREFIDGDDGTQAV 645
            +YPNF + V +S       AR G L+TPHG V+TPAFIFCATKA  KG++ E ++E GSQIILSNTYHL++QPG E+I+ +GGLQK T W GPMLTDSGGYQIFSMG GSV  EIKGR   E    + PS+  I+E GA F+SY+D S + LTPERSI +Q++LGADL++VLDECTPF+VDK+YT  S  R+HRWA+RSL EF+ GDDGTQA+
Sbjct:  200 TYPNFRWVVLQSGTAGAPAARLGLLTTPHGTVETPAFIFCATKACCKGMTPEMLREAGSQIILSNTYHLMLQPGSEIIKTLGGLQKTTGWRGPMLTDSGGYQIFSMGFGSVSSEIKGRHMTED-CGWKPSVQRINENGAEFRSYHDGSRQLLTPERSINVQQELGADLILVLDECTPFNVDKEYTAQSTRRSHRWAIRSLDEFVRGDDGTQAL 411          
BLAST of mRNA_Ecto-sp9_F_contig9239.17406.1 vs.
Match: Queuine (tRNA-ribosyltransferase n=2 Tax=Micavibrio aeruginosavorus TaxID=349221 RepID=G2KN59_MICAA)

HSP 1 Score: 265 bits (677), Expect = 1.130e-84
Identity = 126/212 (59.43%), Postives = 158/212 (74.53%), Query Frame = 1
Query:   10 SYPNFSFTVESECQEETKARTGTLSTPHGVVQTPAFIFCATKAAIKGLSAETMKECGSQIILSNTYHLLVQPGGEMIEKMGGLQKATRWEGPMLTDSGGYQIFSMGHGSVGDEIKGRRGAEGGPEFAPSLVSISEKGARFKSYYDCSIKSLTPERSIEIQRQLGADLVVVLDECTPFHVDKDYTKSSMHRTHRWAMRSLREFIDGDDGTQAV 645
            +YPNF+F V    Q  T+AR G L TPHG ++TP +IFC TK AIK LS   M+E G+ IIL NTYHL++QPG ++IE+MGGL +  RW+GPM+TDSGG+QIFSMGHG V DEIKGR   +G      SL+ ISE+GARFKSY+D SI +LTPE SI IQR++GADL+   DECT +HV++ YT+ SMHR+HRW  RS+ EF  G DG QA+
Sbjct:    3 TYPNFAFDVLHRDQNGTRARIGRLVTPHGTIETPNYIFCGTKGAIKNLSPMQMREAGADIILGNTYHLMIQPGADLIERMGGLHEFNRWDGPMMTDSGGFQIFSMGHGGVADEIKGRSNNKG---RGKSLLEISEEGARFKSYWDGSILNLTPEESISIQRKVGADLIYQFDECTAYHVERSYTEESMHRSHRWGDRSIAEFERGHDGRQAL 211          
BLAST of mRNA_Ecto-sp9_F_contig9239.17406.1 vs.
Match: Queuine (tRNA-ribosyltransferase n=1 Tax=Alphaproteobacteria bacterium 33-17 TaxID=1895704 RepID=A0A1Q3P6D1_9PROT)

HSP 1 Score: 264 bits (675), Expect = 2.690e-84
Identity = 131/211 (62.09%), Postives = 157/211 (74.41%), Query Frame = 1
Query:   13 YPNFSFTVESECQEETKARTGTLSTPHGVVQTPAFIFCATKAAIKGLSAETMKECGSQIILSNTYHLLVQPGGEMIEKMGGLQKATRWEGPMLTDSGGYQIFSMGHGSVGDEIKGRRGAEGGPEFAPSLVSISEKGARFKSYYDCSIKSLTPERSIEIQRQLGADLVVVLDECTPFHVDKDYTKSSMHRTHRWAMRSLREFIDGDDGTQAV 645
            YPNF F V      ++ ARTG L TPHGVV+TP FIFCATKA+IKG+  + M E  +QIILSNTYHL++QPG E+++K+GGL K   W GPM TDSGGYQIFS+GHGSV  EIKG+R          +L+ I+E+GARFKSY D S   LTPE+SI+IQR LGADL+VVLDECTPFHVDK YT  SM  +HRWA+RSL EF   DD +QA+
Sbjct:    2 YPNFKFEVTYN-DPDSSARTGLLHTPHGVVETPNFIFCATKASIKGVMPQDMLEANTQIILSNTYHLMLQPGSEVVKKLGGLHKMMGWNGPMFTDSGGYQIFSLGHGSVASEIKGKRNGN----RPKTLLKITEEGARFKSYVDGSYHMLTPEKSIQIQRDLGADLIVVLDECTPFHVDKAYTAKSMRMSHRWALRSLEEFKRTDDHSQAL 207          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9239.17406.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Queuine9.260e-14897.21tRNA-ribosyltransferase catalytic subunit 1 n=1 Ta... [more]
tRNA-guanine(15)1.240e-9669.67transglycosylase-like protein n=1 Tax=Tribonema mi... [more]
Queuine9.300e-9060.53tRNA-ribosyltransferase catalytic subunit 1 n=1 Ta... [more]
Queuine7.540e-8763.03tRNA-ribosyltransferase n=1 Tax=Caedimonas varicae... [more]
Queuine3.550e-8561.40tRNA-ribosyltransferase n=1 Tax=Candidatus Nucleic... [more]
Queuine4.600e-8561.40tRNA-ribosyltransferase n=2 Tax=Alphaproteobacteri... [more]
Hypothetical6.170e-8559.91protein (Fragment) n=2 Tax=Chromulina nebulosa Tax... [more]
Queuine1.030e-8462.91tRNA-ribosyltransferase catalytic subunit 1 n=1 Ta... [more]
Queuine1.130e-8459.43tRNA-ribosyltransferase n=2 Tax=Micavibrio aerugin... [more]
Queuine2.690e-8462.09tRNA-ribosyltransferase n=1 Tax=Alphaproteobacteri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9239contigEcto-sp9_F_contig9239:110..3274 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score429.9
Seed ortholog evalue7.1e-118
Seed eggNOG ortholog2880.D7FNG2
KEGG rclassRC00063
KEGG koko:K00773
KEGG ReactionR03789,R10209
EggNOG free text desc.tRNA-guanine transglycosylation
EggNOG OGsCOG0343@1,KOG3908@2759
EC2.4.2.29
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptiontRNA-guanine(15) transglycosylase-like
Ec32 orthologEc-01_005570.1
Exons6
Model size645
Cds size645
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930999.2608755-CDS-Ecto-sp9_F_contig9239:109..2311622930999.2608755-CDS-Ecto-sp9_F_contig9239:109..231Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9239 110..231 -
1692278986.7109084-CDS-Ecto-sp9_F_contig9239:109..2311692278986.7109084-CDS-Ecto-sp9_F_contig9239:109..231Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9239 110..231 -
1622930999.2803466-CDS-Ecto-sp9_F_contig9239:909..10441622930999.2803466-CDS-Ecto-sp9_F_contig9239:909..1044Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9239 910..1044 -
1692278986.7252038-CDS-Ecto-sp9_F_contig9239:909..10441692278986.7252038-CDS-Ecto-sp9_F_contig9239:909..1044Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9239 910..1044 -
1622930999.2926235-CDS-Ecto-sp9_F_contig9239:1403..15451622930999.2926235-CDS-Ecto-sp9_F_contig9239:1403..1545Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9239 1404..1545 -
1692278986.7349775-CDS-Ecto-sp9_F_contig9239:1403..15451692278986.7349775-CDS-Ecto-sp9_F_contig9239:1403..1545Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9239 1404..1545 -
1622930999.3062997-CDS-Ecto-sp9_F_contig9239:2228..23091622930999.3062997-CDS-Ecto-sp9_F_contig9239:2228..2309Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9239 2229..2309 -
1692278986.74446-CDS-Ecto-sp9_F_contig9239:2228..23091692278986.74446-CDS-Ecto-sp9_F_contig9239:2228..2309Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9239 2229..2309 -
1622930999.3221848-CDS-Ecto-sp9_F_contig9239:2734..27941622930999.3221848-CDS-Ecto-sp9_F_contig9239:2734..2794Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9239 2735..2794 -
1692278986.7568939-CDS-Ecto-sp9_F_contig9239:2734..27941692278986.7568939-CDS-Ecto-sp9_F_contig9239:2734..2794Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9239 2735..2794 -
1622930999.3362448-CDS-Ecto-sp9_F_contig9239:3169..32741622930999.3362448-CDS-Ecto-sp9_F_contig9239:3169..3274Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9239 3170..3274 -
1692278986.7673213-CDS-Ecto-sp9_F_contig9239:3169..32741692278986.7673213-CDS-Ecto-sp9_F_contig9239:3169..3274Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9239 3170..3274 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9239.17406.1prot_Ecto-sp9_F_contig9239.17406.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9239 110..3274 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9239.17406.1

>prot_Ecto-sp9_F_contig9239.17406.1 ID=prot_Ecto-sp9_F_contig9239.17406.1|Name=mRNA_Ecto-sp9_F_contig9239.17406.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=215bp
MHRSYPNFSFTVESECQEETKARTGTLSTPHGVVQTPAFIFCATKAAIKG
LSAETMKECGSQIILSNTYHLLVQPGGEMIEKMGGLQKATRWEGPMLTDS
GGYQIFSMGHGSVGDEIKGRRGAEGGPEFAPSLVSISEKGARFKSYYDCS
IKSLTPERSIEIQRQLGADLVVVLDECTPFHVDKDYTKSSMHRTHRWAMR
SLREFIDGDDGTQAV
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mRNA from alignment at Ecto-sp9_F_contig9239:110..3274-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9239.17406.1 ID=mRNA_Ecto-sp9_F_contig9239.17406.1|Name=mRNA_Ecto-sp9_F_contig9239.17406.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3165bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9239:110..3274- (Ectocarpus species9 EcSCA_722f female)
ATGCATCGCAGCTACCCGAACTTTTCTTTCACCGTGGAAAGCGAGTGCCA AGAGGAAACAAAAGCAAGAACGGGGACTCTGAGCACACCACACGGAGTTG TTCAGGTACGTGCACGTATCTGTCATAACTTTTGACCCATGATGCGAAGA AAATGCTGCTCGAGTTGAGGCTGCAGGCTACGGGGGAGACGCAGGATACG TGTTGCTATGCAACGTCTATGCTGTTGTAGATTCGATTACCTAGACAGCA AAGACAAGCGTGCATGGTGTCCGGCCGCCGAGTTCAAGCGTTGACGTGAA CGTGTGCGATGTGGCTTTGGGTATCGTCGGTGGTGCGTACTTCCATTCAG ACAGCTTGGAACGCGGTTGGCTTGCTATCCTGAGAGTGTGTAGGCGTGAC GCGTCCCCGTTTTGCCGTCGGCGTCTTGCTGCTGCTGCTGCTGCTGCTGC TGCTGCTGCTGTTGGTGTTGCACTCTTCAGACCCCGGCGTTCATCTTCTG CGCGACCAAGGCGGCAATCAAGGGGCTCTCCGCTGAGACTGTGAGGAAGG GATAACTGACCGCTTATTTCGTCATCAGAAGAAGGCCGAGCGTGTGTGTT TGTTTGGCGATGAGCCAGCCGTGTCTCCCGATTTTTGAGTCATGAGTCAG GACTTTTGTCTGAACATTTTTCGCTTCTTGTTGTTGTTCTCTGTGTCGTT GTCTTCAGCAGTGTGTGCTTACGAGCTCCTGTGGTGCGTAGTATCCTTTT CGTTATACCTCCTTCCTTTTCATGCTTTTGTTGTCGTTTTGATGATCTCG TGGGAATTGCTCTAGGCCCTTGTCCCCCCTCCCCCTGCCCTACATAGCTC AACAATCGGGGCGTCCATAACCTCGACATGGTCTTCTTTATGTATCCCTC CTGATGATTTCGCTGCCGCTGCTGCTGTTGTTGTTGTTTCTGTCCGTGTT TGACTCTGGTGGCAGATGAAGGAATGCGGCAGCCAGATAATCTTGAGCAA CACCTACCACCTCCTCGTCCAGCCCGGGGGCGAGATGATCGAAAAGGTAC GTACGTAATCAGAAACCCATCCACTTTTAGGAAGGCTTTCACAGGGACCA AACCAGGGCCCCAAGGCAGCGGCTCTGAGACTGCCATACGATGCCTCAAT GTGAGGTACTACCGTAAAACCCATCCATCCCCTCGGAAGGCTTGGCATAG ATGCAACGATGCGACCGCGATGACGTTGACCACGTCCTCTTGCGTCGCCC CCGGGAGGCAAGCCACCTAACTCCTGGAGGGGAGCCTTGTAGTTGTATAC CACCTGCACTCCCGTGTCTTGGTCTTGGCTTGTTGGGGTTGACGTTCGAA TTAAATCCCACAAAGGGTAACGCCCATCTGCCCATCTGCATAGAGGAGAG GAGCTAAACGTGATAAGACACAAATCCCTTGTTCGCCGAGAACCCCGCTT TCCCTTGCTCCCCTTTCGAACTCGATGGCCGGTCACGTCACGCACTTCAC TGCCATATACTTTTGCTTCGTATTACATGTACAACAAATATATGTATATA TATTTTTTTTATTGGCACTAAAATGGAGAGGGGCGTTGTCGACAGGTGTT GACCGACCTTGCCTGCCTCTTTTCCGCATTGCATGTGTATAGACGCTCAG CCTTGCAGGCGCTTTACAACCCGGGTTGCGCACGAATGAACGACAAACAT GAATTGGCCAACGTGACGACGCGAAACAGATGGGAGGCCTGCAGAAGGCA ACCCGCTGGGAGGGACCCATGCTAACCGACTCCGGGGGGTACCAGATCTT CAGCATGGGGCACGGGTCCGTGGGAGATGAGATCAAGGGCCGGCGCGGCG CGGAAGGAGGCCCGGAGTTTGGTGAGTGAGAGACGGGCGGAGTCGTGACT GCTGCTGTGGCCGGCCCTGCCTCTCCCTCCGTTCTTACGCACGAGAGTGC TTTACCGTTGCCGCCTCGAGGAGGAAGCGTTGTGGTTGGTGGTGGTGGTG GAGTTGGAGTTGGTGGTATTGCTCTTGTCGATACTGGTGGCGAAACCTTC TTAAACCTCCGTGTAAGCTCCCCCGCTCCATCCCCTTACCCCCCCCCCCC TCCCCCTCCCTTGTTTGTTTGCTTCAGTACTGCGTTGGCCCCCGCTCCTT TGTCCAGTCGTAAATTTCGTGGTTACTATTGTTGTTGTTGTTGTTGTTGT TGTTGTTGCTGCTGTTGGAATCGTGGGCAGCGCCTTCTCTGGTCAGCATT TCCGAAAAGGGTGCGCGATTCAAGAGCTACTACGACTGCTCCATCAAGTC CCTCACCCCTGAGCGGTCTATCGAGATTCAGAGGCAACTGGGGGCCGACC TTGTGGTGGTATTAGGTGAGACGGGGGGGGAGGGGGGGTCCACTGGTCAC TGCTCTTGATATGGTTTGGTCGCCCTTTTTGATTGTGCATCTGTGTTTCC TGCATGACAGCGGTCGTTCGGCCATTGGTCGCCAAAGTATCCTGATTCGA TTCGAAGTGCGAACGGGCGCGGGGGGGGTAAGGGGGGCATGATGAAAATT CAACGCTGTGTAACGATACTTGTACGTTTTGACGTCTTGTGTCATGCGCG GCGAGGGTGTAGAGTACGCTCGTTGTTGGCAGCTCAGGCAAAGACACCGC GCTCGATAAGCCTGTCAACAAGCCCATTCGCACGCTCAGAACGTCCTGGA TATCAACAAGAAGTTATTCTTGCAGCCCTGCGCCCCTCGCCGCCCCCCGT TCTGCGTGTGAGTTGCTACGTACCTAAGTGTGCCGAGTACGCCCTGCTCC TGCCATCGCCACCACCGCGGAGCCCCCCGTTTCGGGTACCAAACAACATG GCAATCTAAGACTTTTCACGTCACCGAAAGTACGCTATTCAGGAAACAAC ACTGCCACTGCTATGAACCACGACAGCGATGTTTGTTTTATTTTATTTTT CTTGGCGTCCGTTCTCGTTCTCGTTCTCGTTCTCGTTCTCGTTCTCGTTC TCGTTCTCGTTCTGTTCTGTTCTGATCTGATCTGTTCTGGCAGACGAGTG CACCCCGTTCCACGTGGACAAGGACTACACCAAGTCCTCCATGCACCGCA CGCACCGGTGGGCGATGCGCAGCCTGAGGGAGTTCATCGACGGGGACGAT GGCACTCAAGCGGTG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9239:110..3274-

>mRNA_Ecto-sp9_F_contig9239.17406.1 ID=mRNA_Ecto-sp9_F_contig9239.17406.1|Name=mRNA_Ecto-sp9_F_contig9239.17406.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1290bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9239:110..3274- (Ectocarpus species9 EcSCA_722f female)
ATGCATCGCAGCTACCCGAACTTTTCTTTCACCGTGGAAAGCGAGTGCCA
AGAGGAAACAAAAGCAAGAACGGGGACTCTGAGCACACCACACGGAGTTG
TTCAGATGCATCGCAGCTACCCGAACTTTTCTTTCACCGTGGAAAGCGAG
TGCCAAGAGGAAACAAAAGCAAGAACGGGGACTCTGAGCACACCACACGG
AGTTGTTCAGACCCCGGCGTTCATCTTCTGCGCGACCAAGGCGGCAATCA
AGGGGCTCTCCGCTGAGACTACCCCGGCGTTCATCTTCTGCGCGACCAAG
GCGGCAATCAAGGGGCTCTCCGCTGAGACTATGAAGGAATGCGGCAGCCA
GATAATCTTGAGCAACACCTACCACCTCCTCGTCCAGCCCGGGGGCGAGA
TGATCGAAAAGATGAAGGAATGCGGCAGCCAGATAATCTTGAGCAACACC
TACCACCTCCTCGTCCAGCCCGGGGGCGAGATGATCGAAAAGATGGGAGG
CCTGCAGAAGGCAACCCGCTGGGAGGGACCCATGCTAACCGACTCCGGGG
GGTACCAGATCTTCAGCATGGGGCACGGGTCCGTGGGAGATGAGATCAAG
GGCCGGCGCGGCGCGGAAGGAGGCCCGGAGTTTGATGGGAGGCCTGCAGA
AGGCAACCCGCTGGGAGGGACCCATGCTAACCGACTCCGGGGGGTACCAG
ATCTTCAGCATGGGGCACGGGTCCGTGGGAGATGAGATCAAGGGCCGGCG
CGGCGCGGAAGGAGGCCCGGAGTTTGCGCCTTCTCTGGTCAGCATTTCCG
AAAAGGGTGCGCGATTCAAGAGCTACTACGACTGCTCCATCAAGTCCCTC
ACCCCTGAGCGGTCTATCGAGATTCAGAGGCAACTGGGGGCCGACCTTGT
GGTGGTATTAGCGCCTTCTCTGGTCAGCATTTCCGAAAAGGGTGCGCGAT
TCAAGAGCTACTACGACTGCTCCATCAAGTCCCTCACCCCTGAGCGGTCT
ATCGAGATTCAGAGGCAACTGGGGGCCGACCTTGTGGTGGTATTAGACGA
GTGCACCCCGTTCCACGTGGACAAGGACTACACCAAGTCCTCCATGCACC
GCACGCACCGGTGGGCGATGCGCAGCCTGAGGGAGTTCATCGACGGGGAC
GATGGCACTCAAGCGGTGACGAGTGCACCCCGTTCCACGTGGACAAGGAC
TACACCAAGTCCTCCATGCACCGCACGCACCGGTGGGCGATGCGCAGCCT
GAGGGAGTTCATCGACGGGGACGATGGCACTCAAGCGGTG
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