mRNA_Ecto-sp9_F_contig9225.17399.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9225.17399.1
Unique NamemRNA_Ecto-sp9_F_contig9225.17399.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9225.17399.1 vs.
Match: Protein (HGH1 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1I7_ECTSI)

HSP 1 Score: 389 bits (998), Expect = 6.920e-131
Identity = 205/217 (94.47%), Postives = 206/217 (94.93%), Query Frame = 1 
Query:    1 RQAAAATAVAASATKEGVALLHKCGAVKWLCRISGDVGTIGKDAVSCLVNVSAEETSVAALEDMCKAGIVNRMMEAVSDEQCLPFMRDLCLQLLANVTRVQVGATKLVQVGVAGGALREGQYIRRLARWLAKHPADNGLPYPELVGGSRDDARVVDRRAALRDTQADDXXXXXXXXXXXXXGRGATQKRERKGGEVLDQWQHCASVLCNAARIPEGR 651
            RQAAAATAVAASATKEGVALLHKCGAVKWLCRISGDVGTIGKDAVSCLVNVSAEETSVAALEDMCKAGIVNRMMEAVSDEQC+PFMRDLCLQLLANVTRVQVGATKL QVGVAGGALREGQYIRRLARWLAKHPADNGLPYP LVGGSRDDARVVDRRAALRDTQADDXXXX         GRGATQKRERKGGEVLDQWQHCASVLCNAARIPEGR
Sbjct:   75 RQAAAATAVAASATKEGVALLHKCGAVKWLCRISGDVGTIGKDAVSCLVNVSAEETSVAALEDMCKAGIVNRMMEAVSDEQCIPFMRDLCLQLLANVTRVQVGATKLAQVGVAGGALREGQYIRRLARWLAKHPADNGLPYPVLVGGSRDDARVVDRRAALRDTQADDXXXXE--------GRGATQKRERKGGEVLDQWQHCASVLCNAARIPEGR 283
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9225.17399.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Protein6.920e-13194.47HGH1 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9225contigEcto-sp9_F_contig9225:1879..5248 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score389.4
Seed ortholog evalue1.1e-105
Seed eggNOG ortholog2880.D7G1I7
Preferred nameHGH1
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464
EggNOG free text desc.Domain of unknown function (DUF383)
EggNOG OGsKOG2973@1,KOG2973@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionArmadillo-type fold
Ec32 orthologEc-07_001180.1
Exons5
Model size654
Cds size654
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9225.17399.1prot_Ecto-sp9_F_contig9225.17399.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9225 1879..5248 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930997.59458-CDS-Ecto-sp9_F_contig9225:1878..20791622930997.59458-CDS-Ecto-sp9_F_contig9225:1878..2079Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9225 1879..2079 -
1692278986.0143056-CDS-Ecto-sp9_F_contig9225:1878..20791692278986.0143056-CDS-Ecto-sp9_F_contig9225:1878..2079Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9225 1879..2079 -
1622930997.6219049-CDS-Ecto-sp9_F_contig9225:2795..29451622930997.6219049-CDS-Ecto-sp9_F_contig9225:2795..2945Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9225 2796..2945 -
1692278986.0264742-CDS-Ecto-sp9_F_contig9225:2795..29451692278986.0264742-CDS-Ecto-sp9_F_contig9225:2795..2945Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9225 2796..2945 -
1622930997.644475-CDS-Ecto-sp9_F_contig9225:4065..41531622930997.644475-CDS-Ecto-sp9_F_contig9225:4065..4153Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9225 4066..4153 -
1692278986.036765-CDS-Ecto-sp9_F_contig9225:4065..41531692278986.036765-CDS-Ecto-sp9_F_contig9225:4065..4153Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9225 4066..4153 -
1622930997.6658442-CDS-Ecto-sp9_F_contig9225:4506..46081622930997.6658442-CDS-Ecto-sp9_F_contig9225:4506..4608Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9225 4507..4608 -
1692278986.0478466-CDS-Ecto-sp9_F_contig9225:4506..46081692278986.0478466-CDS-Ecto-sp9_F_contig9225:4506..4608Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9225 4507..4608 -
1622930997.6829565-CDS-Ecto-sp9_F_contig9225:5135..52481622930997.6829565-CDS-Ecto-sp9_F_contig9225:5135..5248Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9225 5136..5248 -
1692278986.0626154-CDS-Ecto-sp9_F_contig9225:5135..52481692278986.0626154-CDS-Ecto-sp9_F_contig9225:5135..5248Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9225 5136..5248 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9225.17399.1

>prot_Ecto-sp9_F_contig9225.17399.1 ID=prot_Ecto-sp9_F_contig9225.17399.1|Name=mRNA_Ecto-sp9_F_contig9225.17399.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=218bp
RQAAAATAVAASATKEGVALLHKCGAVKWLCRISGDVGTIGKDAVSCLVN
VSAEETSVAALEDMCKAGIVNRMMEAVSDEQCLPFMRDLCLQLLANVTRV
QVGATKLVQVGVAGGALREGQYIRRLARWLAKHPADNGLPYPELVGGSRD
DARVVDRRAALRDTQADDDDDDDDDDDDDDEGRGATQKRERKGGEVLDQW
QHCASVLCNAARIPEGR*
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mRNA from alignment at Ecto-sp9_F_contig9225:1879..5248-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9225.17399.1 ID=mRNA_Ecto-sp9_F_contig9225.17399.1|Name=mRNA_Ecto-sp9_F_contig9225.17399.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3370bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9225:1879..5248- (Ectocarpus species9 EcSCA_722f female)
AGGCAAGCCGCGGCAGCTACAGCCGTAGCGGCATCCGCCACCAAGGAGGG
CGTGGCGCTCCTGCACAAGTGCGGTGCCGTGAAGTGGTTGTGCCGCATTT
CGGGGGACGTGGGGTGAGTGCTTATTATCGTCTCGCTTCCAATCCTGTCG
ACTTTTTTATTCAGGGCCGAAAAAATGCGGGGCAACTAATTAACGCGTTT
GATGTCTGGCGTGTTGGTTGCGTGCTGAGGAAACACCTACCGCCGTTGGG
GAGTAGTGTTGTTGGCTAACATGTTTTTTATTTCTCTCTCTATTTTTAGC
AAGGATATATATACCGGAGAATGTCGGATGCACAAGTCGATCTCTTGTTT
TTCTCGATGTTTTCTGGTGTGTGCTTGGTGGGATTTCGAAAACGCCTCTT
TTCCCGATTGCTTCGGTCTGTGCAACGAGCAAGAACGTCGTTGGAAGTGG
ATGTGGGAGCAATGAACACTGGTGTCCATCCGGACACGTACGCGACAACA
CGAAAGTAGAAGTTCAACAACCACGACTAATTTGCCCAACCACAGGACGA
GCGAGAACAAAAATCAACATGTAGGTCGGTGGCGATTATTTTGTGTGTTG
ATGTTGTGCTTTTCCGGCGTTCGTCCGTTTTTTTTCACAGAACTATCGGC
AAGGACGCGGTATCATGTTTGGTCAACGTGAGCGCGGAGGAGACTTCTGT
GGCTGCACTTGAGGACATGTGCAAGGCTGGCATCGTTAACAGGTACGGTG
GACAATAGCATTTGTGTGGGAAATACCTGTAGGCATTTTTGCGATAAACA
CGACCATGGATTAATACCAAAGCACTATCCTCTTTGAGCGTTAATCGTTT
CTGCGCGGCTGAAGTTGTTCCGTGTCTATGGTCGTTTCTGGGTGCTTTGT
TGTTGCCTCCCTTGGACATTCGAATTGTTCCAACGTTCCAACTGCCAATA
GTTAGGCTATACCACCTGTTCAGCAGCAGCCGAAAGGGCAACATCGACAA
CAACACCACCACCACCACCAACAATAACAACAACAATTGCCGTGCCTTTT
TTTTCTTCCGGTTGACTTATTTTGCGTAAATGTCCGTGATCCCAGGATGA
TGGAGGCAGTGTCGGACGAGCAGTGTCTACCCTTCATGCGCGACTTGTGT
CTCCAGCTGCTCGCCAACGTCACGCGTGTGCAGGTAATACTCAAGCGCCC
CGCATGCTGTATTTCGCCTTTTGTGTGCTGAGCTCGTCCAGCTGCGAATC
GTAGTGCGCTCATCCAAAACTGGTTTTGAAGTTGCCGATAACAACGCACC
GTGTGTTGTCTGCTGGGACAACGGGCAACTGGTCCGGCGTTTGCCGAAGT
TGCAGACAAGCTTTGCGGGCAACGGCGTGATGACTATTCTCTCCGGCAGT
CTGTGTCGGGAGGGCGAATTTGAAATGGGACCCTATTTCCTATCGTGTGT
GACACGCACTTTCACGCCCCTGGTTTCTCAGCGTTTTTTTTTACGTACTC
TGGTATCACTCTGCTGCGCCTCCTCCTGTCACTGCCGGTTCTCTGGTTTC
TTGCCAATTGGAGCAGAGCCTGCTCCGTTATGAACCCGTACGATTGAACC
GATCTGCGTACCCGTAATTTTTGTTGGAAAGCGAGCTCTACCCACCACCA
GACCGAAGTCCCCCGGCGATGGCACGGCCATGAACAGGGGTGCTGGCCAA
TATGTACCCACATGCGCCTGCCGTGAGATGCGCAAGTTCGAGCGGCTCGA
TCCTCCTCTCTGGGACTGTCTTCCCAAAACACGCAAAGCCAGGTTGTTTT
AGCGTGTTTAGTTTGAAGTCTCGTACGGAGATGATCGATTCCCCAAGGTG
CGGGCCGGGGGGGGTGCACGACTGTTGTGTTTCGTCGGTGCTTCGGGTTT
GAGGTTGCGTGTTATGCGCTCGCTGGGAGTGAGCACACAACGAACTCATT
TTCGTGATTGTGCGGGTGGCGTGTGGCTCTTTTCCACCCGACAACACTGC
TTGCTGGGAACAATGGTTTCCGGGGGAAACCAAAAGAAAGCATCATTCCG
GCGCCTTACGACGCTCCTTCTTGGTTCCGTGTCTACTGTACTCCCTAGAA
CATACCTTCAATGTTTGTCTGTATTACACTGGGGGGTGTCACAACTTTTG
GTTGTCTTTCTCTTTGCCTTGAAGGAATAAAAAAAGGAACATGCACTTTG
TACCACGTGCGATACTTTAGGAGACTATTACAGGAAGCATGGAGCGCCTT
TTGTTCTTATAATTTCAGTGAATCCTGTCGTGGCGTGGTGACACTTATAC
CAGGTCGGAGCGACGAAGTTGGTGCAAGTCGGCGTCGCGGGCGGCGCGCT
GCGGGAAGGCCAGTACATCAGGAGGCTGGCGCGGTGGCTTGCGAAGCACC
CGGCCGATAACGGGTTGCCCTACCCCGAGCTCGTTGGCGGCAGTCGAGAT
GACGTGAGAATTTCTTGCTCTTGCTTGTTTGCGTTCTTCATGCCCTGTCG
ATTATCTTGGTTGCGATTTGTCAGCTGTGTCGCTTGTTTTGAGTTGTTGC
GACGTATGAGCGAAATCGTCATTTGTATAGAATTTCTTTTGGGGGGGGGT
GCGGTTTGTTGGCGATGTCTAGTGGGGGCTCGTTTTCTCGGGCATGTGGT
TTCACGAACGTTTTTTTTTTTTATATATGTCTTCGTCACAATATGATCAC
TTGCTTTGCTGATTGGCGGGGGGAAATTAGACTGTTTTTGTTGGCACTGC
TACATGTCCAGGTCGACGGTTGCTTGGCTCTAGGTTGGCGGAGGAGTTGG
CGGGACGGAGTAGGATCGAGCATGGATCGAACGCACTCTACAGAACGCAG
TGGTTGTCATGTCCTTCGGTAGTGGTTGTTCCTGCGTTGGAGACAGCACG
TCTTGCGCGATGCCACGGAAGGCGGGATGATCGAAGATATGGCGGGTAAA
CGCAGAGCATTCATCTTGATCCGTGTCCACTCTGCCCTCACCCTGCCGTA
CGGTGCGGTCCTTCAAAATTTGATCCAACTTTCGACCACCTGCGCTTTGA
CGCCGAGCGTATGACTGACGCCACTAGTACACTCGGTTGTGGCGATGCTA
TCACCAACCACATGCTGCAACAATGCCACCACCAACCACCGCTGCTGCTG
CTGCTGTGTGTCGGTCCAGGCTAGGGTGGTGGACAGGAGAGCGGCCCTCC
GCGATACCCAAGCAGACGACGACGACGACGACGACGACGACGACGACGAC
GACGACGAGGGAAGGGGGGCGACGCAGAAGAGAGAACGAAAGGGCGGGGA
GGTGCTCGACCAATGGCAGCACTGCGCGAGCGTGCTTTGCAACGCTGCCA
GGATCCCGGAGGGAAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9225:1879..5248-

>mRNA_Ecto-sp9_F_contig9225.17399.1 ID=mRNA_Ecto-sp9_F_contig9225.17399.1|Name=mRNA_Ecto-sp9_F_contig9225.17399.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1308bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9225:1879..5248- (Ectocarpus species9 EcSCA_722f female)
AGGCAAGCCGCGGCAGCTACAGCCGTAGCGGCATCCGCCACCAAGGAGGG
CGTGGCGCTCCTGCACAAGTGCGGTGCCGTGAAGTGGTTGTGCCGCATTT
CGGGGGACGTGGGAGGCAAGCCGCGGCAGCTACAGCCGTAGCGGCATCCG
CCACCAAGGAGGGCGTGGCGCTCCTGCACAAGTGCGGTGCCGTGAAGTGG
TTGTGCCGCATTTCGGGGGACGTGGGAACTATCGGCAAGGACGCGGTATC
ATGTTTGGTCAACGTGAGCGCGGAGGAGACTTCTGTGGCTGCACTTGAGG
ACATGTGCAAGGCTGGCATCGTTAACAGAACTATCGGCAAGGACGCGGTA
TCATGTTTGGTCAACGTGAGCGCGGAGGAGACTTCTGTGGCTGCACTTGA
GGACATGTGCAAGGCTGGCATCGTTAACAGGATGATGGAGGCAGTGTCGG
ACGAGCAGTGTCTACCCTTCATGCGCGACTTGTGTCTCCAGCTGCTCGCC
AACGTCACGCGTGTGCAGGATGATGGAGGCAGTGTCGGACGAGCAGTGTC
TACCCTTCATGCGCGACTTGTGTCTCCAGCTGCTCGCCAACGTCACGCGT
GTGCAGGTCGGAGCGACGAAGTTGGTGCAAGTCGGCGTCGCGGGCGGCGC
GCTGCGGGAAGGCCAGTACATCAGGAGGCTGGCGCGGTGGCTTGCGAAGC
ACCCGGCCGATAACGGGTTGCCCTACCCCGAGCTCGTTGGCGGCAGTCGA
GATGACGTCGGAGCGACGAAGTTGGTGCAAGTCGGCGTCGCGGGCGGCGC
GCTGCGGGAAGGCCAGTACATCAGGAGGCTGGCGCGGTGGCTTGCGAAGC
ACCCGGCCGATAACGGGTTGCCCTACCCCGAGCTCGTTGGCGGCAGTCGA
GATGACGCTAGGGTGGTGGACAGGAGAGCGGCCCTCCGCGATACCCAAGC
AGACGACGACGACGACGACGACGACGACGACGACGACGACGACGAGGGAA
GGGGGGCGACGCAGAAGAGAGAACGAAAGGGCGGGGAGGTGCTCGACCAA
TGGCAGCACTGCGCGAGCGTGCTTTGCAACGCTGCCAGGATCCCGGAGGG
AAGGTGAGCTAGGGTGGTGGACAGGAGAGCGGCCCTCCGCGATACCCAAG
CAGACGACGACGACGACGACGACGACGACGACGACGACGACGACGAGGGA
AGGGGGGCGACGCAGAAGAGAGAACGAAAGGGCGGGGAGGTGCTCGACCA
ATGGCAGCACTGCGCGAGCGTGCTTTGCAACGCTGCCAGGATCCCGGAGG
GAAGGTGA
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