mRNA_Ecto-sp9_F_contig9111.17306.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9111.17306.1
Unique NamemRNA_Ecto-sp9_F_contig9111.17306.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9111.17306.1 vs.
Match: Matrin-type (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G993_ECTSI)

HSP 1 Score: 179 bits (453), Expect = 1.820e-55
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1 
Query:    1 RRNFDRHFQEWRHAHGMRCLGIPNTKHFHDIVLIQDARDLYAKIKDSLDKEQWNPEDNEEYEDGEGNVLNRRTYEDLARQGLM 249
            RRNFDRHFQEWRHAHGMRCLGIPNTKHFHDIVLIQDARDLYAKIKDSLDKEQWNPEDNEEYEDGEGNVLNRRTYEDLARQGLM
Sbjct:  126 RRNFDRHFQEWRHAHGMRCLGIPNTKHFHDIVLIQDARDLYAKIKDSLDKEQWNPEDNEEYEDGEGNVLNRRTYEDLARQGLM 208
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BLAST of mRNA_Ecto-sp9_F_contig9111.17306.1 vs.
Match: Matrin-type (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUU5_ECTSI)

HSP 1 Score: 179 bits (453), Expect = 5.540e-52
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1 
Query:    1 RRNFDRHFQEWRHAHGMRCLGIPNTKHFHDIVLIQDARDLYAKIKDSLDKEQWNPEDNEEYEDGEGNVLNRRTYEDLARQGLM 249
            RRNFDRHFQEWRHAHGMRCLGIPNTKHFHDIVLIQDARDLYAKIKDSLDKEQWNPEDNEEYEDGEGNVLNRRTYEDLARQGLM
Sbjct:  458 RRNFDRHFQEWRHAHGMRCLGIPNTKHFHDIVLIQDARDLYAKIKDSLDKEQWNPEDNEEYEDGEGNVLNRRTYEDLARQGLM 540
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BLAST of mRNA_Ecto-sp9_F_contig9111.17306.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NE02_HETAK)

HSP 1 Score: 138 bits (348), Expect = 2.370e-40
Identity = 64/83 (77.11%), Postives = 70/83 (84.34%), Query Frame = 1 
Query:    1 RRNFDRHFQEWRHAHGMRCLGIPNTKHFHDIVLIQDARDLYAKIKDSLDKEQWNPEDNEEYEDGEGNVLNRRTYEDLARQGLM 249
            RR FDRHFQEWRHAHGMRCLGIPNTKHFHDI  I+DA+ LYAK+K  LD + W+    EEYED EGNVLNRRTYEDLARQGL+
Sbjct:   62 RRAFDRHFQEWRHAHGMRCLGIPNTKHFHDITTIEDAKALYAKLKAGLDGDAWDGAVEEEYEDSEGNVLNRRTYEDLARQGLL 144
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BLAST of mRNA_Ecto-sp9_F_contig9111.17306.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2Q3_9STRA)

HSP 1 Score: 141 bits (355), Expect = 2.040e-39
Identity = 66/83 (79.52%), Postives = 70/83 (84.34%), Query Frame = 1 
Query:    1 RRNFDRHFQEWRHAHGMRCLGIPNTKHFHDIVLIQDARDLYAKIKDSLDKEQWNPEDNEEYEDGEGNVLNRRTYEDLARQGLM 249
            RR FDRHFQEWRHAHGMRCLGIPNTKHFHDI LI+DA  L+ KIKD L  E WN +  EEYED EGNVLNRRTYEDLARQGL+
Sbjct:  232 RRAFDRHFQEWRHAHGMRCLGIPNTKHFHDITLIEDATALFDKIKDQLAGEMWNADMEEEYEDSEGNVLNRRTYEDLARQGLL 314
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BLAST of mRNA_Ecto-sp9_F_contig9111.17306.1 vs.
Match: SF3A3 (protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812TNG2_SYMMI)

HSP 1 Score: 139 bits (351), Expect = 4.470e-38
Identity = 65/83 (78.31%), Postives = 73/83 (87.95%), Query Frame = 1 
Query:    1 RRNFDRHFQEWRHAHGMRCLGIPNTKHFHDIVLIQDARDLYAKIKDSLDKEQWNPEDNEEYEDGEGNVLNRRTYEDLARQGLM 249
            RR FDRHFQEWRHAHGMRCLG+PNTKHFHDI LI+DA  LY+KI+DSL KEQ+  +  EE+ED EGNVLNRRTYEDLARQGL+
Sbjct:  316 RRAFDRHFQEWRHAHGMRCLGVPNTKHFHDITLIEDALALYSKIRDSLKKEQFVEDVEEEFEDSEGNVLNRRTYEDLARQGLL 398
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BLAST of mRNA_Ecto-sp9_F_contig9111.17306.1 vs.
Match: Matrin-type (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE40_9STRA)

HSP 1 Score: 141 bits (355), Expect = 9.050e-38
Identity = 65/83 (78.31%), Postives = 72/83 (86.75%), Query Frame = 1 
Query:    1 RRNFDRHFQEWRHAHGMRCLGIPNTKHFHDIVLIQDARDLYAKIKDSLDKEQWNPEDNEEYEDGEGNVLNRRTYEDLARQGLM 249
            RR FDRHFQE+RHAHGMRCLGIPNTKHFHDI LIQDA DLYAK+K  L+ E W P+  EE+ED EGNVLN+RTYEDLARQGL+
Sbjct:  460 RRAFDRHFQEFRHAHGMRCLGIPNTKHFHDITLIQDAMDLYAKLKGKLEVEAWTPDVGEEFEDSEGNVLNKRTYEDLARQGLL 542
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BLAST of mRNA_Ecto-sp9_F_contig9111.17306.1 vs.
Match: Uncharacterized (protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X6A8_GLOUD)

HSP 1 Score: 140 bits (352), Expect = 2.000e-37
Identity = 63/83 (75.90%), Postives = 71/83 (85.54%), Query Frame = 1 
Query:    1 RRNFDRHFQEWRHAHGMRCLGIPNTKHFHDIVLIQDARDLYAKIKDSLDKEQWNPEDNEEYEDGEGNVLNRRTYEDLARQGLM 249
            RR FDRHFQEWRHA GMRCL IPNTKHFHDI L++DA  LY K+KD +D E WNPE+ EE+ED EGNVLNR+TYEDLARQGL+
Sbjct:  442 RRAFDRHFQEWRHAFGMRCLKIPNTKHFHDITLMRDAIQLYEKLKDQIDAENWNPENEEEFEDSEGNVLNRKTYEDLARQGLL 524
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BLAST of mRNA_Ecto-sp9_F_contig9111.17306.1 vs.
Match: C2H2-type (domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y8G9_9STRA)

HSP 1 Score: 138 bits (348), Expect = 7.910e-37
Identity = 62/83 (74.70%), Postives = 71/83 (85.54%), Query Frame = 1 
Query:    1 RRNFDRHFQEWRHAHGMRCLGIPNTKHFHDIVLIQDARDLYAKIKDSLDKEQWNPEDNEEYEDGEGNVLNRRTYEDLARQGLM 249
            RR FDRHFQEWRHA GMRCL IPNTKHFHDI L++DA  LY K+KD +D E WNPE+ EE+ED EGNVLNR+T+EDLARQGL+
Sbjct:  447 RRAFDRHFQEWRHAFGMRCLKIPNTKHFHDITLMRDAIQLYEKLKDQIDTENWNPENEEEFEDSEGNVLNRKTFEDLARQGLL 529
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BLAST of mRNA_Ecto-sp9_F_contig9111.17306.1 vs.
Match: C2H2-type (domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BU83_PYTIN)

HSP 1 Score: 139 bits (349), Expect = 2.420e-36
Identity = 62/83 (74.70%), Postives = 71/83 (85.54%), Query Frame = 1 
Query:    1 RRNFDRHFQEWRHAHGMRCLGIPNTKHFHDIVLIQDARDLYAKIKDSLDKEQWNPEDNEEYEDGEGNVLNRRTYEDLARQGLM 249
            RR FDRHFQ+WRHAHGMRCLGIPNTKHFHDI  +QDA  LY K+KD +D+E WN E  EE+ED EGNVL+R+TYEDLARQGL+
Sbjct: 2155 RREFDRHFQQWRHAHGMRCLGIPNTKHFHDITGMQDAIALYEKLKDQIDQENWNAEKEEEFEDSEGNVLSRKTYEDLARQGLL 2237
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BLAST of mRNA_Ecto-sp9_F_contig9111.17306.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C7B4_PYTOL)

HSP 1 Score: 136 bits (343), Expect = 3.930e-36
Identity = 61/83 (73.49%), Postives = 69/83 (83.13%), Query Frame = 1 
Query:    1 RRNFDRHFQEWRHAHGMRCLGIPNTKHFHDIVLIQDARDLYAKIKDSLDKEQWNPEDNEEYEDGEGNVLNRRTYEDLARQGLM 249
            RR FDRHFQ+WRHAHGMRCLGIPNTKHFHDI L++DA  LY K+K  +D E WN    EE+ED EGNVLNR+TYEDLARQGL+
Sbjct:  443 RREFDRHFQQWRHAHGMRCLGIPNTKHFHDITLMRDAIALYEKLKTEIDAESWNATTEEEFEDSEGNVLNRKTYEDLARQGLL 525
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9111.17306.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Matrin-type1.820e-55100.00domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Matrin-type5.540e-52100.00domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
Hypothetical2.370e-4077.11protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
Hypothetical2.040e-3979.52protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
SF3A34.470e-3878.31protein n=1 Tax=Symbiodinium microadriaticum TaxID... [more]
Matrin-type9.050e-3878.31domain-containing protein n=1 Tax=Tribonema minus ... [more]
Uncharacterized2.000e-3775.90protein n=1 Tax=Globisporangium ultimum (strain AT... [more]
C2H2-type7.910e-3774.70domain-containing protein n=1 Tax=Pythium brassicu... [more]
C2H2-type2.420e-3674.70domain-containing protein n=1 Tax=Pythium insidios... [more]
Uncharacterized3.930e-3673.49protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9111contigEcto-sp9_F_contig9111:4781..5443 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score179.5
Seed ortholog evalue6.6e-43
Seed eggNOG ortholog2880.D7FUU5
Preferred nameSF3A3
KEGG rclassRC00005,RC00443
KEGG koko:K01676,ko:K10777,ko:K12827
KEGG ReactionR00381,R01082
KEGG Pathwayko00020,ko00620,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko03040,ko03450,map00020,map00620,map00720,map01100,map01110,map01120,map01130,map01200,map03040,map03450
KEGG ModuleM00009,M00011,M00173,M00352,M00374
GOsGO:0000003,GO:0000245,GO:0000375,GO:0000377,GO:0000389,GO:0000395,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005686,GO:0005737,GO:0005829,GO:0006139,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009566,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0019953,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0034622,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043900,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0045292,GO:0045595,GO:0045694,GO:0046483,GO:0050789,GO:0050793,GO:0050794,GO:0051239,GO:0051704,GO:0065003,GO:0065007,GO:0070013,GO:0071004,GO:0071010,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1902494,GO:1990904,GO:2000026,GO:2000241
EggNOG free text desc.Subtilase family
EggNOG OGsCOG5188@1,KOG2636@2759
EC4.2.1.2,6.5.1.1
COG Functional cat.AO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDomain of unknown function DUF3449
Ec32 orthologEc-00_011370.1
Exons2
Model size252
Cds size252
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930982.1556785-CDS-Ecto-sp9_F_contig9111:4780..49271622930982.1556785-CDS-Ecto-sp9_F_contig9111:4780..4927Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9111 4781..4927 -
1692278979.2295403-CDS-Ecto-sp9_F_contig9111:4780..49271692278979.2295403-CDS-Ecto-sp9_F_contig9111:4780..4927Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9111 4781..4927 -
1622930982.1742587-CDS-Ecto-sp9_F_contig9111:5338..54431622930982.1742587-CDS-Ecto-sp9_F_contig9111:5338..5443Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9111 5339..5443 -
1692278979.2421167-CDS-Ecto-sp9_F_contig9111:5338..54431692278979.2421167-CDS-Ecto-sp9_F_contig9111:5338..5443Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9111 5339..5443 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9111.17306.1prot_Ecto-sp9_F_contig9111.17306.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9111 4781..5443 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9111.17306.1

>prot_Ecto-sp9_F_contig9111.17306.1 ID=prot_Ecto-sp9_F_contig9111.17306.1|Name=mRNA_Ecto-sp9_F_contig9111.17306.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=84bp
RRNFDRHFQEWRHAHGMRCLGIPNTKHFHDIVLIQDARDLYAKIKDSLDK
EQWNPEDNEEYEDGEGNVLNRRTYEDLARQGLM*
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mRNA from alignment at Ecto-sp9_F_contig9111:4781..5443-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9111.17306.1 ID=mRNA_Ecto-sp9_F_contig9111.17306.1|Name=mRNA_Ecto-sp9_F_contig9111.17306.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=663bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9111:4781..5443- (Ectocarpus species9 EcSCA_722f female)
CGCAGGAATTTTGACCGGCACTTCCAAGAATGGCGTCACGCGCACGGCAT
GCGATGCTTGGGCATCCCGAATACGAAGCACTTCCACGACATCGTCCTTA
TCCAGGTGGGGCGGCAGGCAGAATAATTATTTGGTAGAGACATCTGCCAG
CAACAATTGGTGAAGATATCTACCAGCTCTTCTGATGTGCGGTGTGTGTT
GCACGTGAACGATGCTGGTCATGTTCGACTCAATCACGGCACCTTGATGA
TGGCAACATTGGAACGCAGTGTTGCGGTGAACAGCAGCACTTGGCCTTTC
TTCTGGCATCACTCTTTGGAAACTAGACATAGAAACGTTGACGGTTTCGT
GTATCAGTGTGGGCAACGTGGGGTGTCTGGTGGTCAAGAATTCACAGACT
CACCAATCCCCCAGTAGATCACTGCAGCGATAACGTGTTGACCCCTCCAA
GCAAAGATGGCTACAAATAAACAACGTTGTTCTCTCGACGATTGCGTCTC
TCTGCTGGTCATGCAGGACGCACGAGACCTCTACGCCAAGATCAAAGACT
CGTTGGACAAGGAGCAGTGGAACCCCGAAGACAACGAGGAGTACGAAGAC
GGGGAGGGCAACGTGCTCAACAGACGCACTTACGAGGACTTGGCCCGCCA
AGGCCTCATGTAA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9111:4781..5443-

>mRNA_Ecto-sp9_F_contig9111.17306.1 ID=mRNA_Ecto-sp9_F_contig9111.17306.1|Name=mRNA_Ecto-sp9_F_contig9111.17306.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=504bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9111:4781..5443- (Ectocarpus species9 EcSCA_722f female)
CGCAGGAATTTTGACCGGCACTTCCAAGAATGGCGTCACGCGCACGGCAT
GCGATGCTTGGGCATCCCGAATACGAAGCACTTCCACGACATCGTCCTTA
TCCAGCGCAGGAATTTTGACCGGCACTTCCAAGAATGGCGTCACGCGCAC
GGCATGCGATGCTTGGGCATCCCGAATACGAAGCACTTCCACGACATCGT
CCTTATCCAGGACGCACGAGACCTCTACGCCAAGATCAAAGACTCGTTGG
ACAAGGAGCAGTGGAACCCCGAAGACAACGAGGAGTACGAAGACGGGGAG
GGCAACGTGCTCAACAGACGCACTTACGAGGACTTGGCCCGCCAAGGCCT
CATGTAAGACGCACGAGACCTCTACGCCAAGATCAAAGACTCGTTGGACA
AGGAGCAGTGGAACCCCGAAGACAACGAGGAGTACGAAGACGGGGAGGGC
AACGTGCTCAACAGACGCACTTACGAGGACTTGGCCCGCCAAGGCCTCAT
GTAA
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