mRNA_Ecto-sp9_F_contig9226.17400.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9226.17400.1
Unique NamemRNA_Ecto-sp9_F_contig9226.17400.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9226.17400.1 vs.
Match: Proteasome (subunit beta n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYM7_ECTSI)

HSP 1 Score: 395 bits (1016), Expect = 2.020e-138
Identity = 201/202 (99.50%), Postives = 201/202 (99.50%), Query Frame = 1 
Query:    1 TTLAIAGADYVVVAADTRMSTGYSIMSRDQTKLHQLTSKCVIASAGCKTDVTTLWKELDVSMTMYDHNMEKEMATPAVAQMLANTLYYRRFFPYYSFNVLCGLDEQGKGSVFSYDAIGSFERVPYSASGSGQTYIIPLLDNLVEFKTRKDEKPARSAAETVELVKELFVTAGERDIYTGDAVEITIISKDGTSTQMFPLKKD 606
            TTLAIAGADYVVVAADTRMSTGYSIMSRDQTKLHQLTSKCVIASAGCKTDVTTLWKELDVSMTMYDHNMEKEMATPAVAQMLANTLYYRRFFPYYSFNVLCGLDEQGKGSVFSYDAIGSFERVPYSASGSGQTYIIPLLDNLVEFKTRKDEKPARSAAETVELVKEL VTAGERDIYTGDAVEITIISKDGTSTQMFPLKKD
Sbjct:   50 TTLAIAGADYVVVAADTRMSTGYSIMSRDQTKLHQLTSKCVIASAGCKTDVTTLWKELDVSMTMYDHNMEKEMATPAVAQMLANTLYYRRFFPYYSFNVLCGLDEQGKGSVFSYDAIGSFERVPYSASGSGQTYIIPLLDNLVEFKTRKDEKPARSAAETVELVKELLVTAGERDIYTGDAVEITIISKDGTSTQMFPLKKD 251
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9226.17400.1 vs.
Match: Proteasome (subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC48_9STRA)

HSP 1 Score: 322 bits (826), Expect = 2.000e-109
Identity = 159/202 (78.71%), Postives = 179/202 (88.61%), Query Frame = 1 
Query:    1 TTLAIAGADYVVVAADTRMSTGYSIMSRDQTKLHQLTSKCVIASAGCKTDVTTLWKELDVSMTMYDHNMEKEMATPAVAQMLANTLYYRRFFPYYSFNVLCGLDEQGKGSVFSYDAIGSFERVPYSASGSGQTYIIPLLDNLVEFKTRKDEKPARSAAETVELVKELFVTAGERDIYTGDAVEITIISKDGTSTQMFPLKKD 606
            TTLA+AG DYVV+ ADTRMSTGY IMSRDQTKLHQLTSKCVIASAGC++DVTTLWK LD  M MY HN+ K+M+TPA AQMLANTLYYRRFFPYYSFNVL GLD +GKG+VFSYDAIGS+ERV YSASGSGQ+YIIP++DNLV FKTR D KP R+A ETV+LVK++F+TAGERDIYTGDAVEI II+  GT TQ+F LKKD
Sbjct:   54 TTLAVAGEDYVVIGADTRMSTGYQIMSRDQTKLHQLTSKCVIASAGCRSDVTTLWKMLDHRMVMYKHNIGKDMSTPAAAQMLANTLYYRRFFPYYSFNVLAGLDAEGKGAVFSYDAIGSYERVEYSASGSGQSYIIPVMDNLVGFKTRLDPKPVRTAEETVDLVKDVFITAGERDIYTGDAVEICIITATGTQTQIFNLKKD 255
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9226.17400.1 vs.
Match: Proteasome (subunit beta n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWL8_9STRA)

HSP 1 Score: 287 bits (735), Expect = 1.390e-95
Identity = 139/202 (68.81%), Postives = 171/202 (84.65%), Query Frame = 1 
Query:    1 TTLAIAGADYVVVAADTRMSTGYSIMSRDQTKLHQLTSKCVIASAGCKTDVTTLWKELDVSMTMYDHNMEKEMATPAVAQMLANTLYYRRFFPYYSFNVLCGLDEQGKGSVFSYDAIGSFERVPYSASGSGQTYIIPLLDNLVEFKTRKDEKPARSAAETVELVKELFVTAGERDIYTGDAVEITIISKDGTSTQMFPLKKD 606
            TTLAIAG+++VVVAADTRMS GY+I+SR+++KLH+LT KC++A+AGC+TDVTTL   LD+ M MY HN+  EM T AVAQMLANTLYYRRFFPYYSFNVLCG+D++GKG V+SYDAIGSFE VPYSASGSGQ+YIIPL+D+ V FK R   KP  +  ETV++VK  FVTAGERDIYTGD VEI +++ +G  +++FPLKKD
Sbjct:   54 TTLAIAGSNFVVVAADTRMSQGYNILSRNESKLHKLTEKCILAAAGCQTDVTTLRNVLDIRMQMYQHNVGHEMPTTAVAQMLANTLYYRRFFPYYSFNVLCGIDKEGKGVVYSYDAIGSFESVPYSASGSGQSYIIPLMDSTVAFKNRTQPKPNYTIEETVDIVKSAFVTAGERDIYTGDEVEIKVLTAEGCRSEIFPLKKD 255
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9226.17400.1 vs.
Match: Proteasome (subunit beta n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DDA1_9STRA)

HSP 1 Score: 288 bits (737), Expect = 2.700e-95
Identity = 140/202 (69.31%), Postives = 168/202 (83.17%), Query Frame = 1 
Query:    1 TTLAIAGADYVVVAADTRMSTGYSIMSRDQTKLHQLTSKCVIASAGCKTDVTTLWKELDVSMTMYDHNMEKEMATPAVAQMLANTLYYRRFFPYYSFNVLCGLDEQGKGSVFSYDAIGSFERVPYSASGSGQTYIIPLLDNLVEFKTRKDEKPARSAAETVELVKELFVTAGERDIYTGDAVEITIISKDGTSTQMFPLKKD 606
            TTLA+AG D+VVVA DTRMS+GY I+SR  +KLH LTSKC++A+AGCKTDV TL   L++ M MYDH+  KEM+T A AQML+NTLYYRRFFPYYSFNVL GLDE+G+G+VFSYDAIGS+ER P+SASGSGQ+Y+IPL+DNLV FKTR D  P  ++ E V +VK+ FVTAGERDIYTGD +EI++I KDG  T  FPLKKD
Sbjct:   95 TTLAVAGKDFVVVAGDTRMSSGYEILSRKVSKLHPLTSKCILAAAGCKTDVDTLTNMLNIKMQMYDHDCGKEMSTTAAAQMLSNTLYYRRFFPYYSFNVLAGLDEEGRGAVFSYDAIGSYERTPFSASGSGQSYLIPLMDNLVTFKTRTDVMPDFTSEEAVNIVKDAFVTAGERDIYTGDTLEISVIKKDGIETITFPLKKD 296
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9226.17400.1 vs.
Match: Proteasome (subunit beta n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FLM8_9STRA)

HSP 1 Score: 281 bits (720), Expect = 3.580e-93
Identity = 141/202 (69.80%), Postives = 166/202 (82.18%), Query Frame = 1 
Query:    1 TTLAIAGADYVVVAADTRMSTGYSIMSRDQTKLHQLTSKCVIASAGCKTDVTTLWKELDVSMTMYDHNMEKEMATPAVAQMLANTLYYRRFFPYYSFNVLCGLDEQGKGSVFSYDAIGSFERVPYSASGSGQTYIIPLLDNLVEFKTRKDEKPARSAAETVELVKELFVTAGERDIYTGDAVEITIISKDGTSTQMFPLKKD 606
            TTLA++G D+VVVA DTRMS+GY I SR+  KLHQLTSK V+A+AGCKTDV TL   L   M MY+H+  KEM+T AVAQML+NTLY RRFFPYYSFNVL GLDE+GKG+VFSYDAIGS+ER P+SASGSGQ+Y+IPL+DNLV FKTR D  P  +  E V +VK+ FVTAGERDIYTGDAVEI +IS  G +T++FPLKKD
Sbjct:   63 TTLAVSGKDFVVVAGDTRMSSGYEIKSRNVPKLHQLTSKTVLAAAGCKTDVDTLTNLLRTRMQMYEHDCNKEMSTTAVAQMLSNTLYGRRFFPYYSFNVLAGLDEEGKGAVFSYDAIGSYERTPFSASGSGQSYLIPLMDNLVTFKTRLDPVPDMTVEEIVSIVKDAFVTAGERDIYTGDAVEIKVISATGVTTELFPLKKD 264
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9226.17400.1 vs.
Match: Proteasome (subunit beta n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SKB7_9STRA)

HSP 1 Score: 280 bits (717), Expect = 7.830e-93
Identity = 136/202 (67.33%), Postives = 166/202 (82.18%), Query Frame = 1 
Query:    1 TTLAIAGADYVVVAADTRMSTGYSIMSRDQTKLHQLTSKCVIASAGCKTDVTTLWKELDVSMTMYDHNMEKEMATPAVAQMLANTLYYRRFFPYYSFNVLCGLDEQGKGSVFSYDAIGSFERVPYSASGSGQTYIIPLLDNLVEFKTRKDEKPARSAAETVELVKELFVTAGERDIYTGDAVEITIISKDGTSTQMFPLKKD 606
            TTLAIAG D+VVVAADTR+S+GY I+SR+ +KLH LT +CV+A+AGCKTDV TL   L   M MY+H+M K M TPAVAQML+NTLYYRRFFPYYSFNVL G+D  GKG+VFSYDAIGS+ERVPYS+SGSGQ Y++PL+DNLV FK R+D  P  +  E V +VK+ F+TAGERDIYTGDAVEI +I+  G ++++ PLKKD
Sbjct:   55 TTLAIAGKDFVVVAADTRLSSGYEILSRNVSKLHPLTGRCVLAAAGCKTDVDTLRNTLHARMQMYEHDMGKAMDTPAVAQMLSNTLYYRRFFPYYSFNVLAGIDSDGKGAVFSYDAIGSYERVPYSSSGSGQNYMVPLMDNLVCFKNRQDTPPELTMEEVVRIVKDAFITAGERDIYTGDAVEIKVITASGVASEIMPLKKD 256
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9226.17400.1 vs.
Match: Proteasome (subunit beta n=2 Tax=Lithodesmiaceae TaxID=49247 RepID=A0A7S2N0R8_9STRA)

HSP 1 Score: 274 bits (701), Expect = 3.470e-90
Identity = 133/202 (65.84%), Postives = 164/202 (81.19%), Query Frame = 1 
Query:    1 TTLAIAGADYVVVAADTRMSTGYSIMSRDQTKLHQLTSKCVIASAGCKTDVTTLWKELDVSMTMYDHNMEKEMATPAVAQMLANTLYYRRFFPYYSFNVLCGLDEQGKGSVFSYDAIGSFERVPYSASGSGQTYIIPLLDNLVEFKTRKDEKPARSAAETVELVKELFVTAGERDIYTGDAVEITIISKDGTSTQMFPLKKD 606
            TTLAI+G DY VVAADTR+S+GY I+SRD TKLH LT KCV+ SAGCKTDV  L   LD+ M +Y HN  K M+TP+VAQML+NTLYY+RFFPYY+FNVL G+D +GKG+V+SYDAIGSFER P+SASGSGQ+++IPL+DN++  K R DEK    + E VE+VK+ FVTAGERDIYTGDAVEI +I+K+G   ++F LK D
Sbjct:   70 TTLAISGPDYAVVAADTRLSSGYEILSRDVTKLHALTEKCVLGSAGCKTDVDQLRSVLDIKMKIYAHNHRKPMSTPSVAQMLSNTLYYKRFFPYYAFNVLAGVDAEGKGAVYSYDAIGSFERTPFSASGSGQSFLIPLMDNVIAHKNRCDEKRDLPSEEVVEIVKDAFVTAGERDIYTGDAVEIMVITKEGIKKEIFKLKAD 271
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9226.17400.1 vs.
Match: Proteasome (subunit beta n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S6G4_THAOC)

HSP 1 Score: 273 bits (697), Expect = 2.090e-89
Identity = 132/202 (65.35%), Postives = 162/202 (80.20%), Query Frame = 1 
Query:    1 TTLAIAGADYVVVAADTRMSTGYSIMSRDQTKLHQLTSKCVIASAGCKTDVTTLWKELDVSMTMYDHNMEKEMATPAVAQMLANTLYYRRFFPYYSFNVLCGLDEQGKGSVFSYDAIGSFERVPYSASGSGQTYIIPLLDNLVEFKTRKDEKPARSAAETVELVKELFVTAGERDIYTGDAVEITIISKDGTSTQMFPLKKD 606
            TTLAI+G DY VVAADTR+S+GY I+SR+ +KLH LT +CV+ SAGCKTDV  L   LD+ M +Y HN  K MATP+VAQML NTLYY+RFFPYYSFNVL G+D +GKG+V+SYDAIGSFER P+SASGSGQ+++IPL+DN++  K R DE+    A E VE+VK+ F+TAGERDIYTGDAV+I +I+KDG   Q F LK D
Sbjct:   82 TTLAISGPDYAVVAADTRLSSGYEILSRNVSKLHPLTGRCVLGSAGCKTDVDQLRSVLDIKMKVYAHNHRKPMATPSVAQMLGNTLYYKRFFPYYSFNVLAGIDSEGKGAVYSYDAIGSFERTPFSASGSGQSFLIPLMDNVISHKNRLDERRDLPAEEVVEIVKDAFLTAGERDIYTGDAVDIMVITKDGIDKQTFQLKAD 283
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9226.17400.1 vs.
Match: Proteasome (subunit beta n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PW57_9STRA)

HSP 1 Score: 271 bits (692), Expect = 8.630e-89
Identity = 130/202 (64.36%), Postives = 162/202 (80.20%), Query Frame = 1 
Query:    1 TTLAIAGADYVVVAADTRMSTGYSIMSRDQTKLHQLTSKCVIASAGCKTDVTTLWKELDVSMTMYDHNMEKEMATPAVAQMLANTLYYRRFFPYYSFNVLCGLDEQGKGSVFSYDAIGSFERVPYSASGSGQTYIIPLLDNLVEFKTRKDEKPARSAAETVELVKELFVTAGERDIYTGDAVEITIISKDGTSTQMFPLKKD 606
            TTLAI+G DY +VAADTR+STGY I+SR+ TKLH+LTSKCV+ SAGCKTD+  L   LD++  +Y HN  KEM+TP+VAQML NTLYY+RFFPYYSFNVL G+D++GKG+V+SYDAIGSFER P +A+GSGQ+++IPLLDN+++   R DEK    A E VE+VK+ FVTAGERDIYTGD +EI +I   G +   FPLK D
Sbjct:   72 TTLAISGPDYAIVAADTRLSTGYQILSRNVTKLHELTSKCVLGSAGCKTDIDQLRSVLDINQKVYHHNHRKEMSTPSVAQMLGNTLYYKRFFPYYSFNVLAGVDKEGKGAVYSYDAIGSFERTPVTATGSGQSFLIPLLDNVIKHNNRNDEKRDLPAEEVVEIVKDAFVTAGERDIYTGDMLEIKVIRASGITNISFPLKAD 273
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9226.17400.1 vs.
Match: Proteasome (subunit beta n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3TS88_9STRA)

HSP 1 Score: 270 bits (691), Expect = 1.540e-88
Identity = 132/202 (65.35%), Postives = 161/202 (79.70%), Query Frame = 1 
Query:    1 TTLAIAGADYVVVAADTRMSTGYSIMSRDQTKLHQLTSKCVIASAGCKTDVTTLWKELDVSMTMYDHNMEKEMATPAVAQMLANTLYYRRFFPYYSFNVLCGLDEQGKGSVFSYDAIGSFERVPYSASGSGQTYIIPLLDNLVEFKTRKDEKPARSAAETVELVKELFVTAGERDIYTGDAVEITIISKDGTSTQMFPLKKD 606
            TTLAI+G DY VVAADTR+S+GY I+SR+ +KLH LT +CV+ SAGCKTDV  L   LD+ M +Y HN  K MATP+VAQML NTLY +RFFPYYSFNVL G+D +GKG+V+SYDAIGSFER P+SASGSGQ ++IPL+DN++  K R DE+      E VE+VK+ F+TAGERDIYTGDAVEI II+K+G  T+MF LK D
Sbjct:   79 TTLAISGPDYAVVAADTRLSSGYEILSRNVSKLHPLTERCVLGSAGCKTDVDQLRSVLDIKMKVYQHNHRKPMATPSVAQMLGNTLYMKRFFPYYSFNVLAGIDSEGKGAVYSYDAIGSFERTPFSASGSGQAFLIPLMDNVISHKNRCDEQRDLPVEEVVEIVKDAFLTAGERDIYTGDAVEIKIITKEGIRTEMFNLKAD 280
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9226.17400.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Proteasome2.020e-13899.50subunit beta n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
Proteasome2.000e-10978.71subunit beta n=1 Tax=Tribonema minus TaxID=303371 ... [more]
Proteasome1.390e-9568.81subunit beta n=1 Tax=Fibrocapsa japonica TaxID=946... [more]
Proteasome2.700e-9569.31subunit beta n=1 Tax=Dictyocha speculum TaxID=3568... [more]
Proteasome3.580e-9369.80subunit beta n=1 Tax=Florenciella parvula TaxID=23... [more]
Proteasome7.830e-9367.33subunit beta n=1 Tax=Rhizochromulina marina TaxID=... [more]
Proteasome3.470e-9065.84subunit beta n=2 Tax=Lithodesmiaceae TaxID=49247 R... [more]
Proteasome2.090e-8965.35subunit beta n=1 Tax=Thalassiosira oceanica TaxID=... [more]
Proteasome8.630e-8964.36subunit beta n=1 Tax=Chaetoceros debilis TaxID=122... [more]
Proteasome1.540e-8865.35subunit beta n=1 Tax=Skeletonema marinoi TaxID=267... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9226contigEcto-sp9_F_contig9226:1746..4128 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score395.6
Seed ortholog evalue1.4e-107
Seed eggNOG ortholog2880.D7FYM7
Preferred namePSMB1
KEGG koko:K02732
KEGG Pathwayko03050,map03050
KEGG ModuleM00337,M00340
GOsGO:0000502,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0005839,GO:0005886,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006887,GO:0006950,GO:0006952,GO:0006955,GO:0007088,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009507,GO:0009536,GO:0009605,GO:0009607,GO:0009620,GO:0009814,GO:0009817,GO:0009896,GO:0009987,GO:0010498,GO:0010499,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0016020,GO:0016192,GO:0016579,GO:0019538,GO:0019748,GO:0019774,GO:0019941,GO:0030071,GO:0030141,GO:0030163,GO:0031331,GO:0031410,GO:0031597,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0031984,GO:0032270,GO:0032436,GO:0032940,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034515,GO:0034774,GO:0036211,GO:0036230,GO:0042119,GO:0042175,GO:0043161,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044433,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045055,GO:0045087,GO:0045321,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0046903,GO:0048046,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050832,GO:0050896,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051247,GO:0051603,GO:0051704,GO:0051707,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060205,GO:0062033,GO:0065007,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071944,GO:0090068,GO:0097708,GO:0098542,GO:0098827,GO:0099503,GO:0101002,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1904813,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:2001252
EggNOG free text desc.threonine-type endopeptidase activity
EggNOG OGsCOG0638@1,KOG0179@2759
EC3.4.25.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03051
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProteasome, subunit alpha/beta
Ec32 orthologEc-26_002800.1
Exons2
Model size609
Cds size609
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930997.738418-CDS-Ecto-sp9_F_contig9226:1745..21631622930997.738418-CDS-Ecto-sp9_F_contig9226:1745..2163Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9226 1746..2163 -
1692278986.0749383-CDS-Ecto-sp9_F_contig9226:1745..21631692278986.0749383-CDS-Ecto-sp9_F_contig9226:1745..2163Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9226 1746..2163 -
1622930997.7655892-CDS-Ecto-sp9_F_contig9226:3937..41281622930997.7655892-CDS-Ecto-sp9_F_contig9226:3937..4128Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9226 3938..4128 -
1692278986.0894687-CDS-Ecto-sp9_F_contig9226:3937..41281692278986.0894687-CDS-Ecto-sp9_F_contig9226:3937..4128Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9226 3938..4128 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9226.17400.1prot_Ecto-sp9_F_contig9226.17400.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9226 1746..4128 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9226.17400.1

>prot_Ecto-sp9_F_contig9226.17400.1 ID=prot_Ecto-sp9_F_contig9226.17400.1|Name=mRNA_Ecto-sp9_F_contig9226.17400.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=203bp
TTLAIAGADYVVVAADTRMSTGYSIMSRDQTKLHQLTSKCVIASAGCKTD
VTTLWKELDVSMTMYDHNMEKEMATPAVAQMLANTLYYRRFFPYYSFNVL
CGLDEQGKGSVFSYDAIGSFERVPYSASGSGQTYIIPLLDNLVEFKTRKD
EKPARSAAETVELVKELFVTAGERDIYTGDAVEITIISKDGTSTQMFPLK
KD*
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mRNA from alignment at Ecto-sp9_F_contig9226:1746..4128-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9226.17400.1 ID=mRNA_Ecto-sp9_F_contig9226.17400.1|Name=mRNA_Ecto-sp9_F_contig9226.17400.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2383bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9226:1746..4128- (Ectocarpus species9 EcSCA_722f female)
ACGACCCTTGCCATCGCAGGCGCCGACTACGTGGTTGTTGCGGCCGATAC
CAGAATGAGTACAGGATACTCCATCATGTCACGCGATCAGACCAAGCTTC
ATCAGCTTACCTCGAAGTGCGTGATTGCCTCTGCTGGTTGCAAGACAGAC
GTGACAACCCTGTGGAAAGAGCTGGATGTTAGCATGACCATGTAAGTTCC
GTAGGAACCACGTACTATGCAACTTGAAAACATGATACTATATAATGAAT
CGGGTTGGTATAGGTGCTGGTGTGTCTTGAGACCGTCGACGAACGTCTGT
TCAATGTCAAATCTGCGTCTGTGTGACGCCGTAGATTTGTCTCTTACCTT
GCGGGTGGCGCTGTAAGTATGATATTTTGCCGATGTGATGATGTCTTTGA
TACAGAGAAGTGGCGACCCAGGGAAACGGCCGTTCGCGACGAAAGTGTCC
TTTCGCACAGCAGTAGTCTTAAGTACCAATGCTGTTGGTTGTTCGTGCTG
GCGGTCGTGTGTCTAATCAAGTAACTGCGTCCATTTTGTTACGCATTGAG
AAAAATTCCTAACCGTGTATTCGGTCGGAAAGGGTCATAACCTACGACTA
GAGGTAGGGAACATTGGCTCAAGTTCAAGCTCGGCCCTCAGGCCTCACAG
CGACGCCTGAGAGCGAAGCGGCGGGACTAGGCCTACTCTCAAATCGACAC
GATATCGTCACATCGCGGCACGCGTCGCAGGGGGTGCCGCTCGGCCTCCC
TCACCCCGGAGTCCACGGGACGCCCTCTCTCAGCGAGACGTTGCCGCCGA
GGGCTCCCGGCGCCGAGCGCCGGGCGAGCTTCCCGCGCCGGCGGAAGCAC
TCCAAACCACGTGCTCGCACCTTCATTGGCACCTCGGACCTCTTCAAGCG
AGACTGTCAATAAACGCCGCTTGTGGTTGGGCGGAACTCTCTACCGGTGT
ATTTTTGGGAACTTGAAGTCATCACAGACCTCGGAACTCGGAACTCGGAA
CTGTCTAGCAAAACAAGCAACACTTAATGTCTACCTCTTGTGTACTTACT
GCGAAATGGTACATCAGCACTTGCTACACCATCGTGTGCTGGGGACTGCT
GTGTAACACTGCTACCTCGCCATGTGTGTGCGACCAAGAGTGGGCAAACA
TCTCTCCCAATAATGTGAAGATGTGGCAACTTGACGGATATTTCGAGAAT
TCATATTTTGCCTCTCGGAACTCGGAACATCTCTCTTGTGCTGGTTACTG
GGGGAAACGGTGATGTGTGTGCGAAGCATATACTATTATACTAGTGTACA
TGCGTTGTGTGAGCCCCACAGAGCCATAGCTATAGGTACTGTAGGTACCA
GCCAAAGTCACGCACGGACAGGCTGGCACACATAGAGGCGATGTCGTGTT
CATGTGTGCGCCCGGCTTGAACGCAAAAAGTTCGTTCTGACAAAAAAACT
GGCTCTGGGAATACACCTCTCTCAAAGCCTGCTAACCCTAAAGTATGGAT
TGAATACTTTATCCCATATGTTTGCTTACTGAATTTTGCTGCGTAGACTA
CTGATCTATCTCTCTGCTGTGGGGAGGACGACGGTATGTGTTTGCGTGCA
AAACATTACTACTGCTGTTGCTGTAGTCTCACGGCTATAGCTTTGGCACA
AGCCACACTCACACACAATTGCAGTTTTAGAGAAGTGTGGAAGGAGCATG
ATGACGCACGCTTCTCCCAACTTTGAACCTGCAGTTATCGTTCTTTTCTG
CTGTACACCACCACCAACGAACCACAGTCCCACTTGGTACGCGGTTATGT
GCTTTGCTGATCGGTGATGTCACTTGACTTATTTGTGGGCTAGGGCACCA
AGCATGTTCGCGGCCAGCTATTTGCGTTGCTGTCTCTTGTGCACACATGA
GGTTGCAAACATCACCGGCAACATCGGCTCATCATTCGTTGCGTTCGTTG
ATATTTTCACGTCAGGTATGATCACAACATGGAAAAGGAGATGGCGACCC
CAGCAGTGGCTCAGATGCTTGCCAATACCCTATACTACCGGCGATTCTTC
CCTTACTACTCTTTCAACGTCCTGTGCGGTCTGGATGAACAGGGGAAGGG
ATCTGTCTTTTCTTACGATGCTATTGGGTCGTTCGAACGAGTCCCGTACA
GCGCGTCAGGCTCTGGCCAGACGTACATAATCCCACTCCTTGACAACTTG
GTAGAATTCAAAACACGAAAGGACGAGAAGCCCGCACGCTCAGCAGCTGA
AACGGTGGAGTTGGTGAAAGAGCTGTTCGTCACCGCAGGCGAACGAGACA
TCTACACGGGGGACGCGGTGGAGATCACAATCATTTCAAAAGATGGCACA
TCGACACAGATGTTCCCGCTTAAGAAAGATTAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9226:1746..4128-

>mRNA_Ecto-sp9_F_contig9226.17400.1 ID=mRNA_Ecto-sp9_F_contig9226.17400.1|Name=mRNA_Ecto-sp9_F_contig9226.17400.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1218bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9226:1746..4128- (Ectocarpus species9 EcSCA_722f female)
ACGACCCTTGCCATCGCAGGCGCCGACTACGTGGTTGTTGCGGCCGATAC
CAGAATGAGTACAGGATACTCCATCATGTCACGCGATCAGACCAAGCTTC
ATCAGCTTACCTCGAAGTGCGTGATTGCCTCTGCTGGTTGCAAGACAGAC
GTGACAACCCTGTGGAAAGAGCTGGATGTTAGCATGACCATACGACCCTT
GCCATCGCAGGCGCCGACTACGTGGTTGTTGCGGCCGATACCAGAATGAG
TACAGGATACTCCATCATGTCACGCGATCAGACCAAGCTTCATCAGCTTA
CCTCGAAGTGCGTGATTGCCTCTGCTGGTTGCAAGACAGACGTGACAACC
CTGTGGAAAGAGCTGGATGTTAGCATGACCATGTATGATCACAACATGGA
AAAGGAGATGGCGACCCCAGCAGTGGCTCAGATGCTTGCCAATACCCTAT
ACTACCGGCGATTCTTCCCTTACTACTCTTTCAACGTCCTGTGCGGTCTG
GATGAACAGGGGAAGGGATCTGTCTTTTCTTACGATGCTATTGGGTCGTT
CGAACGAGTCCCGTACAGCGCGTCAGGCTCTGGCCAGACGTACATAATCC
CACTCCTTGACAACTTGGTAGAATTCAAAACACGAAAGGACGAGAAGCCC
GCACGCTCAGCAGCTGAAACGGTGGAGTTGGTGAAAGAGCTGTTCGTCAC
CGCAGGCGAACGAGACATCTACACGGGGGACGCGGTGGAGATCACAATCA
TTTCAAAAGATGGCACATCGACACAGATGTTCCCGCTTAAGAAAGATTAG
GTATGATCACAACATGGAAAAGGAGATGGCGACCCCAGCAGTGGCTCAGA
TGCTTGCCAATACCCTATACTACCGGCGATTCTTCCCTTACTACTCTTTC
AACGTCCTGTGCGGTCTGGATGAACAGGGGAAGGGATCTGTCTTTTCTTA
CGATGCTATTGGGTCGTTCGAACGAGTCCCGTACAGCGCGTCAGGCTCTG
GCCAGACGTACATAATCCCACTCCTTGACAACTTGGTAGAATTCAAAACA
CGAAAGGACGAGAAGCCCGCACGCTCAGCAGCTGAAACGGTGGAGTTGGT
GAAAGAGCTGTTCGTCACCGCAGGCGAACGAGACATCTACACGGGGGACG
CGGTGGAGATCACAATCATTTCAAAAGATGGCACATCGACACAGATGTTC
CCGCTTAAGAAAGATTAG
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