mRNA_Ecto-sp9_F_contig9071.17259.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9071.17259.1
Unique NamemRNA_Ecto-sp9_F_contig9071.17259.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9071.17259.1 vs.
Match: Subtilisin (n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBB4_9PHAE)

HSP 1 Score: 212 bits (540), Expect = 2.100e-61
Identity = 135/167 (80.84%), Postives = 139/167 (83.23%), Query Frame = -2 
Query:    2 FFGHDEEAFRLAVDWQHSRLLATTAAA----------GDSQGATGGAAAEGEKEAVGRRGETGTFVAFTSHARAARGREALSAALSPTSVLTAAHNREQGGCFIVRASAADVESLMXXXXXXXXXXXGPDGSRS-SRLFDGFVAVPPSLKLAPSLLDYGSDFDSYGS 469
            FFGHDEEAFRLAVDW HSRLLAT              GD+QGATG AAA+GE EAVGR G +GTFVAFTSHARAARGREALSA LSPTSVLTAAHNREQGGCFIVRAS ADVESL+XXXXXXXXXXX  DGS   SRLFDGFVAVPPSLKLAPSLLDYGSDF SY S
Sbjct:    7 FFGHDEEAFRLAVDWHHSRLLATXXXXXXXXXXXXXXGDNQGATG-AAAQGE-EAVGRSGGSGTFVAFTSHARAARGREALSAVLSPTSVLTAAHNREQGGCFIVRASTADVESLLXXXXXXXXXXXXXDGSSGGSRLFDGFVAVPPSLKLAPSLLDYGSDFSSYDS 171
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BLAST of mRNA_Ecto-sp9_F_contig9071.17259.1 vs.
Match: Subtilisin (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK25_ECTSI)

HSP 1 Score: 213 bits (542), Expect = 4.180e-61
Identity = 133/162 (82.10%), Postives = 134/162 (82.72%), Query Frame = -2 
Query:    5 FFGHDEEAFRLAVDWQHSRLLATTAAAGDSQGATGGAA------AEGEKEAVGRRGETGTFVAFTSHARAARGREALSAALSPTSVLTAAHNREQGGCFIVRASAADVESLMXXXXXXXXXXXGPDGSRS-SRLFDGFVAVPPSLKLAPSLLDYGSDFDSYG 469
            FFGHDEEAFRLAVDWQHSRLLAT                     AEGEKEAV RRG TGTFVAFTSHAR ARGREALSAALSPTSVLTAAHNREQGGCFIVRASAADVESLMXXXXXXXXXX GPDG  S SRLFDGFVAVPPSLKLAPSLLDYGSDFD+YG
Sbjct:    7 FFGHDEEAFRLAVDWQHSRLLATAXXXXXXXXXXXXXXXXXXXXAEGEKEAVARRGGTGTFVAFTSHARGARGREALSAALSPTSVLTAAHNREQGGCFIVRASAADVESLMXXXXXXXXXX-GPDGGISGSRLFDGFVAVPPSLKLAPSLLDYGSDFDAYG 167
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9071.17259.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Subtilisin2.100e-6180.84n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 R... [more]
Subtilisin4.180e-6182.10n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9071contigEcto-sp9_F_contig9071:4174..4643 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-06_007920.1
Exons1
Model size470
Cds size192
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9071.17259.1prot_Ecto-sp9_F_contig9071.17259.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9071 4362..4553 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930974.9809504-UTR-Ecto-sp9_F_contig9071:4173..43611622930974.9809504-UTR-Ecto-sp9_F_contig9071:4173..4361Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9071 4174..4361 +
1692278975.4317377-UTR-Ecto-sp9_F_contig9071:4173..43611692278975.4317377-UTR-Ecto-sp9_F_contig9071:4173..4361Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9071 4174..4361 +
1622930975.0263333-UTR-Ecto-sp9_F_contig9071:4553..46431622930975.0263333-UTR-Ecto-sp9_F_contig9071:4553..4643Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9071 4554..4643 +
1692278975.4542184-UTR-Ecto-sp9_F_contig9071:4553..46431692278975.4542184-UTR-Ecto-sp9_F_contig9071:4553..4643Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9071 4554..4643 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930975.0121107-CDS-Ecto-sp9_F_contig9071:4361..45531622930975.0121107-CDS-Ecto-sp9_F_contig9071:4361..4553Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9071 4362..4553 +
1692278975.4417086-CDS-Ecto-sp9_F_contig9071:4361..45531692278975.4417086-CDS-Ecto-sp9_F_contig9071:4361..4553Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9071 4362..4553 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9071.17259.1

>prot_Ecto-sp9_F_contig9071.17259.1 ID=prot_Ecto-sp9_F_contig9071.17259.1|Name=mRNA_Ecto-sp9_F_contig9071.17259.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=64bp
MKHPPCSRLWAAVSTDVGDRAADSASRPLAARAWLVNATNVPVSPLRPTA
SFSPSAAAPPVAP*
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mRNA from alignment at Ecto-sp9_F_contig9071:4174..4643+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9071.17259.1 ID=mRNA_Ecto-sp9_F_contig9071.17259.1|Name=mRNA_Ecto-sp9_F_contig9071.17259.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=470bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9071:4174..4643+ (Ectocarpus species9 EcSCA_722f female)
CCGAACCGTAAGAATCAAAATCGCTGCCGTAGTCCAACAGGGACGGCGCT
AGCTTAAGGCTGGGGGGGACGGCCACGAACCCGTCGAAGAGGCGGCTACT
TCTACTACCATCGGGGCCTCCTGACTCCTCCTCCTCCTCCTCGAGCAGCA
ACATCAGGGACTCCACATCGGCCGCGCTCGCCCGCACTATGAAGCACCCG
CCCTGCTCCCGGTTGTGGGCCGCCGTCAGCACCGACGTCGGGGACAGGGC
CGCCGATAGCGCCTCGCGGCCCCTGGCGGCGCGGGCGTGGCTCGTGAACG
CGACAAACGTTCCCGTTTCTCCCCTACGTCCTACCGCTTCTTTTTCTCCT
TCAGCTGCTGCTCCTCCTGTTGCCCCTTGACTATCCCCTGCTGCTGCTGT
TGTTGCGAGGAGGCGTGAGTGTTGCCAATCCACCGCCAATCGAAACGCTT
CTTCATCGTGCCCGAAGAAA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9071:4174..4643+

>mRNA_Ecto-sp9_F_contig9071.17259.1 ID=mRNA_Ecto-sp9_F_contig9071.17259.1|Name=mRNA_Ecto-sp9_F_contig9071.17259.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=384bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9071:4174..4643+ (Ectocarpus species9 EcSCA_722f female)
ATGAAGCACCCGCCCTGCTCCCGGTTGTGGGCCGCCGTCAGCACCGACGT
CGGGGACAGGGCCGCCGATAGCGCCTCGCGGCCCCTGGCGGCGCGGGCGT
GGCTCGTGAACGCGACAAACGTTCCCGTTTCTCCCCTACGTCCTACCGCT
TCTTTTTCTCCTTCAGCTGCTGCTCCTCCTGTTGCCCCTTGAATGAAGCA
CCCGCCCTGCTCCCGGTTGTGGGCCGCCGTCAGCACCGACGTCGGGGACA
GGGCCGCCGATAGCGCCTCGCGGCCCCTGGCGGCGCGGGCGTGGCTCGTG
AACGCGACAAACGTTCCCGTTTCTCCCCTACGTCCTACCGCTTCTTTTTC
TCCTTCAGCTGCTGCTCCTCCTGTTGCCCCTTGA
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