mRNA_Ecto-sp9_F_contig9083.17269.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig9083.17269.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR92_ECTSI) HSP 1 Score: 587 bits (1513), Expect = 2.470e-209 Identity = 324/336 (96.43%), Postives = 329/336 (97.92%), Query Frame = 1
Query: 1 VWWREENSYLSRFSLTQKMQGLVRPLIYVVIGYGVGGPQLLGLDHKELKVVAKLAALALALMAASMLTQHYGNRLTPWIRRSSTILITAFAVVYGIYLLLAHTKYTKVAVGLYYVAAAGSTVGLLMGYKFARFTWHIHDFVIGHLLFIILFLLSALKFPSLVQTWLLFHNALSEGVVIDDILKYARMNKELAGVDEDSLEFSSELKKIVEAQAAELELLKQRIMSGGGGAFIGINGSPLQQXXXXXXXXXXXXVGAGEEEGMAGSVYSTGSGGYSYMMQPLGGDGPDAAPTNRAEMMRPSNSTLDLADMANAKASTTEPPPSQAFQFSSPMSMPPR 1008
VWWREENSYLSRFSLTQKMQGLVRPLIYVVIGYG+GGPQLLGLDHKELKVVAKLAALALALMAAS+LTQHYGNRLTPWIRRSS ILITAFAVVYGIYLLLAHTKYTKVAVGLYYVAAAGSTVGLLMG+KFARFTWH+HDFVIGHLLFIIL LLSALKFPSLVQTWLLFHNALSEGVVIDDILKYARMNKELAGVDEDSLE SSELKKIVEAQAAELELLKQRIMSGGGG+FIGINGSPLQQXXXXXXXXX VGAGEE GMAGSVYSTGSGGYSYMMQPLGGDGPDAAPTNRAEMMRPSNSTLDLADMANAKASTTEPPPSQAFQFSSPMSMPPR
Sbjct: 74 VWWREENSYLSRFSLTQKMQGLVRPLIYVVIGYGIGGPQLLGLDHKELKVVAKLAALALALMAASVLTQHYGNRLTPWIRRSSAILITAFAVVYGIYLLLAHTKYTKVAVGLYYVAAAGSTVGLLMGFKFARFTWHVHDFVIGHLLFIILLLLSALKFPSLVQTWLLFHNALSEGVVIDDILKYARMNKELAGVDEDSLESSSELKKIVEAQAAELELLKQRIMSGGGGSFIGINGSPLQQXXXXXXXXXAG-VGAGEE-GMAGSVYSTGSGGYSYMMQPLGGDGPDAAPTNRAEMMRPSNSTLDLADMANAKASTTEPPPSQAFQFSSPMSMPPR 407
BLAST of mRNA_Ecto-sp9_F_contig9083.17269.1 vs.
Match: 1,3-beta-glucan (synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFR3_9PHAE) HSP 1 Score: 531 bits (1367), Expect = 6.650e-170 Identity = 299/317 (94.32%), Postives = 304/317 (95.90%), Query Frame = 1
Query: 58 QGLVRPLIYVVIGYGVGGPQLLGLDHKELKVVAKLAALALALMAASMLTQHYGNRLTPWIRRSSTILITAFAVVYGIYLLLAHTKYTKVAVGLYYVAAAGSTVGLLMGYKFARFTWHIHDFVIGHLLFIILFLLSALKFPSLVQTWLLFHNALSEGVVIDDILKYARMNKELAGVDEDSLEFSSELKKIVEAQAAELELLKQRIMSGGGGAFIGINGSPLQQXXXXXXXXXXXXVGAGEEEGMAGSVYSTGSGGYSYMMQPLGGDGPDAAPTNRAEMMRPSNSTLDLADMANAKASTTEPPPSQAFQFSSPMSMPPR 1008
+GLVRPLIYVVIGYGVGGPQLLGLDHKELKVVAKLAALALALMAASMLTQHYGNRLTPWIRRSSTILIT FAVVYGIYLLLAHTKYTKVAVGLYYVAAAGSTVGLLMGYKFARFTWHIHDFVIGHLLFIILFLLSALKFPSLVQTWLLFHNALSEGVVIDDILKYARMNKELAGVDEDSLE SSELKKIVEAQAAELELLKQRIMSGGGGAFIGINGSP Q XXXXXXXXX VGAG EE MAGSVYST SGGYSYMMQPLGGDGPDA P NRAEMM PSNS+L+LADMANA+ASTTEPPPSQAFQFSSP+SMPPR
Sbjct: 1904 EGLVRPLIYVVIGYGVGGPQLLGLDHKELKVVAKLAALALALMAASMLTQHYGNRLTPWIRRSSTILITTFAVVYGIYLLLAHTKYTKVAVGLYYVAAAGSTVGLLMGYKFARFTWHIHDFVIGHLLFIILFLLSALKFPSLVQTWLLFHNALSEGVVIDDILKYARMNKELAGVDEDSLESSSELKKIVEAQAAELELLKQRIMSGGGGAFIGINGSPHQXXXXXXXXXX---VGAGNEECMAGSVYSTDSGGYSYMMQPLGGDGPDAVP-NRAEMMHPSNSSLNLADMANARASTTEPPPSQAFQFSSPVSMPPR 2216
BLAST of mRNA_Ecto-sp9_F_contig9083.17269.1 vs.
Match: 1,3-beta-glucan (synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1S2_9STRA) HSP 1 Score: 225 bits (574), Expect = 1.680e-62 Identity = 149/356 (41.85%), Postives = 206/356 (57.87%), Query Frame = 1
Query: 1 VWWREENSYLSRFSLTQKMQGLVRPLIYVVIGYGVGGP---QLLGLDHKELKVVAKLAALALALMAASMLTQHYGNRLTPWIRRSSTILITAFAVVYGIYLLLAHTKYTKVAVGLYYVAAAGSTVGLLMGYKFARFTWHIHDFVIGHLLFIILFLLSALKFPSLVQTWLLFHNALSEGVVIDDILKYARMNKELAGVDEDSLEFSSELKKIVEAQAAELELLKQRIMSGGGGAFIGINGSPLQQXXXXXXXXXXXXVGAGEEEGMAG--SVYSTGSGGYSYMMQPLGGDGPDAAPTNR----AEMMRPSNSTLDLADMANAKASTTEPPP-----------SQAFQFSSPMSMPPR 1008
VWWRE+N Y+S+F L QK+Q +++P Y+VIG G+ P +L L KE++ + K+++LALAL+ + G+ TPWIRRS ++I++ GI L++ H +Y ++A+GLYYV AA S V +L+G+ R +HIHDF++GH+LF+ LFL++AL+FP VQTWLLFHNALS+GVVI+DILKYAR N+E +ED L+ ++ELKK+++ Q L+ L R + GGG NG P G E G A S S G G + PL D D A ++ A MMR S STLDL+ MA+ QAFQF P PPR
Sbjct: 1991 VWWREDNGYMSKFGLGQKLQCMLKPAFYLVIGVGIATPKMAELQDLKPKEVQAIIKVSSLALALLLGYAIVDKCGH--TPWIRRSGKLIISSVVFCGGIALMIKHYEYIRIAIGLYYVLAALSGVCVLLGFTGMRVAYHIHDFILGHVLFLALFLMAALQFPKDVQTWLLFHNALSQGVVIEDILKYARKNQEATAGNEDKLDDTAELKKLIKHQEYMLQQLMARAAAHGGGT----NGVPN-----------------GRENGAASRTSSLSGGDGRPGVLTMPLADD--DGADSDTSVAPASMMRASRSTLDLSKMASTSXXXXXXXXXXXXXXXXLAQQQAFQFRGPAHFPPR 2321
BLAST of mRNA_Ecto-sp9_F_contig9083.17269.1 vs.
Match: 1,3-beta-glucan (synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4B5_9STRA) HSP 1 Score: 136 bits (343), Expect = 8.100e-32 Identity = 74/190 (38.95%), Postives = 111/190 (58.42%), Query Frame = 1
Query: 1 VWWREENSYLSRFSLTQKMQGLVRPLIYVVIGYGVGGPQLLGLDHKELKVVAKLAALALALMAASMLTQHYGNRLTPWIRRSSTILITAFAVVYGIYLLLAHTKYTKVAVGLYYVAAAGSTVGLLMGYKFARFTWHIHDFVIGHLLFIILFLLSALKFPSLVQTWLLFHNALSEGVVIDDILKYARMNKE 570
VWWREEN Y+S+F L QK+Q +++P Y+V+G R T R +LI+ G+YL++ +Y ++A+GLYYV +A +V +L+G++ R +HIHDF++G+++F++LF+ +AL+ P VQTWLLFHNALS+GVVI+DILKYAR +E
Sbjct: 1592 VWWREENLYVSKFGLGQKLQCMLKPAFYLVVG------------------------------------PRISTRAT---RLPGKLLISTAVFYGGVYLMVTEYEYIRIAIGLYYVISAVGSVSVLLGFEGIRHAYHIHDFILGNIMFLVLFIFAALQLPKNVQTWLLFHNALSQGVVIEDILKYARRTQE 1742
BLAST of mRNA_Ecto-sp9_F_contig9083.17269.1 vs.
Match: Hypothetical (protein n=3 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JUC2_9STRA) HSP 1 Score: 128 bits (321), Expect = 6.160e-29 Identity = 80/232 (34.48%), Postives = 133/232 (57.33%), Query Frame = 1
Query: 1 VWWREENSYLSRFSLTQKMQGLVRPLIYVVIGYGVGGPQLLGLD---HKELKVVAKLAALALALMAASMLTQHYGNRLTPWIRRSSTILITAFAVVYGIYLLLAHTKYTKVAVGLYYVAAAGSTVGLLMGYKFARFTWHIHDFVIGHLLFIILFLLSALKFPSLVQTWLLFHNALSEGVVIDDILKYARMNKELAGVDEDSL-EFSSELKKIVEAQAAELELLKQRIMSGGG 684
VWW EENSY S+ ++ K+ +++ L+Y I G+ L +D K V+K+A + L S + ++ IRRS +++ V + + + + ++ YY + + +GLL G+KF + + +HD V+GH+LF+ LF+L+AL+ P+ +QTWLL+HNALS VV+DDIL+YA+ + + G +D L E +ELKK+V+ Q ++ + SGGG
Sbjct: 1217 VWWSEENSYYSKLPVSSKLLFIIKTLVYYCIADGIRRSDLFDVDTSLSKPFVSVSKVAIFLVVLFILSRIFVATERDMSYPIRRSLGAILSLGMAVSVVTVFIEDPNCIRYSLAAYYYIGSIALLGLLFGFKFVKHVYLVHDLVVGHILFLPLFVLAALQIPNYIQTWLLYHNALSGDVVVDDILRYAKKSMKSDGSGDDDLKEQVAELKKLVQRQ-------EEMLRSGGG 1441
BLAST of mRNA_Ecto-sp9_F_contig9083.17269.1 vs.
Match: 1,3-beta-glucan (synthase n=4 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FQP6_PHATC) HSP 1 Score: 127 bits (319), Expect = 1.190e-28 Identity = 112/346 (32.37%), Postives = 174/346 (50.29%), Query Frame = 1
Query: 1 VWWREENSYLSRFSLTQKMQGLVRPLIYVVIGYGVGGPQL----LGLDHKELKVVAKLAALALALMAASMLTQHYGNRLTPW-IRRSSTILITAFAVVYGIYLLLAHTKYTKVAVGLYYVAAAGSTVGLLMGYKFARFTWHIHDFVIGHLLFIILFLLSALKFPSLVQTWLLFHNALSEGVVIDDILKYARMNKEL-AGVD--EDSLEFSSELKKIVEAQAAELELLKQRIMSGGGGAFIGINGSPLQQXXXXXXXXXXXXVGAGEEEGMAGSVYSTGSGGYSYMMQPLGGD--GPDAAPTNRAEMMRPSNSTLDLADMANAKASTTEPPPSQAFQFSSPMSMPPR 1008
+W+ EENS+ + LT K+ L++ ++Y+VIG G+ L + L+ + V L LA+ ++ + + H R P+ +RR+ ILI + I L + T Y + + YY A GLL G++ ++ + +HD V HL+FI LF+L AL+ P ++QTWLL+HNALS VV+ DIL+YAR +E AG + ED +E SEL+K+V+ Q +Q + S G F G +G + + A ++ + + S GY + G D G A +AE +R ++ T D TT +Q F FS P +MPPR
Sbjct: 1800 MWYNEENSFWKQLPLTSKLLYLIKAVVYLVIGEGIRRSALFRSDITLNPPTIGVGKILIFLAVLIVVGRIFSAH--ERTMPYPVRRTIGILIFSGMFAGIITLFIEDTNYIRYGMAAYYGLGAVCLAGLLFGFRIVKYLYWLHDIVCAHLIFIPLFILGALQLPGMIQTWLLYHNALSTDVVVSDILRYARKTQESGAGGEKTEDLVEQISELRKVVQRQ-------EQALASAG---FTGGDGQLVSSASIGSAMSNNYLISAPDQPQIRQA--SDAGRGYGRALSLSGLDVWGNMALGDVQAEDLRQTDLTPDTIPQRGTPGQTTTV--AQGFSFSQPDTMPPR 2129
BLAST of mRNA_Ecto-sp9_F_contig9083.17269.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV62_9STRA) HSP 1 Score: 126 bits (317), Expect = 2.090e-28 Identity = 82/222 (36.94%), Postives = 132/222 (59.46%), Query Frame = 1
Query: 1 VWWREENSYLSRFSLTQKMQGLVRPLIYVVIGYGVGGPQLLGLDHKELKVVAKLAALALALMAASMLTQHYGNRLTPWIRRSSTILITAFAVVYGIYLLLAHTKYTKVAVGLYYVAAA-GSTVGLLMGYKFARFTWHIHDFVIGHLLFIILFLLSALKFPSLVQTWLLFHNALSEGVVIDDILKYARMNKELAGVDEDSLEFSSELKKIVEAQAAELELLKQ 663
VWW+EE Y + + TQ++ L + LI++ I YG+ P+ K++ VA+ ++ +A++ +L +R+ +RR I++ +V LL H Y K V +YY+ A T+ L +F + +HD +GH++FI LF+L+AL+ P+ VQTWLLFHNALS+GVV+DDILKYAR +KE GV+E L +E++K+++ Q ++ Q
Sbjct: 1369 VWWKEEMGYFKQVAPTQRLYILPKSLIWMGIAYGIVTPKFFTGGLKDVVNVAEGSSFFVAVILIYILVNKSASRMHSSLRRCLKIVLVLGFIVGVAVLLAKHPTYAKFLVAVYYLLAGICHTLCLFEIIAPTKFLFKVHDIFMGHVMFIGLFILAALQLPAKVQTWLLFHNALSQGVVVDDILKYARRSKE-EGVEEMDL---TEMRKVIQHQEHVIQTFMQ 1586
BLAST of mRNA_Ecto-sp9_F_contig9083.17269.1 vs.
Match: 1,3-beta-glucan (synthase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JIZ9_FISSO) HSP 1 Score: 124 bits (312), Expect = 9.810e-28 Identity = 80/222 (36.04%), Postives = 123/222 (55.41%), Query Frame = 1
Query: 1 VWWREENSYLSRFSLTQKMQGLVRPLIYVVIGYGVGGPQLLGLDHKELKVVAKLAALALALMAASMLTQHY--GNRLTPW-IRRSSTILITAFAVVYGIYLLLAHTKYTKVAVGLYYVAAAGSTVGLLMGYKFARFTWHIHDFVIGHLLFIILFLLSALKFPSLVQTWLLFHNALSEGVVIDDILKYARMNKELAGVDE---DSLEFSSELKKIVEAQAAEL 648
+WW EE ++ LT K+ V+ +Y+++ G+ L D K + + + + + A +L + + R P+ +RR+ I I + + L L + Y + A+ YY A +GLL G K + + +HD V GHL+FI LFLL+AL+ P L+QTWLL+HNALS VV+ DIL+YAR ++E G+ + D LE SELKK+V+ Q L
Sbjct: 1699 MWWNEETAFYKNIPLTSKLMFCVKSALYLLVAEGIRRSNLFRSDASLNKPIVAVGNVLIFIGALLVLERGFIASERSFPYPVRRTIGIAIFCGLIAGVVTLFLEDSNYVRYALSAYYALGALCQIGLLAGVKLVKHFYMLHDIVCGHLIFIPLFLLAALQLPRLLQTWLLYHNALSADVVVSDILRYARKSQESGGMTDAPDDLLEQISELKKLVQRQEQAL 1920
BLAST of mRNA_Ecto-sp9_F_contig9083.17269.1 vs.
Match: Uncharacterized (protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K6M3_FISSO) HSP 1 Score: 122 bits (305), Expect = 1.830e-27 Identity = 78/222 (35.14%), Postives = 122/222 (54.95%), Query Frame = 1
Query: 1 VWWREENSYLSRFSLTQKMQGLVRPLIYVVIGYGVGGPQLLGLDHKELKVVAKLAALALALMAASMLTQHY--GNRLTPW-IRRSSTILITAFAVVYGIYLLLAHTKYTKVAVGLYYVAAAGSTVGLLMGYKFARFTWHIHDFVIGHLLFIILFLLSALKFPSLVQTWLLFHNALSEGVVIDDILKYARMNKELAGVDE---DSLEFSSELKKIVEAQAAEL 648
+WW EE ++ T K+ V+ +Y+++ G+ L D K + + + + + A +L + + R P+ +RR+ I I + + L + + Y + A+ YY A +GLL G K + + +HD V GHL+FI LFLL+AL+ P L+QTWLL+HNALS VV+ DIL+YAR ++E G+ + D LE SELKK+V+ Q L
Sbjct: 168 MWWNEETAFYKSIPFTSKLMFCVKSALYLLVAEGIRRSNLFRSDASLNKPIVAVGNVLIFIGALLVLERGFIASERSFPYPVRRTIGIAIFCGLIAGVVTLFIEDSNYVRYALSAYYALGALCQIGLLAGVKLVKHFYMLHDIVCGHLIFIPLFLLAALQLPRLLQTWLLYHNALSADVVVSDILRYARKSQESGGMTDAPDDLLEQISELKKLVQRQEQAL 389
BLAST of mRNA_Ecto-sp9_F_contig9083.17269.1 vs.
Match: 1,3-beta-glucan (synthase n=4 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FM30_9STRA) HSP 1 Score: 119 bits (298), Expect = 6.760e-26 Identity = 79/231 (34.20%), Postives = 132/231 (57.14%), Query Frame = 1
Query: 1 VWWREENSYLSRFSLTQKMQGLVRPLIYVVIGYGVGGPQLLGLDHKELKVVAKLAALAL---ALMAASMLTQHYGNRLTPWIRRSSTILITAFAVVYGIYLLLAHTKYTKVAVGLYYVAAAGSTVGLLMGY-KFARFTWHIHDFVIGHLLFIILFLLSALKFPSLVQTWLLFHNALSEGVVIDDILKYARMNKELAGVDEDSLEFSSELKKIVEAQAAELELLKQRIMSGG 681
+WW +ENSY + + + K+ + + ++YVV+ G+ + D + K+ + L+ ML Y N L+ RR+ LIT ++ +L T + + + YY+ A +GLL G KF ++ + +HD ++GH++F +FLL+A++F S++QTW L+HNALS VV +DIL++AR N++ AG D + + +ELKKIV QA E L++ I +GG
Sbjct: 1791 MWWTDENSYYHKLNFSSKLFFVCKAMVYVVLAEGIYQSDIFEPDQNLVSPYFKMKYVLTFFGILVFFLMLYVVYANTLSYVTRRTLGNLITVSILLTIGTILKEDTNFIRYLISAYYLIGALCMIGLLFGAAKFVKYFYLVHDLIVGHIMFFFIFLLAAMQFVSVMQTWGLYHNALSSDVVANDILRHARKNQQSAGDDSEQI---TELKKIVRKQA---ETLQKIIQTGG 2015 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9083.17269.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig9083.17269.1 >prot_Ecto-sp9_F_contig9083.17269.1 ID=prot_Ecto-sp9_F_contig9083.17269.1|Name=mRNA_Ecto-sp9_F_contig9083.17269.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=337bp VWWREENSYLSRFSLTQKMQGLVRPLIYVVIGYGVGGPQLLGLDHKELKVback to top mRNA from alignment at Ecto-sp9_F_contig9083:656..5021- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig9083.17269.1 ID=mRNA_Ecto-sp9_F_contig9083.17269.1|Name=mRNA_Ecto-sp9_F_contig9083.17269.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4366bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9083:656..5021- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9083:656..5021- >mRNA_Ecto-sp9_F_contig9083.17269.1 ID=mRNA_Ecto-sp9_F_contig9083.17269.1|Name=mRNA_Ecto-sp9_F_contig9083.17269.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2022bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9083:656..5021- (Ectocarpus species9 EcSCA_722f female)back to top |