mRNA_Ecto-sp9_F_contig9223.17398.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9223.17398.1
Unique NamemRNA_Ecto-sp9_F_contig9223.17398.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9223.17398.1 vs.
Match: Eukaryotic (translation initiation factor 2B gamma subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGC6_ECTSI)

HSP 1 Score: 419 bits (1077), Expect = 1.560e-144
Identity = 205/211 (97.16%), Postives = 209/211 (99.05%), Query Frame = 1 
Query:    1 QDIDYVGLTQSGRLVIKLPKLFVEEALRIQKALLRRHETVTLSTTLQDVSVYVLAHWVLGFLDDQRAITSVQNELVPALVRRQFKNPITGGETLSKRVGSVAGEALRGDAMVARMSSWRPSPDGDTADPGEGTPGVSEVRCFALTLRHGEAYCSQAKTLAAYCTINRELLTMREFSDKCPWSMPDGFRPKDSTLVGEGCHLGPKGTLKFSV 633
            +DIDYVGLTQSGRLVIKLPKLFVEEALRIQKALLRRHETVTLSTTLQDVSVYVLAHWVLGFLDDQRAITSVQNELVPALVRRQF+NP TGGE L+KRVGSVAGEALRGDAMVARMSSWRPSPDGDTADPGEGTPGV+EVRCFALTLRHGEAYCSQAKTLAAYCTINRELLTMREFSDKCPWSMPDGFRPKDSTLVGEGCHLGPKGTLKFSV
Sbjct:  159 EDIDYVGLTQSGRLVIKLPKLFVEEALRIQKALLRRHETVTLSTTLQDVSVYVLAHWVLGFLDDQRAITSVQNELVPALVRRQFRNPTTGGEPLTKRVGSVAGEALRGDAMVARMSSWRPSPDGDTADPGEGTPGVNEVRCFALTLRHGEAYCSQAKTLAAYCTINRELLTMREFSDKCPWSMPDGFRPKDSTLVGEGCHLGPKGTLKFSV 369
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9223.17398.1 vs.
Match: Eukaryotic (translation initiation factor 2B gamma subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVP1_9STRA)

HSP 1 Score: 140 bits (353), Expect = 1.560e-35
Identity = 90/228 (39.47%), Postives = 129/228 (56.58%), Query Frame = 1 
Query:    1 QDIDYVGLTQSGRLVIKLPKLFVEEALRIQKALLRRHETVTLSTTLQDVSVYVLAHWVLGFLDDQRAITSVQNELVPALVRRQFKNPITGGETLSK----RVGSVAGEALRGDA------------MVARMSSWRPSPDG-DTADPGEGTPGVSEVRCFALTLRHGEAYCSQAKTLAAYCTINRELLTMREFSDKCPWSMPDGFRPKDSTLVGEGCHLGPKGTLKFSV 633
            +D+D++GLT  GR+V+K P L VEEA+R+QKALLRRH +V++ T+L DV +YVL+  VL  L++ R I S+Q+EL PALVRRQF  P+    + +     R+  +A  A  G              M+ +++  + +P G   A  G+G  GV  V     T   G  YC QA+TLA Y  + ++LL  +  +        +G   KD TL+GEGC +G K T K SV
Sbjct:  158 EDVDFIGLTPDGRVVMKAPLLDVEEAVRVQKALLRRHTSVSIGTSLMDVGLYVLSQSVLQHLEEHRFIGSLQDELAPALVRRQFAPPLPPAPSRTDQARGRISIIAPAASLGHGAPAPVAADYYNDMINKLNIAKGAPGGVAAAGAGDGGGGVCAV--VLRTAADGGGYCRQARTLAQYSGMTKDLLEAQLQAKG--GGRVEGLNRKDQTLIGEGCTVGEKVTCKSSV 381
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9223.17398.1 vs.
Match: NTP_transferase (domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XWU8_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 3.210e-17
Identity = 58/170 (34.12%), Postives = 89/170 (52.35%), Query Frame = 1 
Query:    7 IDYVGLTQS-GRLVIKLPKLFVEEALRIQKALLRRHETVTLSTTLQDVSVYVLAHWVLGFLDDQRAITSVQNELVPALVRRQFKNPITGGETLSKRVGSVAGEALRGDAMVARMSSWRPSPDGDTADPGEGTPGVSEVRCFALTLRHGEAYCSQAKTLAAYCTINRELLT 513
            ID VGL +S  R+ +    + + + + + K+LL+R   V L + L D   Y+ AHWV+  L +++ I S++ +L+P LVRRQF+ P    E       SV  +A+   ++ A +S    + D D             VRCFA TL    AYC +A T+AAY  I+ E+ T
Sbjct:  158 IDCVGLVESESRVALIAQAVHMNDDMYVSKSLLKRRTNVALHSDLYDAHFYIFAHWVIDLLLEKKYIASIKADLIPHLVRRQFRGPAALPE-------SVRAKAVSRQSLAASLSLATQAFDPDDV-----------VRCFAYTLPPN-AYCERADTIAAYRAIDAEVAT 308
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BLAST of mRNA_Ecto-sp9_F_contig9223.17398.1 vs.
Match: Hypothetical (protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0H794_9EUKA)

HSP 1 Score: 85.9 bits (211), Expect = 1.090e-15
Identity = 63/227 (27.75%), Postives = 110/227 (48.46%), Query Frame = 1 
Query:    4 DIDYVGLTQ-SGRLVIKLPKLFVEEALRIQKALLRRHETVTLSTTLQDVSVYVLAHWVLGFLDDQRAITSVQNELVPALVRRQFKNPITGGETLSKRVGS-VAGEALRGDAMVARMSSWRPSPDGDTADPGEGTPGVSEVRCFALTLRHGEAYCSQAKTLAAYCTINRELLTMREFSDK----CPWSMPD-----------GFRPKDSTLVGEGCHLGPKGTLKFSV 633
            + +++GL Q SGR+++   K  VE++L + K LL+ H  +TL + L D  +Y+ +HWV+  +   ++I+S+QNEL+P LV+ QF+ P    E  SK V S V     +G+A+   MSS  P               +  + C +  +     +  +  T+ AY   NRE++ + +   K      + +P+            F      ++G+G  +G K  +K SV
Sbjct:  173 ECNFIGLEQDSGRVLVYTAKADVEDSLSVSKRLLQSHPRMTLHSQLDDAHIYIFSHWVIKVILQDKSISSIQNELIPYLVKAQFRCPEDLKEEKSKAVWSRVDKNFAQGEALG--MSSVPPK-------------SIDSLLCMSY-VPDPSKFSFRVNTVPAYKHANREVVNLHDSEGKPIVESGYVLPEEAKATGKKGKAAFNVGKDCVIGDGVQIGVKTNIKKSV 383
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9223.17398.1 vs.
Match: Uncharacterized (protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BB89_HYAAE)

HSP 1 Score: 77.4 bits (189), Expect = 7.610e-14
Identity = 52/160 (32.50%), Postives = 79/160 (49.38%), Query Frame = 1 
Query:   28 QSGRLVIKLPKLFVEEALRIQKALLRRHETVTLSTTLQDVSVYVLAHWVLGFLDDQRAITSVQNELVPALVRRQFKNPITGGETLSKRVGSVAGEALRGDAMVARMSSWRPSPDGDTADPGEGTPGVSEVRCFALTLRHGEAYCSQAKTLAAYCTINREL 507
            +  R+V+    + + E L + K+LL+R     L T L D   Y+ +HWVL  L +++ I S++ +L+P LVRRQF+    G   L +   SV  +A    A+ A MS      D +             VRCFA  L    AYC +A T+ AY  ++ E+
Sbjct:   38 EENRVVLVSQAVHMNEHLDVAKSLLQRRSHFVLHTDLYDGHFYIFSHWVLDLLQEKKYIASIKADLIPHLVRRQFR----GANVLPE---SVRDKATSKQALAASMSLSEEQHDPEDL-----------VRCFAYVLP-SNAYCERADTIPAYRAMDEEV 178
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9223.17398.1 vs.
Match: NTP_transferase (domain-containing protein n=1 Tax=Lottia gigantea TaxID=225164 RepID=V3ZLT4_LOTGI)

HSP 1 Score: 80.1 bits (196), Expect = 1.090e-13
Identity = 56/214 (26.17%), Postives = 99/214 (46.26%), Query Frame = 1 
Query:   10 DYVGLTQSGRLVIKLP-KLFVEEALRIQKALLRRHETVTLSTTLQDVSVYVLAHWVLGFLDDQRAITSVQNELVPALVRRQFKNPITGGETLSKRVGSVAGEAL----------RGDAMVARMSSWRPSPDGDTADPGEGTPGVSEVRCFALTLRHGEAYCSQAKTLAAYCTINRE----LLTMREFSDKCPWSMPDGFRPKDSTLVGEGCHLG 606
            D++G  ++G+ V+ L  +  +E+ +  QK+ L+RH  + + + L D  +Y+   WV+ FL   + I +++ EL+P LVRRQF+ P      L   V     +              ++ +  +++W    +GD AD   G      VRC+A     G  +C +A TL  Y   NR+    L T+    +    S+      K+ + +G  C +G
Sbjct:  160 DFIGFDENGKRVLFLTSEADLEDTISFQKSTLKRHPFINIRSKLTDCHLYLFKKWVIDFLAQNQKICTIKGELIPYLVRRQFRRPKLPDTDLPGNVSLTQTDTKPDIHDFTSEDSNNSKILELTTWTDH-EGDMADCFHG----ESVRCYAHIQDDG--FCIRANTLGTYIEANRQIPKILSTLSSNKNTSIKSVHPSAIIKEKSQIGSDCIVG 366
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9223.17398.1 vs.
Match: Bacterial (transferase hexapeptide repeat-containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GYW1_ACACA)

HSP 1 Score: 79.3 bits (194), Expect = 2.070e-13
Identity = 69/222 (31.08%), Postives = 106/222 (47.75%), Query Frame = 1 
Query:    7 IDYVGLTQSG-RLVIKLPKLFVEEALRIQKALLRRHETVTLSTTLQDVSVYVLAHWVLGFLDDQRA-ITSVQNELVPALVRRQFKNPITGGETLSKRVGSVAGEALRGDAMVARMSSWRPSPDGDTADPGEGTPGVSEVRCFALTLRHGEAYCSQAKTLAAYCTINRELLTMR------EFSDKCPWSMPDG-FRPKDST----LVGEGCHLGPKGTLKFSV 633
            +DYVGL + G RL+       +E  +RI K LLR++ ++T+ T L D   Y+ +   L  L+ ++  I S++ EL+P LVR QF+   T  +   KR  S A            M+S R     DT D         ++RCFA T+  G  YCS+A T+ +Y  +N ++ +        E   K  +  P     PK       +VGEG  +G + ++K SV
Sbjct:  200 MDYVGLKEDGERLLYFKAAADIENKMRISKKLLRKNYSLTIHTNLVDAHFYIFSKAALAMLEARKEKIVSIKGELIPYLVRCQFRKAFTREDAPIKRPFSKA----------YSMTSARV----DTTD---------KIRCFAYTMEGG--YCSRANTIKSYVQMNLDIASRGACYSPLEPVTKNSYIHPAAVISPKTQVGAECVVGEGTRVGERASIKKSV 396
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9223.17398.1 vs.
Match: NTP_transferase (domain-containing protein n=8 Tax=Peronosporaceae TaxID=4777 RepID=G5AAU1_PHYSP)

HSP 1 Score: 77.4 bits (189), Expect = 4.870e-13
Identity = 50/160 (31.25%), Postives = 78/160 (48.75%), Query Frame = 1 
Query:   28 QSGRLVIKLPKLFVEEALRIQKALLRRHETVTLSTTLQDVSVYVLAHWVLGFLDDQRAITSVQNELVPALVRRQFKNPITGGETLSKRVGSVAGEALRGDAMVARMSSWRPSPDGDTADPGEGTPGVSEVRCFALTLRHGEAYCSQAKTLAAYCTINREL 507
            +  R+V+    + + E L + K+LL+R     L T L D   Y+ +HWVL  L +++ I S++ +LVP LVRRQF+      E++ +R  S         A+ A +S      D +             VRCFA  L    AYC +A T+ AY  ++ E+
Sbjct:  169 EENRVVLVSQAVHMNEDLYVAKSLLKRRSNFVLHTDLYDGHFYIFSHWVLDLLQEKKYIASIKADLVPHLVRRQFRGAAALPESVRERATSK-------QALAASLSLSEEKHDPEDL-----------VRCFAYVLP-SNAYCERADTIPAYKAMDEEV 309
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9223.17398.1 vs.
Match: Uncharacterized (protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RU43_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 5.760e-13
Identity = 51/160 (31.87%), Postives = 79/160 (49.38%), Query Frame = 1 
Query:   28 QSGRLVIKLPKLFVEEALRIQKALLRRHETVTLSTTLQDVSVYVLAHWVLGFLDDQRAITSVQNELVPALVRRQFKNPITGGETLSKRVGSVAGEALRGDAMVARMSSWRPSPDGDTADPGEGTPGVSEVRCFALTLRHGEAYCSQAKTLAAYCTINREL 507
            +  R+V+    + + E L + K+LL+R     L + L D   Y+ +HWVL  L +++ I S++ +LVP LVRRQF+    G + L K   SV  +A     + A +S      D +             VRCFA  L    AYC +A T+ AY  ++ E+
Sbjct:   99 EENRVVLVSQAVHMNEDLYVAKSLLKRRSNFVLHSDLYDAHFYIFSHWVLDLLQEKKYIVSIKADLVPHLVRRQFR----GADALPK---SVREKATCKQELAASLSLAEEKHDPEDL-----------VRCFAYVLPKN-AYCERADTIPAYKAMDEEV 239
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9223.17398.1 vs.
Match: Translation (initiation factor eif-2b subunit n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B3W1_PLAHL)

HSP 1 Score: 76.3 bits (186), Expect = 1.240e-12
Identity = 52/160 (32.50%), Postives = 77/160 (48.12%), Query Frame = 1 
Query:   28 QSGRLVIKLPKLFVEEALRIQKALLRRHETVTLSTTLQDVSVYVLAHWVLGFLDDQRAITSVQNELVPALVRRQFKNPITGGETLSKRVGSVAGEALRGDAMVARMSSWRPSPDGDTADPGEGTPGVSEVRCFALTLRHGEAYCSQAKTLAAYCTINREL 507
            +  R+V+    + + E L + K+LL+R     L T L D   Y  +HWVL  L +++ I+S++ +LVP LVRRQF+    G E L   V   A        + A +S  +   D +             VRCFA  L    AYC +A T+ AY  +N E+
Sbjct:  168 EENRVVVASQAVHMNEDLYVAKSLLKRRSNFVLHTDLYDGHFYFFSHWVLDLLQEKKYISSIKVDLVPHLVRRQFR----GKEALPSNVREKAASKQE---LAASLSLSKEKHDPEDL-----------VRCFAYVLPPN-AYCERADTIPAYRAMNEEV 308
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9223.17398.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Eukaryotic1.560e-14497.16translation initiation factor 2B gamma subunit n=1... [more]
Eukaryotic1.560e-3539.47translation initiation factor 2B gamma subunit n=1... [more]
NTP_transferase3.210e-1734.12domain-containing protein n=1 Tax=Pythium brassicu... [more]
Hypothetical1.090e-1527.75protein n=1 Tax=Amorphochlora amoebiformis TaxID=1... [more]
Uncharacterized7.610e-1432.50protein n=1 Tax=Hyaloperonospora arabidopsidis (st... [more]
NTP_transferase1.090e-1326.17domain-containing protein n=1 Tax=Lottia gigantea ... [more]
Bacterial2.070e-1331.08transferase hexapeptide repeat-containing protein ... [more]
NTP_transferase4.870e-1331.25domain-containing protein n=8 Tax=Peronosporaceae ... [more]
Uncharacterized5.760e-1331.88protein n=2 Tax=Phytophthora kernoviae TaxID=32545... [more]
Translation1.240e-1232.50initiation factor eif-2b subunit n=1 Tax=Plasmopar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9223contigEcto-sp9_F_contig9223:793..5380 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score419.9
Seed ortholog evalue8.2e-115
Seed eggNOG ortholog2880.D8LGC6
Preferred nameEIF2B3
KEGG rclassRC00052,RC00120
KEGG koko:K03241,ko:K10258,ko:K19398
KEGG ReactionR07761,R09449,R10828
KEGG Pathwayko00062,ko01040,ko01110,ko01212,ko03013,map00062,map01040,map01110,map01212,map03013
KEGG ModuleM00415
GOsGO:0001666,GO:0002253,GO:0002376,GO:0002429,GO:0002682,GO:0002684,GO:0002757,GO:0002764,GO:0002768,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005085,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005851,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0006950,GO:0007154,GO:0007165,GO:0007166,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009266,GO:0009408,GO:0009628,GO:0009719,GO:0009725,GO:0009743,GO:0009746,GO:0009749,GO:0009987,GO:0010001,GO:0010033,GO:0010243,GO:0010467,GO:0014003,GO:0019538,GO:0019899,GO:0021537,GO:0021543,GO:0021761,GO:0021766,GO:0021782,GO:0022008,GO:0023052,GO:0030154,GO:0030900,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034284,GO:0034641,GO:0034645,GO:0036293,GO:0036294,GO:0042063,GO:0042221,GO:0043043,GO:0043170,GO:0043434,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0048468,GO:0048513,GO:0048518,GO:0048583,GO:0048584,GO:0048709,GO:0048731,GO:0048856,GO:0048869,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050851,GO:0050852,GO:0050896,GO:0051020,GO:0051716,GO:0060322,GO:0065007,GO:0065009,GO:0070482,GO:0070887,GO:0071453,GO:0071456,GO:0071704,GO:0097159,GO:0098772,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901652,GO:1901698,GO:1901700
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG1208@1,KOG1462@2759
EC1.3.1.93
COG Functional cat.JM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko03012,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptioneukaryotic translation initiation factor 2B gamma subunit
Ec32 orthologEc-06_002600.1
Exons6
Model size717
Cds size717
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9223.17398.1prot_Ecto-sp9_F_contig9223.17398.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9223 793..5380 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930997.4037504-CDS-Ecto-sp9_F_contig9223:792..8971622930997.4037504-CDS-Ecto-sp9_F_contig9223:792..897Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9223 793..897 -
1692278985.9447916-CDS-Ecto-sp9_F_contig9223:792..8971692278985.9447916-CDS-Ecto-sp9_F_contig9223:792..897Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9223 793..897 -
1622930997.42505-CDS-Ecto-sp9_F_contig9223:1364..14721622930997.42505-CDS-Ecto-sp9_F_contig9223:1364..1472Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9223 1365..1472 -
1692278985.9579701-CDS-Ecto-sp9_F_contig9223:1364..14721692278985.9579701-CDS-Ecto-sp9_F_contig9223:1364..1472Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9223 1365..1472 -
1622930997.45721-CDS-Ecto-sp9_F_contig9223:2103..22571622930997.45721-CDS-Ecto-sp9_F_contig9223:2103..2257Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9223 2104..2257 -
1692278985.9684896-CDS-Ecto-sp9_F_contig9223:2103..22571692278985.9684896-CDS-Ecto-sp9_F_contig9223:2103..2257Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9223 2104..2257 -
1622930997.476421-CDS-Ecto-sp9_F_contig9223:3666..38071622930997.476421-CDS-Ecto-sp9_F_contig9223:3666..3807Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9223 3667..3807 -
1692278985.9799235-CDS-Ecto-sp9_F_contig9223:3666..38071692278985.9799235-CDS-Ecto-sp9_F_contig9223:3666..3807Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9223 3667..3807 -
1622930997.4948843-CDS-Ecto-sp9_F_contig9223:4824..49581622930997.4948843-CDS-Ecto-sp9_F_contig9223:4824..4958Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9223 4825..4958 -
1692278985.9911337-CDS-Ecto-sp9_F_contig9223:4824..49581692278985.9911337-CDS-Ecto-sp9_F_contig9223:4824..4958Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9223 4825..4958 -
1622930997.5176425-CDS-Ecto-sp9_F_contig9223:5305..53801622930997.5176425-CDS-Ecto-sp9_F_contig9223:5305..5380Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9223 5306..5380 -
1692278986.0027401-CDS-Ecto-sp9_F_contig9223:5305..53801692278986.0027401-CDS-Ecto-sp9_F_contig9223:5305..5380Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9223 5306..5380 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9223.17398.1

>prot_Ecto-sp9_F_contig9223.17398.1 ID=prot_Ecto-sp9_F_contig9223.17398.1|Name=mRNA_Ecto-sp9_F_contig9223.17398.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=239bp
QDIDYVGLTQSGRLVIKLPKLFVEEALRIQKALLRRHETVTLSTTLQDVS
VYVLAHWVLGFLDDQRAITSVQNELVPALVRRQFKNPITGGETLSKRVGS
VAGEALRGDAMVARMSSWRPSPDGDTADPGEGTPGVSEVRCFALTLRHGE
AYCSQAKTLAAYCTINRELLTMREFSDKCPWSMPDGFRPKDSTLVGEGCH
LGPKGTLKFSVIGQACKIGEKAKINNCIIMDGVTIGDK*
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mRNA from alignment at Ecto-sp9_F_contig9223:793..5380-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9223.17398.1 ID=mRNA_Ecto-sp9_F_contig9223.17398.1|Name=mRNA_Ecto-sp9_F_contig9223.17398.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4588bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9223:793..5380- (Ectocarpus species9 EcSCA_722f female)
CAGGACATCGACTACGTGGGGCTTACTCAGAGCGGACGATTAGTCATCAA
GCTGCCGAAATTGTTCGTGGAAGAGGTGAGCTCAGGCCGGGCTACAAACC
ATATAGCTCCACCTCCCTTTACAGAGTTGCATCGATGCTCGCTTGACGCT
TCGGGTGTACGGGTTGGGGTACAAGCTCCCTCCCTACACAGAGCTGGGTG
GTGCACAGTGTTCGTAAAGCGTTGGTCCGGCTACACCGTCTGCCTCCCGG
GGGACGTTGCTTAGGCGGAGGCGTTTTAATGACACTCGCACGGTGAACGA
TTGGCCATCGGCGACCAGTCTCTTGGGAACAACAACGCTCCGTCCTCTCG
AGGACGCGTGGTCGATGATCTGTAGCTAAGACACGCAAAACATGGGTACC
TCTCCCCCCGGCCCTTGCCCAGGCGTTGCGCATCCAAAAGGCGTTGCTCC
GTCGCCACGAAACGGTGACGCTCAGCACTACCCTGCAAGATGTGAGCGTG
TACGTGTTGGCGCATTGGGTCTTGGGATTCCTGGACGATCAAAGAGCTAT
CACGAGGTACAGTATGGCGACAGGAGGGTGTGCGAACGAAAGAGGCAGGC
GACGTGTTTGTGTGTATGATTTATTAGGCAGCATCGATCGCGCTATAACC
GGCTGACCAATGAAAAGACTTCAGTCTCAGTGCGGTTGCAAACACAGAAT
TCTTCTCAAGGCCTCGATCTGGGACCTTGTGAGGGGACATCATGGGGGAG
TCTAAGCTACACTCCGGATTATAGACAGATACCGTAGCAATAGCAGAAGA
AAACGGCAAAAAAACATGTTTGTGTGTCTGTGCACAGACGACGATCTACC
AAACAGCGGTAGCAGCAGCACGGCGGATTAGACGGCGGTGGGTGGTTTGT
GTCCGAAGGAGGGCTTTTGTCACCCATGTGTTGTGTTGGATGTTTGTCGG
TGTAAACAGCAGCAACGCAGCAGGTGAGACAGGCGGAGGAGGATGGTTGG
CACCCGCTTGTTGAGTGTTTTTGTTTTTCGGCAGCGAGCAAGTATAAGCG
ATTTCTGGTGTGCGTGCGTGAGCTCTTGGTGTGTGCTTGCCGCTCTCCGG
GGGGACGACATAGATTGTATGGCGTTGGCGTGGTGGTACAAGCAACCAGG
GTACTCCACGTGCAAGCCTTCTCTCGAGATGCGATTGGGAAGACTTGTGG
AGTGGGTATTCAAGGCCAGTAGGGTGCGTCCGAAGGCTTTCTTCCCGTGT
TGTTGTTGTCGTTCTCTCGTTCCGTGTCGGACAGGCGTGTCGGACGTGCC
GCCATGAGTGGGAAAGTGGCGAGATTTCCGTGGTTCCGCCGCTCTTTTCC
TCCCGGAGGCGCGCGCTTTCGTTCTGTGGCCGCTGCTGCTGTTACGAATG
ACGATGGCGGTGCTTGTCTTATCGGTGATGTCTTTGTCGCCGTTGGGTGC
TGTTGGTGCACTTTCTCCACACCAAGCCATCAGCAATCATTTCTTCGACC
GCTGTGTCGTACTTCAAGTACTTTCTTCAAAAAAATAAAAACGAACCGTG
TTCTTGTTGTTCTTCTTCGCCAGCGTTCAGAACGAGCTGGTGCCCGCCCT
CGTGAGGAGACAGTTCAAAAACCCCATCACGGGGGGTGAGACCCTATCCA
AGCGCGTTGGTTCGGTTGCGGGAGAGGCTCTGCGAGGTGATGCGATGGTC
GCTCGCATGAGCAGGTGAGCGAAAGAGTAAAGATAAATCAGAGAATTTCA
TGGTAGCGAGAACTGAGTGCGAGACCAAGAGGAGTGGGGGGGGCGGGGAA
AGGGGCCGGCCCACTCTACACACCGCCGCAGTACTTCGAGCTACAAGTAA
TCAATGAAGGAGTGTTGCTGTCGTTTGTTGCTGTTGCGTGTCACGTTTGC
TCGTCATAGCATCGTAAGCCGGAAGGGTAGAAACAGTACTCATACTCATT
GATGCTGAGGGCGGGGGAAAAACTGTCGTATGTTTTGCTTTGTTTGGCGA
GACGCAGGCAGGACGAGCTCCTCTCCCATCTCAAGATCCTTCAAATTGAA
AGTTGCACGTGGAAAGTTACAGTTACATGTATGAGCTGACGGCCCCGGAC
ACGTCCTCCGCAACTTGTTTCTTGCATATATATCGCGCCAACAGCTTAGA
ATGTGTTCGAATCTAATGTTCTAATTATTTCCATCTCTTTCCGGTGTAGC
TGCTGAACAAGCCTAACCCACGTGTTTTTTTTTTTCTTTTCCCTTGCCGT
ACCTCTTGGACCAACCTGCCAACACATAATAGAAGCGTGTACAACACCGA
GCAACAGCACAGCACCAACACAACACAACACAACACAAACGACACGCAAG
ACGAGAACGTTTAGGGTCCTGTTGTTAACCAGACCGCATCGACCACCATC
ATCGCAGCTTCGCACGCCCGCATCATCCCCCGAACAAAAAAAAAAGTGAT
TTTTACCGCCTCCCTTCTCTTTGGCCGTTTCAAAACGACAAAAGTGTTTT
TACAGTCGTGGTCCCGGTTTAGCGGTTCCCTGTTTGACGGGATGCCCTGA
ATAGCGGTCCCACTATCTCGTGGCACCGCTGCACCTCGGTAGTCAAAACT
GTATAGCTACTGTAGCGGCGATGCCCTAAATAGCGGCTACAACAATTTGT
GACACTATGGACCGCTAAACCGGGACCACGACTGTAGCTGGAGGCCCACG
CAGCACCTGAGTAAGAGCGTGTTTCAACGCATCCGTGATCTTGATTGCCG
CTCCGAAACGACCAAAAGTAACAACATAAGTTGGAGGCCGAAGCCGGAAA
GCAAAACGTGTTCTGCAGCAGCACCGCCTCCGTTCTCTCGGCCGTTTCGA
AACCAAACCAAAAATGTTTTTTTTTTTTTTATGCTGCTGGAGGCCTAGCC
CCGATCGAGCGCGCCCGCAACATCCCTCGATAGCATTGTTTCTTCTCTCT
CTCGGCCGTTTCAAAAAGACAAGAATGGTTTTATATAGCTGCAGGCGTAC
TGCAGCCCCGATGATGAAGCGCGCCCGCATCGTCCCTCGAAAAAATACGT
CGAAGTAACATGTTTACATTATAGATAACGCCTCCGTTATCTTGTCCGTT
TCAAAATGGAAAAAAAAAAAAAGCTGGAGGCCTAGTCCCGATGGCGACAC
GGCGGACCCGGGAGAAGGCACGCCCGGCGTGAGCGAGGTTCGGTGCTTCG
CCCTGACTTTGAGGCACGGAGAGGCCTACTGCTCGCAGGCCAAGACTTTG
GCGGCCTACTGCACCATTAACAGGGAGGTGCGATGCGATGCGCAAGAGCG
CTTTTTGGGTGGGTGGGTGGGTGGGTGGGGGCGGGGGCGTACTCATGTTT
TCCACGATTTATTTCACGTTGAATAGGTTGCCACCCGGTGTGGTATTGGA
CGCTGTCGTGTGATGCAGGCGTGGCTTTCTTGCGGTGGTAAGCTAGTCGC
TGCGGCGTGATGTGATGTGGTGTGGTCGGGTTTGGCGTGCGCCCGAGCGT
CCTGCGACCAATACTTCGTTCTGGCCTACCCGGATGACGTTTCTGGACGC
GAGTCACGTGTTCGTCTGACCAATGAAAAGACGTTTGTGTGTATGTCAGC
ATCGACCTTGCTAACCGGGTGACCAGTGAAAAAGACGTCAGTCTCAGTAC
GGCTGAAAACAGAAACCGCTTCTTAAGGTCATGTGTGACCTGGTCGTTGT
AGCTGATCCACCGTAACCTGACCGCTGCGCGACCCTGATGAACTTAACCT
TACATGGGTGTATATCGGGCGGGTGCCAAAACGAATATCTCTACCTCAAG
CGTGTGTGTGACCTGATCGTTGTAGCTGATCCACGTGATCTGAACCCCGC
GCGACAAACACATGGCATGTGATGTGATGGACGGCGTGTGTACCACTCCC
GAGAGCAGCTGTTGACCATGAGGGAGTTCTCGGACAAGTGCCCGTGGAGC
ATGCCGGACGGCTTCCGCCCCAAAGACTCCACCCTCGTGGGCGAGGGCTG
CCACTTGGGGCCGAAGGTGAGAACTAAATAACAAGCACCCAGGCTTGGGG
GTTGTTGTACTTTCGTAAAACGCATGCCGTAGTCGCTGGACCATAGACCT
CGCAGCCCCTACATACAACGCCGGGACGCGGAGCGATATGCCGGATCAGC
AAATTGTGGTTCTTGTTCCGTGGTGTATCGTGACGGAGGTTGTGCTCCTT
GTTCTTAGAATCGTGATCTTATTTCTTGCCGGATCTACTCACCGGTGTGT
CGTGGTATGCAGATTTCTTCGCGCGGCACGACCCGACCCCCTGTTGACCA
CGAGGCTTGATTTGGCCAGCCGGGGGGACACAAGTGTACTGCTGTGGCGT
TTTTTCTTTGGTTGCGCGTGTTTGATCGAGGTTTGGGAGTGTTTACTTGA
GGCAAAAGCGTGACGTGCATTTGCGTCCTTCCTTCACCGGTTGCTGTCGT
CGTCGTTGTCGTCATTTGTCGTGCTCTTCGCAGGGAACCCTCAAGTTCTC
GGTGATCGGCCAGGCGTGCAAGATCGGCGAGAAGGCCAAGATCAACAACT
GCATCATCATGGATGGCGTCACCATCGGGGACAAGTAA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9223:793..5380-

>mRNA_Ecto-sp9_F_contig9223.17398.1 ID=mRNA_Ecto-sp9_F_contig9223.17398.1|Name=mRNA_Ecto-sp9_F_contig9223.17398.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1434bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9223:793..5380- (Ectocarpus species9 EcSCA_722f female)
CAGGACATCGACTACGTGGGGCTTACTCAGAGCGGACGATTAGTCATCAA
GCTGCCGAAATTGTTCGTGGAAGAGCAGGACATCGACTACGTGGGGCTTA
CTCAGAGCGGACGATTAGTCATCAAGCTGCCGAAATTGTTCGTGGAAGAG
GCGTTGCGCATCCAAAAGGCGTTGCTCCGTCGCCACGAAACGGTGACGCT
CAGCACTACCCTGCAAGATGTGAGCGTGTACGTGTTGGCGCATTGGGTCT
TGGGATTCCTGGACGATCAAAGAGCTATCACGAGGCGTTGCGCATCCAAA
AGGCGTTGCTCCGTCGCCACGAAACGGTGACGCTCAGCACTACCCTGCAA
GATGTGAGCGTGTACGTGTTGGCGCATTGGGTCTTGGGATTCCTGGACGA
TCAAAGAGCTATCACGAGCGTTCAGAACGAGCTGGTGCCCGCCCTCGTGA
GGAGACAGTTCAAAAACCCCATCACGGGGGGTGAGACCCTATCCAAGCGC
GTTGGTTCGGTTGCGGGAGAGGCTCTGCGAGGTGATGCGATGGTCGCTCG
CATGAGCAGCGTTCAGAACGAGCTGGTGCCCGCCCTCGTGAGGAGACAGT
TCAAAAACCCCATCACGGGGGGTGAGACCCTATCCAAGCGCGTTGGTTCG
GTTGCGGGAGAGGCTCTGCGAGGTGATGCGATGGTCGCTCGCATGAGCAG
CTGGAGGCCTAGTCCCGATGGCGACACGGCGGACCCGGGAGAAGGCACGC
CCGGCGTGAGCGAGGTTCGGTGCTTCGCCCTGACTTTGAGGCACGGAGAG
GCCTACTGCTCGCAGGCCAAGACTTTGGCGGCCTACTGCACCATTAACAG
GGAGCTGGAGGCCTAGTCCCGATGGCGACACGGCGGACCCGGGAGAAGGC
ACGCCCGGCGTGAGCGAGGTTCGGTGCTTCGCCCTGACTTTGAGGCACGG
AGAGGCCTACTGCTCGCAGGCCAAGACTTTGGCGGCCTACTGCACCATTA
ACAGGGAGCTGTTGACCATGAGGGAGTTCTCGGACAAGTGCCCGTGGAGC
ATGCCGGACGGCTTCCGCCCCAAAGACTCCACCCTCGTGGGCGAGGGCTG
CCACTTGGGGCCGAAGCTGTTGACCATGAGGGAGTTCTCGGACAAGTGCC
CGTGGAGCATGCCGGACGGCTTCCGCCCCAAAGACTCCACCCTCGTGGGC
GAGGGCTGCCACTTGGGGCCGAAGGGAACCCTCAAGTTCTCGGTGATCGG
CCAGGCGTGCAAGATCGGCGAGAAGGCCAAGATCAACAACTGCATCATCA
TGGATGGCGTCACCATCGGGGACAAGTAAGGAACCCTCAAGTTCTCGGTG
ATCGGCCAGGCGTGCAAGATCGGCGAGAAGGCCAAGATCAACAACTGCAT
CATCATGGATGGCGTCACCATCGGGGACAAGTAA
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