mRNA_Ecto-sp9_F_contig9083.17269.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9083.17269.1
Unique NamemRNA_Ecto-sp9_F_contig9083.17269.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig9083.17269.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR92_ECTSI)

HSP 1 Score: 587 bits (1513), Expect = 2.470e-209
Identity = 324/336 (96.43%), Postives = 329/336 (97.92%), Query Frame = 1
Query:    1 VWWREENSYLSRFSLTQKMQGLVRPLIYVVIGYGVGGPQLLGLDHKELKVVAKLAALALALMAASMLTQHYGNRLTPWIRRSSTILITAFAVVYGIYLLLAHTKYTKVAVGLYYVAAAGSTVGLLMGYKFARFTWHIHDFVIGHLLFIILFLLSALKFPSLVQTWLLFHNALSEGVVIDDILKYARMNKELAGVDEDSLEFSSELKKIVEAQAAELELLKQRIMSGGGGAFIGINGSPLQQXXXXXXXXXXXXVGAGEEEGMAGSVYSTGSGGYSYMMQPLGGDGPDAAPTNRAEMMRPSNSTLDLADMANAKASTTEPPPSQAFQFSSPMSMPPR 1008
            VWWREENSYLSRFSLTQKMQGLVRPLIYVVIGYG+GGPQLLGLDHKELKVVAKLAALALALMAAS+LTQHYGNRLTPWIRRSS ILITAFAVVYGIYLLLAHTKYTKVAVGLYYVAAAGSTVGLLMG+KFARFTWH+HDFVIGHLLFIIL LLSALKFPSLVQTWLLFHNALSEGVVIDDILKYARMNKELAGVDEDSLE SSELKKIVEAQAAELELLKQRIMSGGGG+FIGINGSPLQQXXXXXXXXX   VGAGEE GMAGSVYSTGSGGYSYMMQPLGGDGPDAAPTNRAEMMRPSNSTLDLADMANAKASTTEPPPSQAFQFSSPMSMPPR
Sbjct:   74 VWWREENSYLSRFSLTQKMQGLVRPLIYVVIGYGIGGPQLLGLDHKELKVVAKLAALALALMAASVLTQHYGNRLTPWIRRSSAILITAFAVVYGIYLLLAHTKYTKVAVGLYYVAAAGSTVGLLMGFKFARFTWHVHDFVIGHLLFIILLLLSALKFPSLVQTWLLFHNALSEGVVIDDILKYARMNKELAGVDEDSLESSSELKKIVEAQAAELELLKQRIMSGGGGSFIGINGSPLQQXXXXXXXXXAG-VGAGEE-GMAGSVYSTGSGGYSYMMQPLGGDGPDAAPTNRAEMMRPSNSTLDLADMANAKASTTEPPPSQAFQFSSPMSMPPR 407          
BLAST of mRNA_Ecto-sp9_F_contig9083.17269.1 vs.
Match: 1,3-beta-glucan (synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFR3_9PHAE)

HSP 1 Score: 531 bits (1367), Expect = 6.650e-170
Identity = 299/317 (94.32%), Postives = 304/317 (95.90%), Query Frame = 1
Query:   58 QGLVRPLIYVVIGYGVGGPQLLGLDHKELKVVAKLAALALALMAASMLTQHYGNRLTPWIRRSSTILITAFAVVYGIYLLLAHTKYTKVAVGLYYVAAAGSTVGLLMGYKFARFTWHIHDFVIGHLLFIILFLLSALKFPSLVQTWLLFHNALSEGVVIDDILKYARMNKELAGVDEDSLEFSSELKKIVEAQAAELELLKQRIMSGGGGAFIGINGSPLQQXXXXXXXXXXXXVGAGEEEGMAGSVYSTGSGGYSYMMQPLGGDGPDAAPTNRAEMMRPSNSTLDLADMANAKASTTEPPPSQAFQFSSPMSMPPR 1008
            +GLVRPLIYVVIGYGVGGPQLLGLDHKELKVVAKLAALALALMAASMLTQHYGNRLTPWIRRSSTILIT FAVVYGIYLLLAHTKYTKVAVGLYYVAAAGSTVGLLMGYKFARFTWHIHDFVIGHLLFIILFLLSALKFPSLVQTWLLFHNALSEGVVIDDILKYARMNKELAGVDEDSLE SSELKKIVEAQAAELELLKQRIMSGGGGAFIGINGSP Q XXXXXXXXX   VGAG EE MAGSVYST SGGYSYMMQPLGGDGPDA P NRAEMM PSNS+L+LADMANA+ASTTEPPPSQAFQFSSP+SMPPR
Sbjct: 1904 EGLVRPLIYVVIGYGVGGPQLLGLDHKELKVVAKLAALALALMAASMLTQHYGNRLTPWIRRSSTILITTFAVVYGIYLLLAHTKYTKVAVGLYYVAAAGSTVGLLMGYKFARFTWHIHDFVIGHLLFIILFLLSALKFPSLVQTWLLFHNALSEGVVIDDILKYARMNKELAGVDEDSLESSSELKKIVEAQAAELELLKQRIMSGGGGAFIGINGSPHQXXXXXXXXXX---VGAGNEECMAGSVYSTDSGGYSYMMQPLGGDGPDAVP-NRAEMMHPSNSSLNLADMANARASTTEPPPSQAFQFSSPVSMPPR 2216          
BLAST of mRNA_Ecto-sp9_F_contig9083.17269.1 vs.
Match: 1,3-beta-glucan (synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1S2_9STRA)

HSP 1 Score: 225 bits (574), Expect = 1.680e-62
Identity = 149/356 (41.85%), Postives = 206/356 (57.87%), Query Frame = 1
Query:    1 VWWREENSYLSRFSLTQKMQGLVRPLIYVVIGYGVGGP---QLLGLDHKELKVVAKLAALALALMAASMLTQHYGNRLTPWIRRSSTILITAFAVVYGIYLLLAHTKYTKVAVGLYYVAAAGSTVGLLMGYKFARFTWHIHDFVIGHLLFIILFLLSALKFPSLVQTWLLFHNALSEGVVIDDILKYARMNKELAGVDEDSLEFSSELKKIVEAQAAELELLKQRIMSGGGGAFIGINGSPLQQXXXXXXXXXXXXVGAGEEEGMAG--SVYSTGSGGYSYMMQPLGGDGPDAAPTNR----AEMMRPSNSTLDLADMANAKASTTEPPP-----------SQAFQFSSPMSMPPR 1008
            VWWRE+N Y+S+F L QK+Q +++P  Y+VIG G+  P   +L  L  KE++ + K+++LALAL+    +    G+  TPWIRRS  ++I++     GI L++ H +Y ++A+GLYYV AA S V +L+G+   R  +HIHDF++GH+LF+ LFL++AL+FP  VQTWLLFHNALS+GVVI+DILKYAR N+E    +ED L+ ++ELKK+++ Q   L+ L  R  + GGG     NG P                  G E G A   S  S G G    +  PL  D  D A ++     A MMR S STLDL+ MA+                      QAFQF  P   PPR
Sbjct: 1991 VWWREDNGYMSKFGLGQKLQCMLKPAFYLVIGVGIATPKMAELQDLKPKEVQAIIKVSSLALALLLGYAIVDKCGH--TPWIRRSGKLIISSVVFCGGIALMIKHYEYIRIAIGLYYVLAALSGVCVLLGFTGMRVAYHIHDFILGHVLFLALFLMAALQFPKDVQTWLLFHNALSQGVVIEDILKYARKNQEATAGNEDKLDDTAELKKLIKHQEYMLQQLMARAAAHGGGT----NGVPN-----------------GRENGAASRTSSLSGGDGRPGVLTMPLADD--DGADSDTSVAPASMMRASRSTLDLSKMASTSXXXXXXXXXXXXXXXXLAQQQAFQFRGPAHFPPR 2321          
BLAST of mRNA_Ecto-sp9_F_contig9083.17269.1 vs.
Match: 1,3-beta-glucan (synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4B5_9STRA)

HSP 1 Score: 136 bits (343), Expect = 8.100e-32
Identity = 74/190 (38.95%), Postives = 111/190 (58.42%), Query Frame = 1
Query:    1 VWWREENSYLSRFSLTQKMQGLVRPLIYVVIGYGVGGPQLLGLDHKELKVVAKLAALALALMAASMLTQHYGNRLTPWIRRSSTILITAFAVVYGIYLLLAHTKYTKVAVGLYYVAAAGSTVGLLMGYKFARFTWHIHDFVIGHLLFIILFLLSALKFPSLVQTWLLFHNALSEGVVIDDILKYARMNKE 570
            VWWREEN Y+S+F L QK+Q +++P  Y+V+G                                         R T   R    +LI+      G+YL++   +Y ++A+GLYYV +A  +V +L+G++  R  +HIHDF++G+++F++LF+ +AL+ P  VQTWLLFHNALS+GVVI+DILKYAR  +E
Sbjct: 1592 VWWREENLYVSKFGLGQKLQCMLKPAFYLVVG------------------------------------PRISTRAT---RLPGKLLISTAVFYGGVYLMVTEYEYIRIAIGLYYVISAVGSVSVLLGFEGIRHAYHIHDFILGNIMFLVLFIFAALQLPKNVQTWLLFHNALSQGVVIEDILKYARRTQE 1742          
BLAST of mRNA_Ecto-sp9_F_contig9083.17269.1 vs.
Match: Hypothetical (protein n=3 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JUC2_9STRA)

HSP 1 Score: 128 bits (321), Expect = 6.160e-29
Identity = 80/232 (34.48%), Postives = 133/232 (57.33%), Query Frame = 1
Query:    1 VWWREENSYLSRFSLTQKMQGLVRPLIYVVIGYGVGGPQLLGLD---HKELKVVAKLAALALALMAASMLTQHYGNRLTPWIRRSSTILITAFAVVYGIYLLLAHTKYTKVAVGLYYVAAAGSTVGLLMGYKFARFTWHIHDFVIGHLLFIILFLLSALKFPSLVQTWLLFHNALSEGVVIDDILKYARMNKELAGVDEDSL-EFSSELKKIVEAQAAELELLKQRIMSGGG 684
            VWW EENSY S+  ++ K+  +++ L+Y  I  G+    L  +D    K    V+K+A   + L   S +       ++  IRRS   +++    V  + + +      + ++  YY   + + +GLL G+KF +  + +HD V+GH+LF+ LF+L+AL+ P+ +QTWLL+HNALS  VV+DDIL+YA+ + +  G  +D L E  +ELKK+V+ Q       ++ + SGGG
Sbjct: 1217 VWWSEENSYYSKLPVSSKLLFIIKTLVYYCIADGIRRSDLFDVDTSLSKPFVSVSKVAIFLVVLFILSRIFVATERDMSYPIRRSLGAILSLGMAVSVVTVFIEDPNCIRYSLAAYYYIGSIALLGLLFGFKFVKHVYLVHDLVVGHILFLPLFVLAALQIPNYIQTWLLYHNALSGDVVVDDILRYAKKSMKSDGSGDDDLKEQVAELKKLVQRQ-------EEMLRSGGG 1441          
BLAST of mRNA_Ecto-sp9_F_contig9083.17269.1 vs.
Match: 1,3-beta-glucan (synthase n=4 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FQP6_PHATC)

HSP 1 Score: 127 bits (319), Expect = 1.190e-28
Identity = 112/346 (32.37%), Postives = 174/346 (50.29%), Query Frame = 1
Query:    1 VWWREENSYLSRFSLTQKMQGLVRPLIYVVIGYGVGGPQL----LGLDHKELKVVAKLAALALALMAASMLTQHYGNRLTPW-IRRSSTILITAFAVVYGIYLLLAHTKYTKVAVGLYYVAAAGSTVGLLMGYKFARFTWHIHDFVIGHLLFIILFLLSALKFPSLVQTWLLFHNALSEGVVIDDILKYARMNKEL-AGVD--EDSLEFSSELKKIVEAQAAELELLKQRIMSGGGGAFIGINGSPLQQXXXXXXXXXXXXVGAGEEEGMAGSVYSTGSGGYSYMMQPLGGD--GPDAAPTNRAEMMRPSNSTLDLADMANAKASTTEPPPSQAFQFSSPMSMPPR 1008
            +W+ EENS+  +  LT K+  L++ ++Y+VIG G+    L    + L+   + V   L  LA+ ++   + + H   R  P+ +RR+  ILI +      I L +  T Y +  +  YY   A    GLL G++  ++ + +HD V  HL+FI LF+L AL+ P ++QTWLL+HNALS  VV+ DIL+YAR  +E  AG +  ED +E  SEL+K+V+ Q       +Q + S G   F G +G  +              + A ++  +  +  S    GY   +   G D  G  A    +AE +R ++ T D          TT    +Q F FS P +MPPR
Sbjct: 1800 MWYNEENSFWKQLPLTSKLLYLIKAVVYLVIGEGIRRSALFRSDITLNPPTIGVGKILIFLAVLIVVGRIFSAH--ERTMPYPVRRTIGILIFSGMFAGIITLFIEDTNYIRYGMAAYYGLGAVCLAGLLFGFRIVKYLYWLHDIVCAHLIFIPLFILGALQLPGMIQTWLLYHNALSTDVVVSDILRYARKTQESGAGGEKTEDLVEQISELRKVVQRQ-------EQALASAG---FTGGDGQLVSSASIGSAMSNNYLISAPDQPQIRQA--SDAGRGYGRALSLSGLDVWGNMALGDVQAEDLRQTDLTPDTIPQRGTPGQTTTV--AQGFSFSQPDTMPPR 2129          
BLAST of mRNA_Ecto-sp9_F_contig9083.17269.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV62_9STRA)

HSP 1 Score: 126 bits (317), Expect = 2.090e-28
Identity = 82/222 (36.94%), Postives = 132/222 (59.46%), Query Frame = 1
Query:    1 VWWREENSYLSRFSLTQKMQGLVRPLIYVVIGYGVGGPQLLGLDHKELKVVAKLAALALALMAASMLTQHYGNRLTPWIRRSSTILITAFAVVYGIYLLLAHTKYTKVAVGLYYVAAA-GSTVGLLMGYKFARFTWHIHDFVIGHLLFIILFLLSALKFPSLVQTWLLFHNALSEGVVIDDILKYARMNKELAGVDEDSLEFSSELKKIVEAQAAELELLKQ 663
            VWW+EE  Y  + + TQ++  L + LI++ I YG+  P+      K++  VA+ ++  +A++   +L     +R+   +RR   I++    +V    LL  H  Y K  V +YY+ A    T+ L       +F + +HD  +GH++FI LF+L+AL+ P+ VQTWLLFHNALS+GVV+DDILKYAR +KE  GV+E  L   +E++K+++ Q   ++   Q
Sbjct: 1369 VWWKEEMGYFKQVAPTQRLYILPKSLIWMGIAYGIVTPKFFTGGLKDVVNVAEGSSFFVAVILIYILVNKSASRMHSSLRRCLKIVLVLGFIVGVAVLLAKHPTYAKFLVAVYYLLAGICHTLCLFEIIAPTKFLFKVHDIFMGHVMFIGLFILAALQLPAKVQTWLLFHNALSQGVVVDDILKYARRSKE-EGVEEMDL---TEMRKVIQHQEHVIQTFMQ 1586          
BLAST of mRNA_Ecto-sp9_F_contig9083.17269.1 vs.
Match: 1,3-beta-glucan (synthase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JIZ9_FISSO)

HSP 1 Score: 124 bits (312), Expect = 9.810e-28
Identity = 80/222 (36.04%), Postives = 123/222 (55.41%), Query Frame = 1
Query:    1 VWWREENSYLSRFSLTQKMQGLVRPLIYVVIGYGVGGPQLLGLDHKELKVVAKLAALALALMAASMLTQHY--GNRLTPW-IRRSSTILITAFAVVYGIYLLLAHTKYTKVAVGLYYVAAAGSTVGLLMGYKFARFTWHIHDFVIGHLLFIILFLLSALKFPSLVQTWLLFHNALSEGVVIDDILKYARMNKELAGVDE---DSLEFSSELKKIVEAQAAEL 648
            +WW EE ++     LT K+   V+  +Y+++  G+    L   D    K +  +  + + + A  +L + +    R  P+ +RR+  I I    +   + L L  + Y + A+  YY   A   +GLL G K  +  + +HD V GHL+FI LFLL+AL+ P L+QTWLL+HNALS  VV+ DIL+YAR ++E  G+ +   D LE  SELKK+V+ Q   L
Sbjct: 1699 MWWNEETAFYKNIPLTSKLMFCVKSALYLLVAEGIRRSNLFRSDASLNKPIVAVGNVLIFIGALLVLERGFIASERSFPYPVRRTIGIAIFCGLIAGVVTLFLEDSNYVRYALSAYYALGALCQIGLLAGVKLVKHFYMLHDIVCGHLIFIPLFLLAALQLPRLLQTWLLYHNALSADVVVSDILRYARKSQESGGMTDAPDDLLEQISELKKLVQRQEQAL 1920          
BLAST of mRNA_Ecto-sp9_F_contig9083.17269.1 vs.
Match: Uncharacterized (protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K6M3_FISSO)

HSP 1 Score: 122 bits (305), Expect = 1.830e-27
Identity = 78/222 (35.14%), Postives = 122/222 (54.95%), Query Frame = 1
Query:    1 VWWREENSYLSRFSLTQKMQGLVRPLIYVVIGYGVGGPQLLGLDHKELKVVAKLAALALALMAASMLTQHY--GNRLTPW-IRRSSTILITAFAVVYGIYLLLAHTKYTKVAVGLYYVAAAGSTVGLLMGYKFARFTWHIHDFVIGHLLFIILFLLSALKFPSLVQTWLLFHNALSEGVVIDDILKYARMNKELAGVDE---DSLEFSSELKKIVEAQAAEL 648
            +WW EE ++      T K+   V+  +Y+++  G+    L   D    K +  +  + + + A  +L + +    R  P+ +RR+  I I    +   + L +  + Y + A+  YY   A   +GLL G K  +  + +HD V GHL+FI LFLL+AL+ P L+QTWLL+HNALS  VV+ DIL+YAR ++E  G+ +   D LE  SELKK+V+ Q   L
Sbjct:  168 MWWNEETAFYKSIPFTSKLMFCVKSALYLLVAEGIRRSNLFRSDASLNKPIVAVGNVLIFIGALLVLERGFIASERSFPYPVRRTIGIAIFCGLIAGVVTLFIEDSNYVRYALSAYYALGALCQIGLLAGVKLVKHFYMLHDIVCGHLIFIPLFLLAALQLPRLLQTWLLYHNALSADVVVSDILRYARKSQESGGMTDAPDDLLEQISELKKLVQRQEQAL 389          
BLAST of mRNA_Ecto-sp9_F_contig9083.17269.1 vs.
Match: 1,3-beta-glucan (synthase n=4 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FM30_9STRA)

HSP 1 Score: 119 bits (298), Expect = 6.760e-26
Identity = 79/231 (34.20%), Postives = 132/231 (57.14%), Query Frame = 1
Query:    1 VWWREENSYLSRFSLTQKMQGLVRPLIYVVIGYGVGGPQLLGLDHKELKVVAKLAALAL---ALMAASMLTQHYGNRLTPWIRRSSTILITAFAVVYGIYLLLAHTKYTKVAVGLYYVAAAGSTVGLLMGY-KFARFTWHIHDFVIGHLLFIILFLLSALKFPSLVQTWLLFHNALSEGVVIDDILKYARMNKELAGVDEDSLEFSSELKKIVEAQAAELELLKQRIMSGG 681
            +WW +ENSY  + + + K+  + + ++YVV+  G+    +   D   +    K+  +      L+   ML   Y N L+   RR+   LIT   ++    +L   T + +  +  YY+  A   +GLL G  KF ++ + +HD ++GH++F  +FLL+A++F S++QTW L+HNALS  VV +DIL++AR N++ AG D + +   +ELKKIV  QA   E L++ I +GG
Sbjct: 1791 MWWTDENSYYHKLNFSSKLFFVCKAMVYVVLAEGIYQSDIFEPDQNLVSPYFKMKYVLTFFGILVFFLMLYVVYANTLSYVTRRTLGNLITVSILLTIGTILKEDTNFIRYLISAYYLIGALCMIGLLFGAAKFVKYFYLVHDLIVGHIMFFFIFLLAAMQFVSVMQTWGLYHNALSSDVVANDILRHARKNQQSAGDDSEQI---TELKKIVRKQA---ETLQKIIQTGG 2015          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9083.17269.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized2.470e-20996.43protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
1,3-beta-glucan6.650e-17094.32synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID... [more]
1,3-beta-glucan1.680e-6241.85synthase n=1 Tax=Tribonema minus TaxID=303371 RepI... [more]
1,3-beta-glucan8.100e-3238.95synthase n=1 Tax=Tribonema minus TaxID=303371 RepI... [more]
Hypothetical6.160e-2934.48protein n=3 Tax=Leptocylindrus danicus TaxID=16351... [more]
1,3-beta-glucan1.190e-2832.37synthase n=4 Tax=Phaeodactylum tricornutum TaxID=2... [more]
Hypothetical2.090e-2836.94protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
1,3-beta-glucan9.810e-2836.04synthase n=1 Tax=Fistulifera solaris TaxID=1519565... [more]
Uncharacterized1.830e-2735.14protein n=1 Tax=Fistulifera solaris TaxID=1519565 ... [more]
1,3-beta-glucan6.760e-2634.20synthase n=4 Tax=Corethron hystrix TaxID=216773 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9083contigEcto-sp9_F_contig9083:656..5021 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score594.0
Seed ortholog evalue4.5e-167
Seed eggNOG ortholog2880.D7FR92
KEGG koko:K11000
EggNOG free text desc.1,3-beta-D-glucan synthase activity
EggNOG OGsKOG0916@1,KOG0916@2759
COG Functional cat.S
CAZyGT48
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01003
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGlycosyl transferase, family 48
Ec32 orthologEc-08_004920.2
Exons6
Model size1011
Cds size1011
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9083.17269.1prot_Ecto-sp9_F_contig9083.17269.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9083 656..5021 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930976.429267-CDS-Ecto-sp9_F_contig9083:655..7871622930976.429267-CDS-Ecto-sp9_F_contig9083:655..787Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9083 656..787 -
1692278976.1025221-CDS-Ecto-sp9_F_contig9083:655..7871692278976.1025221-CDS-Ecto-sp9_F_contig9083:655..787Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9083 656..787 -
1622930976.4657972-CDS-Ecto-sp9_F_contig9083:1415..16281622930976.4657972-CDS-Ecto-sp9_F_contig9083:1415..1628Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9083 1416..1628 -
1692278976.1156654-CDS-Ecto-sp9_F_contig9083:1415..16281692278976.1156654-CDS-Ecto-sp9_F_contig9083:1415..1628Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9083 1416..1628 -
1622930976.4819598-CDS-Ecto-sp9_F_contig9083:1876..20531622930976.4819598-CDS-Ecto-sp9_F_contig9083:1876..2053Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9083 1877..2053 -
1692278976.1280756-CDS-Ecto-sp9_F_contig9083:1876..20531692278976.1280756-CDS-Ecto-sp9_F_contig9083:1876..2053Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9083 1877..2053 -
1622930976.506183-CDS-Ecto-sp9_F_contig9083:2638..28161622930976.506183-CDS-Ecto-sp9_F_contig9083:2638..2816Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9083 2639..2816 -
1692278976.1379707-CDS-Ecto-sp9_F_contig9083:2638..28161692278976.1379707-CDS-Ecto-sp9_F_contig9083:2638..2816Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9083 2639..2816 -
1622930976.5236769-CDS-Ecto-sp9_F_contig9083:4301..44651622930976.5236769-CDS-Ecto-sp9_F_contig9083:4301..4465Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9083 4302..4465 -
1692278976.1484103-CDS-Ecto-sp9_F_contig9083:4301..44651692278976.1484103-CDS-Ecto-sp9_F_contig9083:4301..4465Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9083 4302..4465 -
1622930976.5381143-CDS-Ecto-sp9_F_contig9083:4874..50211622930976.5381143-CDS-Ecto-sp9_F_contig9083:4874..5021Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9083 4875..5021 -
1692278976.159784-CDS-Ecto-sp9_F_contig9083:4874..50211692278976.159784-CDS-Ecto-sp9_F_contig9083:4874..5021Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9083 4875..5021 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9083.17269.1

>prot_Ecto-sp9_F_contig9083.17269.1 ID=prot_Ecto-sp9_F_contig9083.17269.1|Name=mRNA_Ecto-sp9_F_contig9083.17269.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=337bp
VWWREENSYLSRFSLTQKMQGLVRPLIYVVIGYGVGGPQLLGLDHKELKV
VAKLAALALALMAASMLTQHYGNRLTPWIRRSSTILITAFAVVYGIYLLL
AHTKYTKVAVGLYYVAAAGSTVGLLMGYKFARFTWHIHDFVIGHLLFIIL
FLLSALKFPSLVQTWLLFHNALSEGVVIDDILKYARMNKELAGVDEDSLE
FSSELKKIVEAQAAELELLKQRIMSGGGGAFIGINGSPLQQQQQQGGGGG
GAGVGAGEEEGMAGSVYSTGSGGYSYMMQPLGGDGPDAAPTNRAEMMRPS
NSTLDLADMANAKASTTEPPPSQAFQFSSPMSMPPR*
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mRNA from alignment at Ecto-sp9_F_contig9083:656..5021-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9083.17269.1 ID=mRNA_Ecto-sp9_F_contig9083.17269.1|Name=mRNA_Ecto-sp9_F_contig9083.17269.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4366bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9083:656..5021- (Ectocarpus species9 EcSCA_722f female)
GTGTGGTGGCGCGAGGAGAACTCGTACCTCTCTCGCTTCTCGCTCACCCA GAAGATGCAGGGCCTCGTCCGGCCGCTCATCTACGTGGTGATCGGCTACG GCGTCGGGGGTCCGCAGCTGCTGGGGCTTGACCACAAGGAGCTCAAGGTG CGATTGTGATGAGAGAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGTGCT ATCCTCCGCTCGATGCAACACCTGTCTCGACTGTTGTGTAGAACGAGCGA TGAGAGGACGGGGGGGAGAGGTGCTGTCCTCGGTGCGATGCGACGCTGTT CTTGGCTGTAGCGAGCGGTGTGTCTACATACGAGCACGCCAGTCTTTTTC GATGTTGGACGACGTGGTCCATGTCGTACCTCGCGTGCGCGTGCTGTTGA TTCGTGTCCATGTCTTGTGTACGCCATTTTTGGTCCGCGGCATATCTCGT CTCTGCGCCATTTTCCATCCGCCCTGTCGTTGACGTGAGAAGTTTCTGCT TAGACGGGGCTTTTAACCCCTGCCGTCTTTTTTTGTTGGCCGACCACGAC GCGCAGGTGGTGGCGAAACTGGCCGCGCTCGCGTTGGCTCTCATGGCGGC GTCCATGCTCACGCAGCACTACGGGAACAGGCTGACCCCCTGGATCCGTC GTTCCTCGACGATCCTCATCACCGCCTTCGCGGTCGTATACGGCATCTAC CTGCTACTGGCGCACACCAAGTGAGAAACTAAATATGATGGGCTTGCTGT TGCTGTGGTGTTTTTTACAAAGTGTTGTTGCCGTGGTCATTTTCGGTGAG AGTTGTTGCCCCTGTGGCTGCCGTGATGGTTGTTGTTGTGGTGGTGGTGG TGGTCGCTTGTGCTCGAAGAGTCGCCAACTGTTGCCGTCTGTGCGCGGCT CGGAACCCCCCCCCCCCGCACCCGAAACAGCTTTCGTTCACCTGCGTTGC AGCCCATGGAAAATGAAAAAAATACGGAGACAAAAAAATTATGGGTACCT CCACAATTTTCCGGAACCCCTCTGAATTATTGCTGCTCAGCATTCCAGGT CGCCCTGTTAGCCATCACTCGTACAACTGGCACAGAACGCAGATCTCCAT GAAACTGGCAGACGAGCCCATTATAGTCCTGACCCACGCCTGCAAGCAGT TTTCACGCCGTGATTTCACTTTCAGCTCGAGATTTGCTTCGCCATGCCGA TCGGTTGCTGTTGCGAAAACCCTGTTTTTCAGCTCTCTTGGGGGCCAACT TCCGCAGGCCGTTGCGGTCCGTAAACGGGACTACGTCCTTCGTGACTTCG CCACACGGCAGAAGGATAACCACAGAACCCAATGCACAGGTCTAGAATTT TGGATCTGCATCATATCGCCCGCCATGGGTCTGCAAAGGTCACGTAGAAT CGACACCAACTTGCCTCTAAACGCGAGTAGTTAGCAGCGGCGCAATTAGC GCGTGGAAAAAAAGGCCCACGTCTCCGTTTTCATGTCCTCACGGAGCCTC TGGCCAGGCTTTGCAGCGCTGTCGCGGTCTAGAAACTGTATAAAAAATTC TGGTGCTCGGGTACAGTGTAGGTTGACCACCATGGATAGAAATACATTTG TCATTAATTTTGGATCAGCACTACGGCAGGAGCTGTTGCAGAATAACCTG GCGGCCTATTCTAGAAAGACAGTAGGGGGCACCGTAGTTTCGCTCCGGTT GTCACGATTAAAAAACAAAAGGTGTTTTTTTCCATGGGCTGCAACGCAGG TGCGTTACCTTCCATGGCCTCCCACACGTACCCTCCCACATAACCTCCAA CGAGAACTTTACAAGTTGCTCTAAGTTCCCTCCCTTCCCCCCCCAGTGCT CGGTACCTTACGACCCTGGGTTGGGGCGAAACCCCCGGGGGGGCTTGGCG GGACGCGACTAGCCTATGCGCGTGGAAGTACGTTATAACCCCTGTGACGA CGAGATCTCGGCCGTCCAACCCTCTCGGCCTGGCGCTGTGACCAACCACC GACCATCCGATGATCCAAAACAATCCAATCCGGTTGAAACATTTTTCGCT GTTGACCACCGACGAACAAAGACCCAAAGCATTCGAAATCGTTTGAAAAG CTTCGCACGCTGGCCACGATGATCCGAAACAATCGAACCCGCTTGAAATC GTTTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT CGCAGGTACACCAAGGTGGCCGTGGGTCTCTACTACGTGGCGGCGGCGGG GTCAACCGTGGGGCTCCTGATGGGGTACAAGTTCGCGCGCTTCACGTGGC ACATCCACGACTTCGTCATCGGCCACCTCCTGTTCATCATCCTCTTCCTG CTGTCGGCTTTGAAGTTCCCCAGCTTGGTGCAGGTATGTGTGGCTTCGTG TTTTTTTTTGTCGACAGTATCGACCGCACCAACCGGGTGACCAATGAAAA GACGTCAGTCGCAATTCGGTTGAAAGCACCAAATGCTTCTACTGAAGGGC ATGGTTTTAGTTGATGACATTGACCTCGCTGACCGGCTGGGCAGTGAGAA GACATGAGTCTCAATTCGGTTGAAAACACCAAATGCGTCTAAAGGCCATG ATCGTGAGTGCTTGTATCTTTGTGTGTTTTCCCCGTACTTCGTTTTACGG CTTTTGGTAACCCTTCCAAAATCTAGCTCAGTACGGTAAAACCTTGCGTT CATGATTTCTGTGTGTATGCTGAGCGGCGAGTACGGAGCGTGAATTGCCA AAGGTAATTAACCTAGAGCCATTTGTAATTGCCCTGTTTACGCCGTCTTG TGAATGGAGTGAATAGTATCCCAACCCCCCCAAGTGGCATACCATCTCTC AACCCAACCCGCCGACGTATCCCCTCCACACACCCACACGCCCCCTCCCC ATCCCCGCGTACACGTATCCCGTCCACCCCCCCTCCTCCCCCCTTTCCAC GCGCACACACGCCTCCAGACGTGGCTCTTGTTCCACAACGCCCTGTCGGA GGGTGTGGTGATCGACGACATTCTCAAGTACGCTCGCATGAACAAGGAGC TTGCCGGTGTGGACGAAGACTCCCTCGAATTCAGCTCGGAGCTGAAGAAG ATCGTGGAGGCCCAGGCGGCCGAGCTCGAGCTCCTCAAGCAAAGGGTGAG AGAAGGAAGGAAGCGGGAGAGATAAAGGGGAAGGTGGCGGAGAGAGAGGG AGAGAGAGGGAGAGAGAGAGAGAGAGAGTTCTGCGAGTAGCATTGACAGA CCGCCCTCTCCGTCTCGCCAATGAAGAGACGTTAGCCTTAGTGCAGAGGG AAAATAAACTCTAGTTCGGCCGCGGCCATAAGTGTATTCATTCCTTGCTG TGGCTCGCAGACTGACTTGCATGTTCCCTTGTGGTCCAAACAGATCATGT CGGGGGGAGGAGGAGCGTTCATCGGCATCAACGGCAGCCCCCTCCAGCAG CAGCAGCAGCAGGGCGGCGGTGGCGGCGGCGCCGGTGTTGGAGCCGGCGA GGAGGAGGGCATGGCCGGGTCGGTCTATTCGACGGGGTCGGGCGGCTACA GCTACATGATGCAGCCTCTGGGAGGGGACGGGCCTGACGCGGCTCCCACC AACCGGGTGAGGAGACACATTCGGCAACAAGCACACTCTTCTACTCCTGA TTTTTTTTTGAAGCGTTAAGCCCGGGTATATTTAACACTACTGCTGTGTC CGCTCAAGTCCCTGTCTTGTGGAAAGCATGGAGGCCACGCTCTAAGCGAA GAATGTTTCCGGTTCCTCAAGTGGCGGATGATGCGTTCGGTGGTACATAC CGTTAGAATCCTCCGGGGAAGATGCGATGATGTTCCTGTTTTCAACGGTT ACACTTTTTTGTGCGTGTACTGCGACGGTGGCGCCTACATGCGCGATCTT CGAAGTCAAGAAAAATTTCTTATTCTTTCAGCATCTACATCAGGGCCGTT GCATGCGCGGCGATCCGTTTGCGTACTCCTTCTTTTTTGCCGCCCTTTCA AATCCCAAGATGGGCTTGAGTCCCTCCCTCCTTCTGTCGCTTGTTCTGGG TACAGGTCCAATGGCATTCAGGGCGTTCAGGGCGTTGACGGCGCCCAACG TGTGCCTTGATTTTTCGTCTCTCTCCTTGTTAGCGTTGACGCCTGCTAAC TTATGCTTTGGTATTTTCGTCTCTCTCGTTCTTGTGTCGACGCCGCCTAA TGTTTGCTTTGTTTTTTTTCGTTACTCTGTATAGGCGGAGATGATGCGCC CCAGCAACAGCACCCTCGACCTCGCGGACATGGCCAACGCCAAGGCTTCA ACCACGGAGCCTCCCCCGAGCCAAGCCTTCCAGTTCAGCTCTCCCATGTC TATGCCGCCCCGCTAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9083:656..5021-

>mRNA_Ecto-sp9_F_contig9083.17269.1 ID=mRNA_Ecto-sp9_F_contig9083.17269.1|Name=mRNA_Ecto-sp9_F_contig9083.17269.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2022bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9083:656..5021- (Ectocarpus species9 EcSCA_722f female)
GTGTGGTGGCGCGAGGAGAACTCGTACCTCTCTCGCTTCTCGCTCACCCA
GAAGATGCAGGGCCTCGTCCGGCCGCTCATCTACGTGGTGATCGGCTACG
GCGTCGGGGGTCCGCAGCTGCTGGGGCTTGACCACAAGGAGCTCAAGGTG
TGGTGGCGCGAGGAGAACTCGTACCTCTCTCGCTTCTCGCTCACCCAGAA
GATGCAGGGCCTCGTCCGGCCGCTCATCTACGTGGTGATCGGCTACGGCG
TCGGGGGTCCGCAGCTGCTGGGGCTTGACCACAAGGAGCTCAAGGTGGTG
GCGAAACTGGCCGCGCTCGCGTTGGCTCTCATGGCGGCGTCCATGCTCAC
GCAGCACTACGGGAACAGGCTGACCCCCTGGATCCGTCGTTCCTCGACGA
TCCTCATCACCGCCTTCGCGGTCGTATACGGCATCTACCTGCTACTGGCG
CACACCAAGTGGTGGCGAAACTGGCCGCGCTCGCGTTGGCTCTCATGGCG
GCGTCCATGCTCACGCAGCACTACGGGAACAGGCTGACCCCCTGGATCCG
TCGTTCCTCGACGATCCTCATCACCGCCTTCGCGGTCGTATACGGCATCT
ACCTGCTACTGGCGCACACCAAGTACACCAAGGTGGCCGTGGGTCTCTAC
TACGTGGCGGCGGCGGGGTCAACCGTGGGGCTCCTGATGGGGTACAAGTT
CGCGCGCTTCACGTGGCACATCCACGACTTCGTCATCGGCCACCTCCTGT
TCATCATCCTCTTCCTGCTGTCGGCTTTGAAGTTCCCCAGCTTGGTGCAG
GTACACCAAGGTGGCCGTGGGTCTCTACTACGTGGCGGCGGCGGGGTCAA
CCGTGGGGCTCCTGATGGGGTACAAGTTCGCGCGCTTCACGTGGCACATC
CACGACTTCGTCATCGGCCACCTCCTGTTCATCATCCTCTTCCTGCTGTC
GGCTTTGAAGTTCCCCAGCTTGGTGCAGACGTGGCTCTTGTTCCACAACG
CCCTGTCGGAGGGTGTGGTGATCGACGACATTCTCAAGTACGCTCGCATG
AACAAGGAGCTTGCCGGTGTGGACGAAGACTCCCTCGAATTCAGCTCGGA
GCTGAAGAAGATCGTGGAGGCCCAGGCGGCCGAGCTCGAGCTCCTCAAGC
AAAGGACGTGGCTCTTGTTCCACAACGCCCTGTCGGAGGGTGTGGTGATC
GACGACATTCTCAAGTACGCTCGCATGAACAAGGAGCTTGCCGGTGTGGA
CGAAGACTCCCTCGAATTCAGCTCGGAGCTGAAGAAGATCGTGGAGGCCC
AGGCGGCCGAGCTCGAGCTCCTCAAGCAAAGGATCATGTCGGGGGGAGGA
GGAGCGTTCATCGGCATCAACGGCAGCCCCCTCCAGCAGCAGCAGCAGCA
GGGCGGCGGTGGCGGCGGCGCCGGTGTTGGAGCCGGCGAGGAGGAGGGCA
TGGCCGGGTCGGTCTATTCGACGGGGTCGGGCGGCTACAGCTACATGATG
CAGCCTCTGGGAGGGGACGGGCCTGACGCGGCTCCCACCAACCGGATCAT
GTCGGGGGGAGGAGGAGCGTTCATCGGCATCAACGGCAGCCCCCTCCAGC
AGCAGCAGCAGCAGGGCGGCGGTGGCGGCGGCGCCGGTGTTGGAGCCGGC
GAGGAGGAGGGCATGGCCGGGTCGGTCTATTCGACGGGGTCGGGCGGCTA
CAGCTACATGATGCAGCCTCTGGGAGGGGACGGGCCTGACGCGGCTCCCA
CCAACCGGGCGGAGATGATGCGCCCCAGCAACAGCACCCTCGACCTCGCG
GACATGGCCAACGCCAAGGCTTCAACCACGGAGCCTCCCCCGAGCCAAGC
CTTCCAGTTCAGCTCTCCCATGTCTATGCCGCCCCGCTAGGCGGAGATGA
TGCGCCCCAGCAACAGCACCCTCGACCTCGCGGACATGGCCAACGCCAAG
GCTTCAACCACGGAGCCTCCCCCGAGCCAAGCCTTCCAGTTCAGCTCTCC
CATGTCTATGCCGCCCCGCTAG
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