mRNA_Ecto-sp9_F_contig922.17394.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig922.17394.1
Unique NamemRNA_Ecto-sp9_F_contig922.17394.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig922.17394.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G959_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 1.000e-46
Identity = 73/83 (87.95%), Postives = 77/83 (92.77%), Query Frame = 1 
Query:    1 MMRYFACLAALVGTKVVSSHPLCFFDDRQPDYDQVLTFCDNSIASSGACSTDDEEAHVVVDFNAVTLEGVELTGDCSDLYKQV 249
            MMR+FACLAALVGTKVVSSHPLCFFDDRQPDYDQVLTFCDNSI S GAC TDDEEA V+ +F+AVT EGVELTGDCSDLYKQV
Sbjct:    1 MMRFFACLAALVGTKVVSSHPLCFFDDRQPDYDQVLTFCDNSITSYGACCTDDEEALVMANFSAVTPEGVELTGDCSDLYKQV 83
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BLAST of mRNA_Ecto-sp9_F_contig922.17394.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G957_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 3.560e-35
Identity = 68/83 (81.93%), Postives = 71/83 (85.54%), Query Frame = 1 
Query:    1 MMRYFACLAALVGTKVVSSHPLCFFDDRQPDYDQVLTFCDNSIASSGACSTDDEEAHVVVDFNAVTLEGVELTGDCSDLYKQV 249
            MMR FACLAALV T+V +SHPLCF DD+  DYDQVLTFCDNSIASSGAC TDDEEA VVVDFNAVT  G ELTGDC DLYKQV
Sbjct:    1 MMRSFACLAALVATQV-ASHPLCFIDDKPTDYDQVLTFCDNSIASSGACCTDDEEAQVVVDFNAVTPVGEELTGDCPDLYKQV 82
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BLAST of mRNA_Ecto-sp9_F_contig922.17394.1 vs.
Match: Glucose (sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G961_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 2.420e-34
Identity = 63/83 (75.90%), Postives = 71/83 (85.54%), Query Frame = 1 
Query:    1 MMRYFACLAALVGTKVVSSHPLCFFDDRQPDYDQVLTFCDNSIASSGACSTDDEEAHVVVDFNAVTLEGVELTGDCSDLYKQV 249
            MMR FACLAALVG KVV+SHPLCFFDDR  DY++VLTFCD SIA+ GAC TDDEE  V+ DF+ VT EGVELTGDCS+LYK+V
Sbjct:    1 MMRAFACLAALVGIKVVTSHPLCFFDDRPTDYNEVLTFCDTSIAAYGACCTDDEEVQVMKDFSGVTPEGVELTGDCSNLYKEV 83
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BLAST of mRNA_Ecto-sp9_F_contig922.17394.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K353_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 3.750e-28
Identity = 51/81 (62.96%), Postives = 62/81 (76.54%), Query Frame = 1 
Query:    4 MRYFACLAALVGTKVVSSHPLCFFDDRQPDYDQVLTFCDNSIASSGACSTDDEEAHVVVDFNAVTLEGVELTGDCSDLYKQ 246
            MR +ACLAAL  TKV ++HPLC+FDDR  DYDQVLTFCDNSIA SGAC TD+EE  V  +F+A   EGV  + +C+ LYK+
Sbjct:    1 MRAYACLAALAATKV-AAHPLCYFDDRPTDYDQVLTFCDNSIAMSGACCTDEEEGQVEANFDAAFAEGVVPSSECAALYKE 80
[Close]
BLAST of mRNA_Ecto-sp9_F_contig922.17394.1 vs.
Match: Glucose (sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4P3_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 6.340e-22
Identity = 50/82 (60.98%), Postives = 60/82 (73.17%), Query Frame = 1 
Query:    4 MRYFACLAALVGTKVVSSHPLCFFDDRQPDYDQVLTFCDNSIASSGACSTDDEEAHVVVDFNAVTLEGVELTGDCSDLYKQV 249
            MR +ACLAAL  TKV ++HPLCF DD+  DYDQVLT+CDNSIA SGAC T++EE  V  +FNA    GV  +  C+ LYKQV
Sbjct:    1 MRAYACLAALAATKV-AAHPLCFIDDKPTDYDQVLTYCDNSIAMSGACCTNEEEDIVEANFNAAFGVGVVPSTACAALYKQV 81
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig922.17394.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Uncharacterized1.000e-4687.95protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.560e-3581.93protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Glucose2.420e-3475.90sorbosone dehydrogenase n=1 Tax=Ectocarpus silicul... [more]
Uncharacterized3.750e-2862.96protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Glucose6.340e-2260.98sorbosone dehydrogenase n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig922contigEcto-sp9_F_contig922:3485..3896 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.0
Seed ortholog evalue8.2e-30
Seed eggNOG ortholog2880.D7G957
KEGG rclassRC00194
KEGG koko:K04618,ko:K08254,ko:K11244,ko:K20929
KEGG ReactionR01098
KEGG Pathwayko00052,ko04011,ko04139,map00052,map04011,map04139
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-13_003090.1
EC1.1.3.9,1.2.3.15,3.2.1.59
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categorysignal peptide
Exons2
Model size249
Cds size249
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930996.6489608-CDS-Ecto-sp9_F_contig922:3484..36311622930996.6489608-CDS-Ecto-sp9_F_contig922:3484..3631Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig922 3485..3631 -
1692278985.5360985-CDS-Ecto-sp9_F_contig922:3484..36311692278985.5360985-CDS-Ecto-sp9_F_contig922:3484..3631Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig922 3485..3631 -
1622930996.6655717-CDS-Ecto-sp9_F_contig922:3794..38961622930996.6655717-CDS-Ecto-sp9_F_contig922:3794..3896Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig922 3795..3896 -
1692278985.5503252-CDS-Ecto-sp9_F_contig922:3794..38961692278985.5503252-CDS-Ecto-sp9_F_contig922:3794..3896Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig922 3795..3896 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig922.17394.1prot_Ecto-sp9_F_contig922.17394.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig922 3485..3896 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig922.17394.1

>prot_Ecto-sp9_F_contig922.17394.1 ID=prot_Ecto-sp9_F_contig922.17394.1|Name=mRNA_Ecto-sp9_F_contig922.17394.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=83bp
MMRYFACLAALVGTKVVSSHPLCFFDDRQPDYDQVLTFCDNSIASSGACS
TDDEEAHVVVDFNAVTLEGVELTGDCSDLYKQV
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mRNA from alignment at Ecto-sp9_F_contig922:3485..3896-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig922.17394.1 ID=mRNA_Ecto-sp9_F_contig922.17394.1|Name=mRNA_Ecto-sp9_F_contig922.17394.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=412bp|location=Sequence derived from alignment at Ecto-sp9_F_contig922:3485..3896- (Ectocarpus species9 EcSCA_722f female)
ATGATGCGTTACTTCGCGTGTCTAGCCGCGCTGGTCGGCACCAAGGTGGT
GTCGTCGCACCCTCTCTGTTTTTTCGACGACAGACAGCCGGATTATGACC
AGGTATTGCCTCCAATTGTATGTAGTTCCATATTCGACACAACAAGAATC
ACCCGCTCGAGATTACCCACGACTGTCACCCCACGCGCTCTGTTGCAGAT
TGCATCTATTGCTGTACCTTTGCATCGCACTTCCCCGATCTGTTTTTCGT
CGGCACAACAAACAGGTCTTGACCTTCTGCGACAACTCGATCGCGTCGTC
CGGTGCCTGCAGCACGGACGATGAGGAAGCCCACGTGGTGGTCGACTTCA
ACGCCGTGACGCTGGAGGGGGTGGAGCTCACCGGGGATTGCTCTGATCTC
TACAAGCAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig922:3485..3896-

>mRNA_Ecto-sp9_F_contig922.17394.1 ID=mRNA_Ecto-sp9_F_contig922.17394.1|Name=mRNA_Ecto-sp9_F_contig922.17394.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=498bp|location=Sequence derived from alignment at Ecto-sp9_F_contig922:3485..3896- (Ectocarpus species9 EcSCA_722f female)
ATGATGCGTTACTTCGCGTGTCTAGCCGCGCTGGTCGGCACCAAGGTGGT
GTCGTCGCACCCTCTCTGTTTTTTCGACGACAGACAGCCGGATTATGACC
AGATGATGCGTTACTTCGCGTGTCTAGCCGCGCTGGTCGGCACCAAGGTG
GTGTCGTCGCACCCTCTCTGTTTTTTCGACGACAGACAGCCGGATTATGA
CCAGGTCTTGACCTTCTGCGACAACTCGATCGCGTCGTCCGGTGCCTGCA
GCACGGACGATGAGGAAGCCCACGTGGTGGTCGACTTCAACGCCGTGACG
CTGGAGGGGGTGGAGCTCACCGGGGATTGCTCTGATCTCTACAAGCAGGT
GGTCTTGACCTTCTGCGACAACTCGATCGCGTCGTCCGGTGCCTGCAGCA
CGGACGATGAGGAAGCCCACGTGGTGGTCGACTTCAACGCCGTGACGCTG
GAGGGGGTGGAGCTCACCGGGGATTGCTCTGATCTCTACAAGCAGGTG
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