mRNA_Ecto-sp9_F_contig9221.17397.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9221.17397.1
Unique NamemRNA_Ecto-sp9_F_contig9221.17397.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig9221.17397.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHP2_ECTSI)

HSP 1 Score: 776 bits (2005), Expect = 1.310e-265
Identity = 565/627 (90.11%), Postives = 570/627 (90.91%), Query Frame = 1
Query:    1 RFTHTKSDMPSGFSMKLRKHIRTQRLEDVRQVGMDRVVDFKFGSGKASNHVILELYASGNIILTDSKYEILDLLRTHIYEGQGGGAXXXXXX-GGAGDNVRVAVRQIYPMELATTQEGTTAVPQ---PXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAPEDQQREAEAPGAFVNGTPLEVGVRRMSEWLERSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------PKKATLKQALMQKGSGVSVYGPSIIEHCVLAAGLRPNAKLTPDGGSGGVHGXXXXXXXXXXXXXXXXAAECSGNGGELRAGLSEDEVRELVVALGGAEAIVQQLDRPGQRGYIQCKPLPXXXXXXXXXXXXXGGSPADGERKGSKXXXXXXXXXXXXXXXXXE------GERKVKQGDAEEGGDHVVYEEFLPQLLAQHEGGAVIHSFASFDQAVDAFFGRIVEQKLKQTAIAAEAAVERKVAWIRNDQERRVLALEERQEKMLRHAQLAEAWADEVEKALMVVRSALANGMDWQDLEDLVKAETANGNPIASLIHELRLDRNQASVVLSLPTAEDGEDDQLVEVDIMLSAHANARVMYENKKLARAKELKTLT 1821
            +FTHTKSDMPSGFSMKLRKHIRTQRLEDVRQVGMDRVVDFKFGSGKASNHVILELYASGNIILTDSKYEILDLLRTHIYEGQGGGA       GGAGDNVRVAVRQIYPMELATTQEGTTAVPQ    XXXXXXXXXXXXXXXXXXXXXXX    VAAPEDQQRE EAPGAFVNGTPLEVGVRRMSEWLER+AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          PKKATLKQALMQKGSGVSVYGPSIIEHCVLAAGLRPNAKLTPDG SGGVH  XXXXXXXXXXXXX     CSGNGGELRAGLSED+VRELVVALGGAEAIVQQLDRPGQRGYIQCKPLPXXXXXXXXXXXXX             XXXXXXXXXXXXXXXXX       GERKVKQG+ EEGGDHVVYEEFLPQLLAQHEGGAVIHSFASFDQAVDAFFGRIVEQKLKQTA+AAEAAVERKVAWIRNDQERRVLALEERQEKMLRHAQLAEAWADEVEKALMVVRSALANGMDWQDLEDLVKAETANGNPIASLIHELRLDRNQ  VVLSLPTAEDGEDDQLVEVDIMLSAHANARVMYENKKLARAKELKTLT
Sbjct:   14 KFTHTKSDMPSGFSMKLRKHIRTQRLEDVRQVGMDRVVDFKFGSGKASNHVILELYASGNIILTDSKYEILDLLRTHIYEGQGGGAAGGSGATGGAGDNVRVAVRQIYPMELATTQEGTTAVPQLPXXXXXXXXXXXXXXXXXXXXXXXXXRYGRVAAPEDQQREEEAPGAFVNGTPLEVGVRRMSEWLERAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKKATLKQALMQKGSGVSVYGPSIIEHCVLAAGLRPNAKLTPDGSSGGVHAAXXXXXXXXXXXXX-----CSGNGGELRAGLSEDDVRELVVALGGAEAIVQQLDRPGQRGYIQCKPLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGERKVKQGETEEGGDHVVYEEFLPQLLAQHEGGAVIHSFASFDQAVDAFFGRIVEQKLKQTAMAAEAAVERKVAWIRNDQERRVLALEERQEKMLRHAQLAEAWADEVEKALMVVRSALANGMDWQDLEDLVKAETANGNPIASLIHELRLDRNQ--VVLSLPTAEDGEDDQLVEVDIMLSAHANARVMYENKKLARAKELKTLT 633          
BLAST of mRNA_Ecto-sp9_F_contig9221.17397.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCK8_9STRA)

HSP 1 Score: 267 bits (682), Expect = 1.350e-73
Identity = 251/665 (37.74%), Postives = 306/665 (46.02%), Query Frame = 1
Query:    1 RFTHTKSDMPSGFSMKLRKHIRTQRLEDVRQVGMDRVVDFKFGSGKASNHVILELYASGNIILTDSKYEILDLLRTHIYEGQGGGAXXXXXXGGAGDNVRVAVRQIYPMELATTQEG--TTAVPQPXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAPEDQQREAEAPGAFVNGTPLEVGVRRMSEWLERSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKKATLKQALMQKGSGVSVYGPSIIEHCVLAAGLRPNAKLTPDGGSGGVHGXXXXXXXXXXXXXXXXAAECSGNGGELRAGLSEDEVRELVVALGGAEAIVQQLDRPGQRGYIQCKPLPXXXXXXXXXXXXXGGSPADGERKGSKXXXXXXXXXXXXXXXXXEGERKVKQGDAEEGGDHVVYEEFLPQLLAQH-------------------EGGAVI-------------HSFASFDQAVDAFFGRIVEQKLKQTAIAAEAAVERKVAW----------------IRNDQERRVLALEERQEKMLRHAQLAEAWADEVEKALMVVRSALANGMDWQDLEDLVKAETANGNPIASLIHELRLDRNQASVVLSLPTAEDGEDDQLVE---------VDIMLSAHANARVMYENKKLARAKELKTL 1818
            RF+H KSDMPS FSMKLRKHI+ +RLED+RQ+  DRVVDFKFGSG A+ H+ILELYASGNIILTDSKYE+L LLRTH Y                G +  VAVRQIYP+  AT Q+G  T A   P                             A                                RS+          XXXXXXXXXXXXXX        XXXXXXXXXXXXXXXXX   K TL+Q LM+KGS +SV+GPS+++HCVL AGLRP  ++ PD  S                                   LSE E+  LV AL GA  +  +LDRPGQ GYI                                                       +QG  E+GG+  VY+EFLP LLAQH                   E G+                +F SFD+AVD FFG++ EQ+L+  A   EA+   +V                  +R+D E R   L+  Q +M+             E AL V+RSAL+ GM W  LE+LVK ET  GNPIASLIH+L+LD +     L+LP     E+++ VE         VD+  SAHANAR MYE KK    K  +T+
Sbjct:   63 RFSHDKSDMPSAFSMKLRKHIKAKRLEDIRQLAFDRVVDFKFGSGDAACHIILELYASGNIILTDSKYEVLQLLRTHSY----------------GADALVAVRQIYPVAHATAQDGGRTEAEEGPLSSAAALRAWMKENMAQIVAEADAAQEAKAXXXXXXXXXXTXXXXXXXXXXXXXXXXXXXXXRSSGQAAKGGKTAXXXXXXXXXXXXXXAAIAGKAPXXXXXXXXXXXXXXXXX--SKVTLRQLLMRKGSTLSVHGPSVVDHCVLVAGLRPGLRVPPDVSS-----------------------------------LSEGEMEGLVAALRGAAGVAAELDRPGQEGYILY----------------------------------------------------TEQG--EKGGE--VYDEFLPHLLAQHAAAAQTLTKAADGEPAAATEAGSTAXXXXXXXXXXLKARAFPSFDEAVDEFFGKVQEQRLRAAAAXXEASAAARVQKSLRXXXXXXXXXXXXKVRDDLEARTKDLQAGQARMMXXXXXXXXXXXXXEAALTVIRSALSTGMSWSALEELVKTETQAGNPIASLIHKLKLDLDPPRAALALPVPPGMEEEESVEEGGGVFYVDVDVTQSAHANARAMYEAKKRFDEKATRTI 618          
BLAST of mRNA_Ecto-sp9_F_contig9221.17397.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1AHC6_9STRA)

HSP 1 Score: 219 bits (557), Expect = 3.320e-57
Identity = 183/615 (29.76%), Postives = 260/615 (42.28%), Query Frame = 1
Query:    4 FTHTKSDMPSGFSMKLRKHIRTQRLEDVRQVGMDRVVDFKFGSGKASNHVILELYASGNIILTDSKYEILDLLRTHIYEGQGGGAXXXXXXGGAGDNVRVAVRQIYPMELATTQEGTTAVPQPXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAPEDQQREAEAPGAFVNGTPLEVGVRRMSEWLERSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKKATLKQALMQKGSGVSVYGPSIIEHCVLAAGLRPNAKLTPDGGSGGVHGXXXXXXXXXXXXXXXXAAECSGNGGELRAGLSEDEVRELVVALGGAEAIVQQLDRPGQRGYIQCKPLPXXXXXXXXXXXXXGGSPADGERKGSKXXXXXXXXXXXXXXXXXEGERKVKQGDAEEGGDHVVYEEFLPQLLAQHEGGAV------IHSFASFDQAVDAFFGRIVEQKLKQTAIAAEAAVERKVAWIRNDQERRVLALEERQEKMLRHAQLAEAWADEVEKALMVVRSALANGMDWQDLEDLVKAETANGNPIASLIHELRLDRNQASVVLSLPTAEDGEDDQ---LVEVDIML--SAHANARVMYENKKLARAKELKT 1815
            +   K+DMPSGFSMKLRKHIR +RLE++ Q+G+DRVVDF+FGSG   +H+ILE+YA+GNIILTD  Y IL +LR+H ++                +    AV Q+YP+  ATT                                        P  Q+   ++   F+        V  +SE   +S                                                    +K TLKQ LM +GSG++ YG  II+HC+L AGL PN K+  D                                      L+  + + LV ++G   A+   LD PGQ GYI                                                          +A +G    VYE+ +P  LAQH  G+       I  F S+D+A D +F ++ EQKL   A AAE  ++ +V  IR +Q++R+  LE  +    R A+L E  A++++K + V+RSAL +GM W +L+D + A+   GNP A ++H L+L   +A V+L     ED E+D     V VDI L  SAHANAR M+   K+ + K  KT
Sbjct:   65 YARDKADMPSGFSMKLRKHIRAKRLENIAQLGIDRVVDFRFGSGTECHHIILEMYAAGNIILTDHSYSILAVLRSHKFD----------------ETASTAVNQLYPIAHATTLAAAAG----------------------GGEADGEGGTTGPLTQESSPDSLREFIRAQ-----VAAVSEAGTKS-------------------------------------------------NKARKLTLKQVLMTRGSGMAQYGIDIIQHCILTAGLNPNMKMNAD-----------------------------------TPLLTTSQAQALVSSIGEGGAVFATLDVPGQPGYIV-----------------------------------------------------QSLREASDGKRVPVYEDAVPFTLAQHTAGSGGDASERILEFESYDRAADEYFCKVEEQKLVAAADAAERGIKNRVEKIRANQQQRLDELERTEAATHRKAELTEFLAEDIDKVITVLRSALDSGMAWDELQDYISAQQDLGNPYALMVHALKLTEGKAVVLL-----EDHEEDMSAAAVAVDIALDRSAHANARDMFAALKVTQKKRAKT 494          
BLAST of mRNA_Ecto-sp9_F_contig9221.17397.1 vs.
Match: NFACT-R_1 (domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IPU9_KLENI)

HSP 1 Score: 206 bits (524), Expect = 5.340e-54
Identity = 201/621 (32.37%), Postives = 280/621 (45.09%), Query Frame = 1
Query:    1 RFTHTKSDMPSGFSMKLRKHIRTQRLEDVRQVGMDRVVDFKFGSGKASNHVILELYASGNIILTDSKYEILDLLRTHIYEGQGGGAXXXXXXGGAGDNVRVAVRQIYPMELATTQEGTTAVPQPXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAPEDQ--QREAEAPGAFVNGTPLEVGVRRMSEWLERSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKKATLKQALMQKGSGVSVYGPSIIEHCVLAAGLRPNAKLTPDGGSGGVHGXXXXXXXXXXXXXXXXAAECSGNGGELRAGLSEDEVRELVVALGGAEAIVQQLDRPGQRGYIQCKPLPXXXXXXXXXXXXXG-------GSPADGERKGSKXXXXXXXXXXXXXXXXXEGERKVKQGDAEEGGDHV-VYEEFLPQLLAQHEGGAVIHSFASFDQAVDAFFGRIVEQKLKQTAIAAEAAVERKVAWIRNDQERRVLALEERQEKMLRHAQLAEAWADEVEKALMVVRSALANGMDWQDLEDLVKAETANGNPIASLIHELRLDRNQASVVLSLPTAEDGEDDQL-----VEVDIMLSAHANARVMYENKKLARAKELKTL 1818
            +F   KS+ PSG ++K+RKHIRT+RLED+RQ+G+DRV+DF+FG G  ++H+I ELYASGNI+LTD+ Y +L LLR+H  + +G               + +  +  YP+E       TT                                 AA E    Q E E     V+GT             +R  XXXXXXXXXXXXXXX                                       TLK  L Q    V  YGP++ EHC+L AGL P++++   GG                                    LSE +V EL+ A+   E  ++        G+I  +  P             G       GS A  E    +                 E   + K  D  +    V +Y+EF P LL QH G   +  F +FD A+D FF ++  QKL+Q     E A   ++  I+ DQ  RV AL+   E+ +R A+L E   DEV+ A+  VRSALANGMDW DL+ +VK E   GNP+A LIH ++L++NQ +++LS    +  E+++      VEVDI LSA ANAR+ ++ KK    K+ KT+
Sbjct:   70 QFARDKSNTPSGITLKIRKHIRTRRLEDIRQLGVDRVIDFQFGLGDQAHHLIFELYASGNILLTDAVYNVLTLLRSHRDDEKG---------------ISMMAKHRYPIETCRPFHRTTL----------------------------EQITAALEGAGAQNETEGRSDKVDGTGTGEXXXXXXXXGDRKXXXXXXXXXXXXXXXXP--------------------------------------TLKDVLGQ----VLGYGPTLCEHCILDAGLIPSSRVLERGGK-----------------------------------LSEAQVGELLAAVARFEDWLEPTREKPSEGFIVFQ-RPKAPSAVVVNAEKRGKXXXXXKGSAAVAEDVAPEPEQKEPLKATTDTAAPSEASAEGKPADGVKADGPVKLYDEFTPLLLKQHVGREWVR-FETFDAAMDEFFSKVEGQKLEQQQKQQEVAALSRLDKIKADQSNRVQALQATVEQSVRKAELIEYNLDEVDSAIGAVRSALANGMDWADLKQMVKEERKAGNPVAGLIHSMQLEKNQITLLLSNNLDDMVEEEKTRPVDKVEVDISLSAFANARLHFDTKKKHAIKQQKTV 568          
BLAST of mRNA_Ecto-sp9_F_contig9221.17397.1 vs.
Match: NFACT-R_1 (domain-containing protein (Fragment) n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397D1T8_9STRA)

HSP 1 Score: 200 bits (508), Expect = 5.180e-53
Identity = 177/604 (29.30%), Postives = 250/604 (41.39%), Query Frame = 1
Query:   13 TKSDMPSGFSMKLRKHIRTQRLEDVRQVGMDRVVDFKFGSGKASNHVILELYASGNIILTDSKYEILDLLRTHIYEGQGGGAXXXXXXGGAGDNVRVAVRQIYPME--LATTQEGTTAVPQPXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAPEDQQREAEAPGAFVNGTPLEVGVRRMSEWLERSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKKATLKQALMQKGSGVSVYGPSIIEHCVLAAGLRPNAKLTPDGGSGGVHGXXXXXXXXXXXXXXXXAAECSGNGGELRAGLSEDEVRELVVALGGAEAIVQQLDRPGQRGYIQCKPLPXXXXXXXXXXXXXGGSPADGERKGSKXXXXXXXXXXXXXXXXXEGERKVKQGDAEEGGDHVVYEEFLPQLLAQHEGGAVIHSFASFDQAVDAFFGRIVEQKLKQTAIAAEAAVERKVAWIRNDQERRVLALEERQEKMLRHAQLAEAWADEVEKALMVVRSALANGMDWQDLEDLVKAETANGNPIASLIHELRLDRNQASVVLSLPTAEDGEDDQLVEVDIMLSAHANARVMYENKKLARAKELKTL 1818
            T S +P  F+MKLRKH+R +RL  V Q G DRV+DF FG G   +H+ILELYA+GNIILTD  Y IL LLRTH Y+                D V+VAV+Q YP++  L     G T+                                               F +G  L + V+R   +++ +A                                                   K+ +LKQ L+ K SG   +GP+I+EHC++ AG+ P+ K+     +  VH                               LS+ E + LV +L  A  ++++L       +                     G+   G+                                  +G  H  +EEF P L AQH G  ++  F +FDQAVD +F +I  Q +      A    E KV  ++  Q  ++ A E  Q+    HA L E    ++E  L+VVRSALA GMDW DL+DL+K E  NGNP+A+LIH+L L +N+ SV+L    AE+      + +D+ LSA ANAR +Y  KK A  K LK +
Sbjct:   65 TASALPLQFTMKLRKHLRGKRLASVTQCGSDRVIDFCFGDGDQRHHLILELYAAGNIILTDHAYTILSLLRTHAYD----------------DQVKVAVKQQYPLDNDLVVGNVGGTS---------------------------------------------SQFSSGADLMLFVQR---YVQEAASKEKSK---------------------------------------------KQYSLKQILLSKESGYGNFGPTIVEHCMVEAGVLPSLKVKT--ATSHVH-----------------------------VPLSDAEAQALVDSLRSAPTLLEELSSTQVAVH---------------------GTDVAGDTSRRHGFIVV------------------------DGAGH--FEEFTPYLYAQHRGKPIVE-FHTFDQAVDEYFSKIEAQAVDAEKKQAAHVAETKVDKLKKHQLEQMEAFERTQQVAAAHASLVEQNQHDIENVLLVVRSALATGMDWNDLDDLIKQEQHNGNPVATLIHKLDLSQNRLSVLLCDQEAEEDAVAHCISIDLSLSALANARELYSKKKSAVKKALKAI 480          
BLAST of mRNA_Ecto-sp9_F_contig9221.17397.1 vs.
Match: Aste57867_21883 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LK22_9STRA)

HSP 1 Score: 205 bits (522), Expect = 9.060e-53
Identity = 176/606 (29.04%), Postives = 242/606 (39.93%), Query Frame = 1
Query:   13 TKSDMPSGFSMKLRKHIRTQRLEDVRQVGMDRVVDFKFGSGKASNHVILELYASGNIILTDSKYEILDLLRTHIYEGQGGGAXXXXXXGGAGDNVRVAVRQIYPMELATTQEGTTAVPQPXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAPEDQQREAEAPGAFVNGTPLEVGVRRMSEWLERSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKKATLKQALMQKGSGVSVYGPSIIEHCVLAAGLRPNAKLTPDGGSGGVHGXXXXXXXXXXXXXXXXAAECSGNGGELRAGLSEDEVRELVVALGGAEAIVQQLDRPGQRGYIQCKPLPXXXXXXXXXXXXXGGSPADGERKGSKXXXXXXXXXXXXXXXXXEGERKVKQGDAEEG----GDHVVYEEFLPQLLAQHEGGAVIHSFASFDQAVDAFFGRIVEQKLKQTAIAAEAAVERKVAWIRNDQERRVLALEERQEKMLRHAQLAEAWADEVEKALMVVRSALANGMDWQDLEDLVKAETANGNPIASLIHELRLDRNQASVVLSLPTAEDGEDDQLVEVDIMLSAHANARVMYENKKLARAKELKTL 1818
            T S +P  F+MKLRKH+R +RL  V Q   DRV+DF FG G   +H+ILELYA+GNIILTD KY IL LLRTH Y+ Q                V+VAV+QIYP++       T                                             A   F  G  L   +++  + +                                                       K+ +LKQ LM K SG   +GP+I+EHC++ AG+ P+ K+     +  VH                               LS +E + LV +L  A A++++L                                                           GE       +  G     DH  ++EF P L AQH G A I  F +FDQAVD FF +I  Q  +     A    E KV  ++  Q+ ++ A    QE  +  A L E    ++E  L+V+RSALA+GMDW DL+DL+K E  NGNP+A+LIH+L L +N+  V+L    A+D      V +D+ LSA ANAR +Y  KK A  K  K +
Sbjct:   69 TASALPLQFTMKLRKHLRGKRLASVTQCASDRVIDFCFGDGDQRHHLILELYAAGNIILTDDKYTILSLLRTHAYDEQ----------------VKVAVKQIYPIDNELVVGNT---------------------------------------------ATSLFATGDDLSTFIQQYVQDIASKEKSK------------------------------------------------KQYSLKQILMSKESGYGAFGPTIVEHCMVEAGISPSLKVKT--ATSNVH-----------------------------VPLSPEEAQTLVDSLKAAPALLEELSA---------------------------------------------------NQVVVHGEHSDANDTSRHGFIVLNDHGHFDEFTPYLYAQHRGKA-IQEFHTFDQAVDEFFSKIEAQAAEAEKKQAAQVAETKVDKLKKHQQEQMAAFRRTQEDAVAQATLVEQNQQDIENVLLVIRSALASGMDWTDLDDLIKQEQHNGNPVATLIHKLDLAQNRVHVLLCDVDADDEAIAHCVAIDLSLSALANARELYSKKKTAVKKAQKAI 482          
BLAST of mRNA_Ecto-sp9_F_contig9221.17397.1 vs.
Match: NFACT-R_1 (domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CTN6_9STRA)

HSP 1 Score: 204 bits (520), Expect = 1.280e-52
Identity = 197/652 (30.21%), Postives = 268/652 (41.10%), Query Frame = 1
Query:   22 DMPSGFSMKLRKHIRTQRLEDVRQVGMDRVVDFKFGSGKASNHVILELYASGNIILTDSKYEILDLLRTHIYE------------GQGGGAXXXXXXGGAGDNVRVA-VRQIYPMELATTQEGTTAVPQPXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAPEDQQREAEAPGAFVNGTPLEVGVRRMSEWLERSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKKATLKQALM-QKGSGVSVYGPSIIEHCVLAAGLRPNAKLTPDGGSGGVHGXXXXXXXXXXXXXXXXAAECSGNGGELRAGLSEDEVRELVVALGGAEAIVQQLDRPGQRGYIQCKPLPXXXXXXXXXXXXXGGSPADGERK--GSKXXXXXXXXXXXXXXXXXEGERKVKQGDAEEGGDHVVYEEFLPQLLAQHEGGAV-IHSFASFDQAVDAFFGRIVEQKLKQTAIAAEAAVERKVAWIRNDQERRVLA-------LEERQEKMLRHAQLAEAWADEVEKALMVVRSALANGMDWQDLEDLVKAETANGNPIASLIHELRLDRNQASVVL---------------------------SLPTAEDGEDDQLVEVDI--MLSAHANARVMYENKKLARAKELKTL 1818
            ++PS F+MKLRK++R + LEDVRQ+GMDRVV F+FG G+ + H+ILELYASGN++LTD+ Y IL LLRTH YE            G    A      G   ++ RV  V  +YP+  A+     T                                 A  E   RE    G   NGT        M++  +R                                                      K  LK ALM  K   +S  GP+I+EH VL AGLRP  +L P   +                       E    G   R GL+E+E   L  A+ G +  +++LD PGQ GYI C+                    ADG R   G +                    R V +G   EGG   + E  L +   Q  G    + +F SFD AVD FF R+ EQK++Q A A E AV  +   ++ + E R+         LE  + ++L  A+L E  +D V+K L+V+RSA+A G DWQ LE+ ++ E A GNP+A +I   +   N+ ++ L                           S P+   G     VEVDI   LSA+AN+R +YE KK    K  KTL
Sbjct:   74 ELPSVFAMKLRKYLRGKGLEDVRQLGMDRVVVFRFGQGEGALHLILELYASGNLVLTDANYLILALLRTHQYEQGPDKAVDGEVVGNDAEAGPGMGEGRVEESGRVVRVGHVYPLAFASNALAATR----SSAAVEKDAGANLDPPPWLAVTAETVLAALREVVVREEGKAGKEGNGTSS------MAQGAKRGRTKRGGQAGASAR---------------------------------------SKVNLKMALMTSKTLDLSGLGPAIVEHAVLEAGLRPLLRLMPPAST-------------------VALVEGGEEGEGRREGLTEEEAARLAEAVQGLDGRLKRLDLPGQEGYILCRK-------------------ADGARARGGEEDEVMYEEFHPLRLRQHERVGRGVGRGGGSEGGVSFLTERLLARPSRQDLGSEKELRTFPSFDAAVDEFFARLEEQKMRQAARAQEEAVRSRPLRVQRENEARLKVGAGWRKVLEATEARLLDAARLVECHSDAVDKVLLVLRSAIATGADWQTLEEYIRKEQAGGNPLARMITGSKWSENKVTLSLEDPYYEGPGEGEGRRGEXXXXXPRQGGSSPSKPGGRSKGAVEVDIDLALSAYANSRALYEAKKKTGEKAGKTL 638          
BLAST of mRNA_Ecto-sp9_F_contig9221.17397.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WSE1_9STRA)

HSP 1 Score: 202 bits (513), Expect = 1.360e-51
Identity = 176/607 (29.00%), Postives = 244/607 (40.20%), Query Frame = 1
Query:   13 TKSDMPSGFSMKLRKHIRTQRLEDVRQVGMDRVVDFKFGSGKASNHVILELYASGNIILTDSKYEILDLLRTHIYEGQGGGAXXXXXXGGAGDNVRVAVRQIYPMELATTQEGTTAVPQPXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAPEDQQREAEAPGAFVNGTPLEVGVRRMSEWLERSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKKATLKQALMQKGSGVSVYGPSIIEHCVLAAGLRPNAKLTPDGGSGGVHGXXXXXXXXXXXXXXXXAAECSGNGGELRAGLSEDEVRELVVALGGAEAIVQQLDR-----PGQRGYIQCKPLPXXXXXXXXXXXXXGGSPADGERKGSKXXXXXXXXXXXXXXXXXEGERKVKQGDAEEGGDHVVYEEFLPQLLAQHEGGAVIHSFASFDQAVDAFFGRIVEQKLKQTAIAAEAAVERKVAWIRNDQERRVLALEERQEKMLRHAQLAEAWADEVEKALMVVRSALANGMDWQDLEDLVKAETANGNPIASLIHELRLDRNQASVVLSLPTAEDGEDDQLVEVDIMLSAHANARVMYENKKLARAKELKTL 1818
            T S +P  F+MKLRKH+R +RL  V Q   DRV+DF FG G   +H+ILELYA+GNIILTD  Y IL LLRTH Y+                D V+VAV+QIYP++        TA                                               F  G  L   V++  + +                                                       K+ TLKQ LM K SG   +GP+I+EHC++ A + P+ K+                               + N   ++  LS +E + LV +L  A  ++ +L R      G+   +                        D  R G                        +   D         ++EF P L AQH G  V   F +FDQAVD FF +I  Q  +     A    E K+  ++  Q+ ++ A  + QE  +  A L E    ++E  L+V+RSALA+GMDW DL+DL+K E  NGNP+A+LIH+L L +N+ SV+L    AED      V +D+ LSA ANAR +Y  KKLA  K  K +
Sbjct:   69 TASALPLQFTMKLRKHLRGKRLASVTQCASDRVIDFCFGDGDQRHHLILELYAAGNIILTDHTYTILSLLRTHAYD----------------DQVKVAVKQIYPIDNEMVVGNNTAA--------------------------------------------SLFSTGVELTEFVQKYVQDIASKEKSK------------------------------------------------KQYTLKQILMTKESGYGAFGPTIVEHCIVEAKVNPSIKIKT----------------------------ATSN---VQVPLSPEEAQALVDSLKNAPVLLDELSRNQVIFQGENSDVN-----------------------DTSRHGFI----------------------ILNADGR-------FDEFTPYLYAQHRGKTV-QEFHTFDQAVDEFFSKIEAQLAEAEKKQAAKVAETKLDKLKKHQQEQMEAFRKTQEDAVTQAMLVEQNQQDIENVLLVIRSALASGMDWSDLDDLIKQEQQNGNPVATLIHKLDLAQNRVSVLLCDIEAEDEAIAHCVSIDLSLSALANARELYSKKKLASKKAQKAI 483          
BLAST of mRNA_Ecto-sp9_F_contig9221.17397.1 vs.
Match: Uncharacterized (protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GI10_9STRA)

HSP 1 Score: 200 bits (508), Expect = 6.380e-51
Identity = 179/604 (29.64%), Postives = 248/604 (41.06%), Query Frame = 1
Query:   13 TKSDMPSGFSMKLRKHIRTQRLEDVRQVGMDRVVDFKFGSGKASNHVILELYASGNIILTDSKYEILDLLRTHIYEGQGGGAXXXXXXGGAGDNVRVAVRQIYPME--LATTQEGTTAVPQPXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAPEDQQREAEAPGAFVNGTPLEVGVRRMSEWLERSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKKATLKQALMQKGSGVSVYGPSIIEHCVLAAGLRPNAKLTPDGGSGGVHGXXXXXXXXXXXXXXXXAAECSGNGGELRAGLSEDEVRELVVALGGAEAIVQQLDRPGQRGYIQCKPLPXXXXXXXXXXXXXGGSPADGERKGSKXXXXXXXXXXXXXXXXXEGERKVKQGDAEEGGDHVVYEEFLPQLLAQHEGGAVIHSFASFDQAVDAFFGRIVEQKLKQTAIAAEAAVERKVAWIRNDQERRVLALEERQEKMLRHAQLAEAWADEVEKALMVVRSALANGMDWQDLEDLVKAETANGNPIASLIHELRLDRNQASVVLSLPTAEDGEDDQLVEVDIMLSAHANARVMYENKKLARAKELKTL 1818
            T S +P  F+MKLRKH+R +RL  V Q G DRV+DF FG G   +H+ILELYA+GNIILTD  Y IL LLRTH Y+                D V+VAV+Q YP++  L     G T+                                               F +G  L + V+R   +++ +A                                                   K+ +LKQ L+ K SG   +GP+I+EHC++ AG+ P+ K+     +  VH                               LS+ E + LV +L  A  ++++L                                       S                   G   V      +G  H  +EEF P L AQH G  ++  F +FDQAVD +F +I  Q +      A    E KV  ++  Q  ++ A E  Q+    HA L E    ++E  L+VVRSALA GMDW DL+DL+K E  NGNP+A+LIH+L L +N+ SV+L    AED      + +D+ LSA ANAR +Y  KK A  K LK +
Sbjct:   69 TASALPLQFTMKLRKHLRGKRLASVTQCGSDRVIDFCFGDGDQRHHLILELYAAGNIILTDHAYTILSLLRTHAYD----------------DQVKVAVKQQYPLDNDLVVGNIGGTS---------------------------------------------SQFSSGADLMLFVQR---YVQEAASKEKSK---------------------------------------------KQYSLKQILLSKESGYGNFGPTIVEHCMVEAGILPSLKVKT--ATSHVH-----------------------------VPLSKAEAQALVDSLQSAPTLLEEL---------------------------------------SSTQVAVHATDVADDTSRRHGFIVV------DGAGH--FEEFTPYLYAQHRGKPIVE-FHTFDQAVDEYFSKIEAQAVDAEKKQAAHVAETKVDKLKKHQLEQMEAFERTQQVAAAHASLVEQNQHDIENVLLVVRSALATGMDWNDLDDLIKQEQHNGNPVATLIHKLDLSQNRLSVLLCDQEAEDDAVAHCISIDLSLSALANARELYSKKKSAVKKALKAI 484          
BLAST of mRNA_Ecto-sp9_F_contig9221.17397.1 vs.
Match: Uncharacterized (protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y629_9STRA)

HSP 1 Score: 199 bits (505), Expect = 1.510e-50
Identity = 177/604 (29.30%), Postives = 245/604 (40.56%), Query Frame = 1
Query:   13 TKSDMPSGFSMKLRKHIRTQRLEDVRQVGMDRVVDFKFGSGKASNHVILELYASGNIILTDSKYEILDLLRTHIYEGQGGGAXXXXXXGGAGDNVRVAVRQIYPMELATTQEGTTAVPQPXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAPEDQQREAEAPGAFVNGTPLEVGVRRMSEWLERSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKKATLKQALMQKGSGVSVYGPSIIEHCVLAAGLRPNAKLTPDGGSGGVHGXXXXXXXXXXXXXXXXAAECSGNGGELRAGLSEDEVRELVVALGGAEAIVQQLDRPGQRGYIQCKPLPXXXXXXXXXXXXXGGSPADGERKGSKXXXXXXXXXXXXXXXXXEGERKVKQGDAEEGGDHVVYEEFLPQLLAQHEGGAVIHSFASFDQAVDAFFGRIVEQKLKQTAIAAEAAVERKVAWIRNDQERRVLALEERQEKMLRHAQLAEAWADEVEKALMVVRSALANGMDWQDLEDLVKAETANGNPIASLIHELRLDRNQASVVLSLPTAEDGEDDQL----VEVDIMLSAHANARVMYENKKLARAKELK 1812
            T S +P  F+MKLRKH+R +RL  V Q   DRV+DF FG G   +H+ILELYA+GNIILTD  Y IL LLR+H Y+                D V+VAV+Q+YPME A     + A                                              AF +G+ L   V  + ++++  A                                                   K+ TLKQ LM K SG+  +GP+I+EHC++ A L  + K+     +                               +   L+  E   LV +L  A  ++ +L +     +                     G  AD    G                        + +G  +       ++EF P L AQH G  V   F +FD AVD FF +I  Q  +     A          ++  Q  ++      QE+ ++ AQL E    ++E  L+VVRSALANGMDW+DLEDLVKAE  NGNPIASLIH L L +N+ +V+L  P A+D + +      V +D+ LSA ANAR +Y  KK A  K  K
Sbjct:   69 TASALPLQFTMKLRKHLRGKRLAAVTQCASDRVIDFTFGDGDQRHHLILELYAAGNIILTDQNYSILSLLRSHTYD----------------DQVKVAVKQVYPMENAMVVGNSAAA---------------------------------------------AFTSGSTL---VAFIQQYVQEQATKEKSK---------------------------------------------KQYTLKQILMSKESGLGGFGPTIVEHCIVKANLASSLKVKTAAAN-------------------------------VVVPLTAAEADALVASLAAAPTLLDELAQSQVTLH---------------------GDGADASDTGDHGFIV------------------LHEGSGQ-------FDEFTPYLYAQHAGRPV-QRFRTFDMAVDEFFSKIEAQTAEAEKRQAAXXXXXXXXXLKRHQLDQMEQFRRTQEEAVKQAQLIEQNQGDIENVLLVVRSALANGMDWKDLEDLVKAEQKNGNPIASLIHRLDLAQNRVAVLLCDPDADDADMESAMAYCVPIDLSLSALANARELYSKKKKAVVKAQK 485          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9221.17397.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized1.310e-26590.11protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHP2... [more]
Uncharacterized1.350e-7337.74protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Hypothetical3.320e-5729.76protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more]
NFACT-R_15.340e-5432.37domain-containing protein n=1 Tax=Klebsormidium ni... [more]
NFACT-R_15.180e-5329.30domain-containing protein (Fragment) n=3 Tax=Aphan... [more]
Aste57867_218839.060e-5329.04protein n=1 Tax=Aphanomyces stellatus TaxID=120398... [more]
NFACT-R_11.280e-5230.21domain-containing protein n=2 Tax=Monodopsidaceae ... [more]
Uncharacterized1.360e-5129.00protein n=1 Tax=Aphanomyces euteiches TaxID=100861... [more]
Uncharacterized6.380e-5129.64protein n=8 Tax=Aphanomyces astaci TaxID=112090 Re... [more]
Uncharacterized1.510e-5029.30protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9221contigEcto-sp9_F_contig9221:114..4684 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score764.2
Seed ortholog evalue4.5e-218
Seed eggNOG ortholog2880.D8LHP2
KEGG koko:K10589
KEGG Pathwayko04120,map04120
EggNOG free text desc.actin binding
EggNOG OGsCOG1293@1,KOG2030@2759
EC2.3.2.26
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDomain of unknown function DUF814
Ec32 orthologEc-26_003870.1
Exons5
Model size1821
Cds size1797
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9221.17397.1prot_Ecto-sp9_F_contig9221.17397.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9221 138..4684 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930997.2705944-UTR-Ecto-sp9_F_contig9221:113..1371622930997.2705944-UTR-Ecto-sp9_F_contig9221:113..137Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9221 114..137 +
1692278985.8730485-UTR-Ecto-sp9_F_contig9221:113..1371692278985.8730485-UTR-Ecto-sp9_F_contig9221:113..137Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9221 114..137 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930997.2885685-CDS-Ecto-sp9_F_contig9221:137..2881622930997.2885685-CDS-Ecto-sp9_F_contig9221:137..288Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9221 138..288 +
1692278985.8883996-CDS-Ecto-sp9_F_contig9221:137..2881692278985.8883996-CDS-Ecto-sp9_F_contig9221:137..288Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9221 138..288 +
1622930997.3084195-CDS-Ecto-sp9_F_contig9221:956..21671622930997.3084195-CDS-Ecto-sp9_F_contig9221:956..2167Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9221 957..2167 +
1692278985.900206-CDS-Ecto-sp9_F_contig9221:956..21671692278985.900206-CDS-Ecto-sp9_F_contig9221:956..2167Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9221 957..2167 +
1622930997.3295505-CDS-Ecto-sp9_F_contig9221:3067..32171622930997.3295505-CDS-Ecto-sp9_F_contig9221:3067..3217Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9221 3068..3217 +
1692278985.9126797-CDS-Ecto-sp9_F_contig9221:3067..32171692278985.9126797-CDS-Ecto-sp9_F_contig9221:3067..3217Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9221 3068..3217 +
1622930997.3443294-CDS-Ecto-sp9_F_contig9221:4022..41631622930997.3443294-CDS-Ecto-sp9_F_contig9221:4022..4163Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9221 4023..4163 +
1692278985.9254167-CDS-Ecto-sp9_F_contig9221:4022..41631692278985.9254167-CDS-Ecto-sp9_F_contig9221:4022..4163Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9221 4023..4163 +
1622930997.359359-CDS-Ecto-sp9_F_contig9221:4540..46841622930997.359359-CDS-Ecto-sp9_F_contig9221:4540..4684Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9221 4541..4684 +
1692278985.9343143-CDS-Ecto-sp9_F_contig9221:4540..46841692278985.9343143-CDS-Ecto-sp9_F_contig9221:4540..4684Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9221 4541..4684 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9221.17397.1

>prot_Ecto-sp9_F_contig9221.17397.1 ID=prot_Ecto-sp9_F_contig9221.17397.1|Name=mRNA_Ecto-sp9_F_contig9221.17397.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=599bp
MPSGFSMKLRKHIRTQRLEDVRQVGMDRVVDFKFGSGKASNHVILELYAS
GNIILTDSKYEILDLLRTHIYEGQGGGAGGGGATGGAGDNVRVAVRQIYP
MELATTQEGTTAVPQPPPSSSSDGAAAAASSTSVEDSAASGGRVAAPEDQ
QREAEAPGAFVNGTPLEVGVRRMSEWLERSAAAAAAPPPVLAAPLPPAPP
VGVTDAGGDNPAAVAGGGGGGGKKKGGGTKKPKKATLKQALMQKGSGVSV
YGPSIIEHCVLAAGLRPNAKLTPDGGSGGVHGAAAAAAAAAAAAGGAGAA
ECSGNGGELRAGLSEDEVRELVVALGGAEAIVQQLDRPGQRGYIQCKPLP
APAPTAPAAAVAVGGSPADGERKGSKAAAAAAATQGGGRGDEEEGERKVK
QGDAEEGGDHVVYEEFLPQLLAQHEGGAVIHSFASFDQAVDAFFGRIVEQ
KLKQTAIAAEAAVERKVAWIRNDQERRVLALEERQEKMLRHAQLAEAWAD
EVEKALMVVRSALANGMDWQDLEDLVKAETANGNPIASLIHELRLDRNQA
SVVLSLPTAEDGEDDQLVEVDIMLSAHANARVMYENKKLARAKELKTLT
back to top

mRNA from alignment at Ecto-sp9_F_contig9221:114..4684+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9221.17397.1 ID=mRNA_Ecto-sp9_F_contig9221.17397.1|Name=mRNA_Ecto-sp9_F_contig9221.17397.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4571bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9221:114..4684+ (Ectocarpus species9 EcSCA_722f female)
AGGTTCACGCACACCAAGTCGGACATGCCGTCCGGGTTCAGCATGAAGCT GAGGAAGCACATCCGCACCCAGAGACTGGAAGACGTCCGGCAGGTGGGCA TGGACAGGGTCGTCGACTTCAAGTTCGGCAGCGGGAAAGCGTCCAACCAC GTCATCCTCGAGCTCTACGCGTCAGGTGGGTGGGTGTGGTTTTGTGACGG CTGGCTAGCTAGCTTGTTGACTGCCTGATTTTGATCGGTGGTGGCAGCAC CACGGGGTTTTGGCCTCGGTATTGCTGTCATCGTCGTTGTTGTGGTTGTG GCTGTTGTTATCGTGTTGGTTGTTTAGGATGCATGGAAGTCTGCCCGGTT TGTTTGGGGGTTGTTAGAATATCGCTTCAAGCTCAACAGAGGGAAGGCGT CCTATCGCTTGTTCTTCAGCGTGGAACCAACGGCAGTTTCGCGCGTGTTC CGAGTGGTGCTGTGTGTTGACCTGGCTGTGGTGTTGGTGTACAACATATC ATTCTGGGTCTGTGGCTGTCGCTGTCGCTGTCGCTTGGCTGTCTGTCGTC CTTGTCGAGGTCGTGACATTTTTTTCTTTTCCCGTTTGTGTACCCCAGCG GTACGCTCCCCTCTTTCGTCATGAAACCAAGACCACCCACGCTATGAGCG GAGTTGAGCATGTCAGCGAAGACGCAACATCCTCGAAATCAACTTCCAAC CTACTCTAGCCCTTAATGGACATACATGCGTGGAACCGTCTGACCTCCCA GAACAAGACGCCTCCACTTTGCCCGTACTTATGCGGTCTACGCGCCCCTA TCGTGCTGGCCGCCTCCTGCTGTCTCCCGTTCATCTCGCGCAGGTAACAT CATCCTGACGGACTCCAAGTACGAGATCCTCGACCTCCTAAGAACGCACA TCTACGAAGGCCAGGGCGGCGGGGCCGGCGGCGGCGGCGCCACCGGCGGC GCTGGAGACAACGTGAGAGTCGCGGTGAGGCAGATCTACCCGATGGAGCT CGCCACCACTCAGGAGGGAACGACAGCGGTGCCGCAACCGCCACCTTCTT CGTCCTCGGACGGAGCGGCGGCGGCGGCTTCTTCTACTTCCGTGGAGGAT TCCGCCGCGAGCGGCGGCCGGGTGGCGGCGCCAGAAGACCAGCAGCGGGA AGCAGAGGCACCGGGAGCGTTCGTCAACGGCACGCCGCTCGAGGTCGGGG TGCGGCGGATGAGCGAGTGGCTGGAGCGCTCTGCAGCGGCGGCGGCAGCG CCTCCCCCGGTTCTTGCTGCCCCGCTCCCGCCCGCTCCTCCAGTCGGCGT GACGGACGCCGGAGGGGATAACCCCGCCGCCGTTGCCGGCGGCGGCGGCG GTGGCGGGAAGAAGAAGGGCGGCGGCACCAAGAAGCCGAAAAAGGCGACG CTCAAGCAGGCGCTGATGCAGAAGGGTTCCGGGGTGTCGGTGTACGGGCC CTCGATCATCGAGCACTGCGTGCTGGCGGCGGGGCTGAGGCCCAACGCCA AGCTTACACCAGACGGCGGCAGCGGTGGCGTCCACGGAGCAGCAGCAGCA GCAGCAGCAGCAGCAGCAGCAGCCGGTGGGGCTGGGGCTGCTGAGTGTAG TGGGAACGGCGGCGAGCTGCGTGCGGGTTTGTCCGAGGACGAGGTGCGGG AGCTGGTCGTTGCGCTCGGAGGGGCGGAGGCGATCGTCCAGCAGCTCGAC CGCCCCGGGCAGCGGGGCTACATCCAGTGCAAACCCCTGCCGGCACCGGC ACCGACGGCACCGGCAGCGGCGGTGGCGGTGGGGGGGAGCCCTGCTGACG GCGAGAGAAAGGGGTCGAAGGCGGCGGCGGCGGCGGCGGCCACACAGGGA GGTGGGCGGGGGGACGAGGAGGAGGGCGAGAGGAAAGTGAAGCAGGGTGA CGCGGAGGAGGGCGGCGACCACGTGGTCTACGAGGAGTTCTTGCCGCAGC TCTTGGCCCAGCACGAGGGCGGCGCGGTGATCCACTCCTTTGCGTCCTTC GACCAGGCCGTTGACGCGTTTTTCGGCCGCATCGTGGAGCAGAAGCTCAA GCAGGTGACTTTGGAGGGGGGAGATAAGGCTAATGACCATGTCTTGTTGG TGCCTGACAGCGCAGTGTTTAGGGGAGAGAGAGAGAGACGAAGATAGCAG GGTGGTCCATGTAGCCAGGAAGGAGAAGGATTGTTGCGGCAAGGGAGCCC GGGCGTAGGGCACTGGAACGGTGGAGGAATGAGAGGATCAGGTGGCTGAA TGACATTGTTGTTATGTGTTTTGGGGGTGGGATTGGTCCGTGACGCAGTT CTATTTGTCATTCGCGAACATCCACCGTGCAAGCTCATCTGCCCGTTTGG CGCCATTTCTGCTGGCTCGATGCATCTTTATGTGTGGTACGTGCGCCGTG GAACATATCTTGGCGTCGATGCTTGCGATCGTTTCAACGATGGGATAAGA GCGCGTGGGGTTGCGTTGTGTTGAACGATGCTCAGCGCGCGTGCTTGATG CTGAAGAAAGTGAGCCATCGCGAGCGCAAACAGCTACCTGCCGTACAACG TTGTACACGCAGTAAGAAGGCAGCCGGTGGTGCGATGGAAACCTGAACCC ACGACGGAGTAAGGAGGTTTCGCGGCCTCGTCGACTATCTCTCAATTTGT TTTTTGGTGGGCCTTCTCCCTGTACGCGTTATTTTCTTCCAGTAAGACCA ACCAGCATACTGCACGTTTTCGAACACAACGGCAGCGAGCATATACAGGA AATGGTCGCTTCATGGAAAGCCACCGGAAACACACTACACCGCTGTCGAT ATTATCACGAAACAAAACTGGTGGCCGACTCCTTCGTGGTTTGCGCTGTA CCGCGTGTCAAAGCTCCATCTAAACTTAATTTTACTATACATAAGTATGT ATTTTTTGTTTATTCCCGGCTTCATTAATGTCGGGCCAAATGAAAACGAA ACAGACGGCGATCGCGGCCGAAGCGGCGGTGGAGAGGAAGGTGGCGTGGA TCAGGAACGACCAGGAGCGGAGGGTGCTCGCCCTGGAGGAGCGGCAGGAG AAGATGCTCCGGCACGCGCAGCTCGCCGAAGCCTGGGCGGACGAAGTGGA AAAGGTGACTGATTTATCCTCAGTTCAAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGACAGAGACAGAGA CAGAGACAGAGACAGAGACACAGAGACAGAAATGACAGAATATCCCAACA GTTTTTGCTGTGGTTCTCTGCTCGTGGTTTCGAGATTGCACCAGCAACGT TTCGGGTCTGTTGTTCTGTGGATATGCGCGTGGATAAGTCTGGATACTTG AATGCGATCAATTATTGGGTTGTTGGATCCAAAATGAGAATGTAAAAACT TGTGACTCACACTCGAGAAGAATGTCGCGCCCGTGTGTCTTGTGTCTTGT GTGTCAGTGTGCAGACACGTTCGTTGCGCGAGTCGTCGGATTGGACTCAC GTTTGAGTTCGGTACACCCCCCCTATCTCTCTGCCTGTCTCTGTCTCTGT CTCTGTCTCTGTCTCTGTCTCTGCGTCTGTCTCTCTCCTTGTGTCCCGCC GTTCTCGCTCGCCAGGTTGTTTTGTTTTTTAATTCGTTGTTTCTGTGTCG AACACGAGGTAGCTCTTTCGTGTTCGCGAGTAGTAACCTCCCATCCTCTG TCTTTGGTTTCTTTCTCTTTTGGTTCTAACACCGCCATCAACACCAAAGT CCGTTCGTCGATCTCTCTCTCTCTCTCTCTCTGGTACACAAGCCGTTGTG CGAGTGTTTAGCATAAGTTCAGGCCGATTTGTTTCGTTCATGTGCTATAA TCAAATCCCCACCACCACCACCACCAACAACAACAAGTTCGAACGAATGA ACTGGCCAGGCGCTGATGGTGGTCCGGAGCGCCCTGGCTAACGGTATGGA CTGGCAGGACCTTGAGGATCTGGTCAAGGCCGAGACGGCCAACGGCAACC CCATAGCCTCCCTCATCCACGAGCTGCGGCTCGATCGGAACCAGGCGAGC GTTGCATGTCATTTTGATGAAGATGCGGCGCGTTGTATTCGTCTGCTCGA GCGTTGTTTTTGCGGGAAGGGAGGGAGGGAGGGAGGGAGGGGGGGGAGGC AAGGAACCAAGCGTAAGATGATGTGAATCTTGTGTACCTATGTATATATG TATAGAAATGTGGTATTGGCGAAGGAGCGGGTGAGGGCACCTGTTGGAGA AACATGCGAGACTCTTTTCTGTGAAAGGAGATGCCAATACCCGCCGTTGC ACGACGACGAGTACGAACACCGGCTTGTGCATCCCGACAGCAACGATACC ACGTTTCTCACCCCCTCCTTTCGCCGTCGGCCCCCCTTTTTGGTTCGATT CTCTCTATTTTTTCCGCCCCCGCGCAGGTCGTTCTGTCCCTCCCTACTGC TGAGGATGGTGAGGACGACCAGCTGGTGGAGGTGGACATCATGCTCTCGG CCCACGCCAACGCCCGCGTCATGTACGAGAACAAGAAGCTCGCCAGGGCG AAGGAGCTCAAGACTCTCACG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9221:114..4684+

>mRNA_Ecto-sp9_F_contig9221.17397.1 ID=mRNA_Ecto-sp9_F_contig9221.17397.1|Name=mRNA_Ecto-sp9_F_contig9221.17397.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=3594bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9221:114..4684+ (Ectocarpus species9 EcSCA_722f female)
ATGCCGTCCGGGTTCAGCATGAAGCTGAGGAAGCACATCCGCACCCAGAG
ACTGGAAGACGTCCGGCAGGTGGGCATGGACAGGGTCGTCGACTTCAAGT
TCGGCAGCGGGAAAGCGTCCAACCACGTCATCCTCGAGCTCTACGCGTCA
GATGCCGTCCGGGTTCAGCATGAAGCTGAGGAAGCACATCCGCACCCAGA
GACTGGAAGACGTCCGGCAGGTGGGCATGGACAGGGTCGTCGACTTCAAG
TTCGGCAGCGGGAAAGCGTCCAACCACGTCATCCTCGAGCTCTACGCGTC
AGGTAACATCATCCTGACGGACTCCAAGTACGAGATCCTCGACCTCCTAA
GAACGCACATCTACGAAGGCCAGGGCGGCGGGGCCGGCGGCGGCGGCGCC
ACCGGCGGCGCTGGAGACAACGTGAGAGTCGCGGTGAGGCAGATCTACCC
GATGGAGCTCGCCACCACTCAGGAGGGAACGACAGCGGTGCCGCAACCGC
CACCTTCTTCGTCCTCGGACGGAGCGGCGGCGGCGGCTTCTTCTACTTCC
GTGGAGGATTCCGCCGCGAGCGGCGGCCGGGTGGCGGCGCCAGAAGACCA
GCAGCGGGAAGCAGAGGCACCGGGAGCGTTCGTCAACGGCACGCCGCTCG
AGGTCGGGGTGCGGCGGATGAGCGAGTGGCTGGAGCGCTCTGCAGCGGCG
GCGGCAGCGCCTCCCCCGGTTCTTGCTGCCCCGCTCCCGCCCGCTCCTCC
AGTCGGCGTGACGGACGCCGGAGGGGATAACCCCGCCGCCGTTGCCGGCG
GCGGCGGCGGTGGCGGGAAGAAGAAGGGCGGCGGCACCAAGAAGCCGAAA
AAGGCGACGCTCAAGCAGGCGCTGATGCAGAAGGGTTCCGGGGTGTCGGT
GTACGGGCCCTCGATCATCGAGCACTGCGTGCTGGCGGCGGGGCTGAGGC
CCAACGCCAAGCTTACACCAGACGGCGGCAGCGGTGGCGTCCACGGAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGGTGGGGCTGGGGCTGC
TGAGTGTAGTGGGAACGGCGGCGAGCTGCGTGCGGGTTTGTCCGAGGACG
AGGTGCGGGAGCTGGTCGTTGCGCTCGGAGGGGCGGAGGCGATCGTCCAG
CAGCTCGACCGCCCCGGGCAGCGGGGCTACATCCAGTGCAAACCCCTGCC
GGCACCGGCACCGACGGCACCGGCAGCGGCGGTGGCGGTGGGGGGGAGCC
CTGCTGACGGCGAGAGAAAGGGGTCGAAGGCGGCGGCGGCGGCGGCGGCC
ACACAGGGAGGTGGGCGGGGGGACGAGGAGGAGGGCGAGAGGAAAGTGAA
GCAGGGTGACGCGGAGGAGGGCGGCGACCACGTGGTCTACGAGGAGTTCT
TGCCGCAGCTCTTGGCCCAGCACGAGGGCGGCGCGGTGATCCACTCCTTT
GCGTCCTTCGACCAGGCCGTTGACGCGTTTTTCGGCCGCATCGTGGAGCA
GAAGCTCAAGCAGGTAACATCATCCTGACGGACTCCAAGTACGAGATCCT
CGACCTCCTAAGAACGCACATCTACGAAGGCCAGGGCGGCGGGGCCGGCG
GCGGCGGCGCCACCGGCGGCGCTGGAGACAACGTGAGAGTCGCGGTGAGG
CAGATCTACCCGATGGAGCTCGCCACCACTCAGGAGGGAACGACAGCGGT
GCCGCAACCGCCACCTTCTTCGTCCTCGGACGGAGCGGCGGCGGCGGCTT
CTTCTACTTCCGTGGAGGATTCCGCCGCGAGCGGCGGCCGGGTGGCGGCG
CCAGAAGACCAGCAGCGGGAAGCAGAGGCACCGGGAGCGTTCGTCAACGG
CACGCCGCTCGAGGTCGGGGTGCGGCGGATGAGCGAGTGGCTGGAGCGCT
CTGCAGCGGCGGCGGCAGCGCCTCCCCCGGTTCTTGCTGCCCCGCTCCCG
CCCGCTCCTCCAGTCGGCGTGACGGACGCCGGAGGGGATAACCCCGCCGC
CGTTGCCGGCGGCGGCGGCGGTGGCGGGAAGAAGAAGGGCGGCGGCACCA
AGAAGCCGAAAAAGGCGACGCTCAAGCAGGCGCTGATGCAGAAGGGTTCC
GGGGTGTCGGTGTACGGGCCCTCGATCATCGAGCACTGCGTGCTGGCGGC
GGGGCTGAGGCCCAACGCCAAGCTTACACCAGACGGCGGCAGCGGTGGCG
TCCACGGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGGTGGG
GCTGGGGCTGCTGAGTGTAGTGGGAACGGCGGCGAGCTGCGTGCGGGTTT
GTCCGAGGACGAGGTGCGGGAGCTGGTCGTTGCGCTCGGAGGGGCGGAGG
CGATCGTCCAGCAGCTCGACCGCCCCGGGCAGCGGGGCTACATCCAGTGC
AAACCCCTGCCGGCACCGGCACCGACGGCACCGGCAGCGGCGGTGGCGGT
GGGGGGGAGCCCTGCTGACGGCGAGAGAAAGGGGTCGAAGGCGGCGGCGG
CGGCGGCGGCCACACAGGGAGGTGGGCGGGGGGACGAGGAGGAGGGCGAG
AGGAAAGTGAAGCAGGGTGACGCGGAGGAGGGCGGCGACCACGTGGTCTA
CGAGGAGTTCTTGCCGCAGCTCTTGGCCCAGCACGAGGGCGGCGCGGTGA
TCCACTCCTTTGCGTCCTTCGACCAGGCCGTTGACGCGTTTTTCGGCCGC
ATCGTGGAGCAGAAGCTCAAGCAGACGGCGATCGCGGCCGAAGCGGCGGT
GGAGAGGAAGGTGGCGTGGATCAGGAACGACCAGGAGCGGAGGGTGCTCG
CCCTGGAGGAGCGGCAGGAGAAGATGCTCCGGCACGCGCAGCTCGCCGAA
GCCTGGGCGGACGAAGTGGAAAAGACGGCGATCGCGGCCGAAGCGGCGGT
GGAGAGGAAGGTGGCGTGGATCAGGAACGACCAGGAGCGGAGGGTGCTCG
CCCTGGAGGAGCGGCAGGAGAAGATGCTCCGGCACGCGCAGCTCGCCGAA
GCCTGGGCGGACGAAGTGGAAAAGGCGCTGATGGTGGTCCGGAGCGCCCT
GGCTAACGGTATGGACTGGCAGGACCTTGAGGATCTGGTCAAGGCCGAGA
CGGCCAACGGCAACCCCATAGCCTCCCTCATCCACGAGCTGCGGCTCGAT
CGGAACCAGGCGAGCGCGCTGATGGTGGTCCGGAGCGCCCTGGCTAACGG
TATGGACTGGCAGGACCTTGAGGATCTGGTCAAGGCCGAGACGGCCAACG
GCAACCCCATAGCCTCCCTCATCCACGAGCTGCGGCTCGATCGGAACCAG
GCGAGCGTCGTTCTGTCCCTCCCTACTGCTGAGGATGGTGAGGACGACCA
GCTGGTGGAGGTGGACATCATGCTCTCGGCCCACGCCAACGCCCGCGTCA
TGTACGAGAACAAGAAGCTCGCCAGGGCGAAGGAGCTCAAGACTCTCACG
GTCGTTCTGTCCCTCCCTACTGCTGAGGATGGTGAGGACGACCAGCTGGT
GGAGGTGGACATCATGCTCTCGGCCCACGCCAACGCCCGCGTCATGTACG
AGAACAAGAAGCTCGCCAGGGCGAAGGAGCTCAAGACTCTCACG
back to top