mRNA_Ecto-sp9_F_contig9066.17254.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9066.17254.1
Unique NamemRNA_Ecto-sp9_F_contig9066.17254.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9066.17254.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR82_9PHAE)

HSP 1 Score: 263 bits (672), Expect = 1.080e-77
Identity = 184/205 (89.76%), Postives = 187/205 (91.22%), Query Frame = 1 
Query:    7 PGGADGGVLCGVPLLPKQHSRSMSDTPQAGVNGGCGSKDGQAQGLHQPGRPTVAEERLRRRRLEGLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRAEGAETVGEAARTRGCRRSSSGGTLSALLGYPDPLTPPNGDRARGLAAGSIGRPASLDHGGLSVSTGGXXXXXGLVLSPASSAHSNNGFASSPASS 621
            PGGADGGVL GVPLLPKQHS+SMSDTPQAGVNGGCGSKDGQAQGLHQPGRPTVAEERLRRRRLEGLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      GRAEGA TVGEAARTRGCRRSSSGGTLSALLG+ DPLT PNGDRARGLAAGS+GRPASL HG L VSTGG     GLVLSPASSAHSNNGFASSPASS
Sbjct:  786 PGGADGGVLSGVPLLPKQHSQSMSDTPQAGVNGGCGSKDGQAQGLHQPGRPTVAEERLRRRRLEGLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATASSGGRAEGARTVGEAARTRGCRRSSSGGTLSALLGHLDPLTLPNGDRARGLAAGSMGRPASLGHGSLGVSTGGD----GLVLSPASSAHSNNGFASSPASS 986
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9066.17254.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.080e-7789.76protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9066contigEcto-sp9_F_contig9066:3380..4002 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size625
Cds size621
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930973.5569177-CDS-Ecto-sp9_F_contig9066:3379..40001622930973.5569177-CDS-Ecto-sp9_F_contig9066:3379..4000Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9066 3380..4000 +
1692278974.6942363-CDS-Ecto-sp9_F_contig9066:3379..40001692278974.6942363-CDS-Ecto-sp9_F_contig9066:3379..4000Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9066 3380..4000 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9066.17254.1prot_Ecto-sp9_F_contig9066.17254.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9066 3380..4000 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9066.17254.1

>prot_Ecto-sp9_F_contig9066.17254.1 ID=prot_Ecto-sp9_F_contig9066.17254.1|Name=mRNA_Ecto-sp9_F_contig9066.17254.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=207bp
QVPGGADGGVLCGVPLLPKQHSRSMSDTPQAGVNGGCGSKDGQAQGLHQP
GRPTVAEERLRRRRLEGLEQQQQLQQHREQEKLLRQFFAMGGGGDWDEEK
AARATSSSGGRAEGAETVGEAARTRGCRRSSSGGTLSALLGYPDPLTPPN
GDRARGLAAGSIGRPASLDHGGLSVSTGGGGGSGGLVLSPASSAHSNNGF
ASSPASS
back to top

mRNA from alignment at Ecto-sp9_F_contig9066:3380..4002+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9066.17254.1 ID=mRNA_Ecto-sp9_F_contig9066.17254.1|Name=mRNA_Ecto-sp9_F_contig9066.17254.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=623bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9066:3380..4002+ (Ectocarpus species9 EcSCA_722f female)
CAAGTGCCAGGCGGGGCAGATGGCGGGGTGCTATGCGGGGTCCCGTTGTT
ACCGAAGCAGCATTCGCGATCGATGTCGGACACTCCGCAAGCCGGCGTGA
ACGGCGGTTGCGGCTCGAAGGACGGGCAGGCGCAAGGGCTCCACCAGCCC
GGCCGGCCTACGGTGGCCGAGGAGAGGCTGCGGCGGCGGCGCCTGGAGGG
CCTGGAGCAGCAGCAGCAGCTGCAGCAGCACCGGGAGCAGGAGAAGCTGC
TGCGGCAGTTCTTCGCGATGGGCGGCGGGGGCGACTGGGACGAGGAGAAG
GCGGCGAGAGCTACCTCGTCGAGCGGCGGCCGCGCGGAAGGGGCGGAGAC
CGTGGGCGAGGCGGCCCGCACGAGGGGGTGTCGCCGCTCCTCCAGCGGGG
GCACCCTGTCGGCCTTGTTGGGGTACCCCGACCCACTCACCCCGCCCAAT
GGCGATCGCGCGAGGGGTCTCGCAGCGGGCAGTATCGGCAGGCCGGCGTC
GTTGGACCACGGCGGTCTCAGCGTTAGCACCGGCGGCGGCGGCGGCAGCG
GCGGGCTGGTGCTCTCCCCCGCGTCGTCGGCGCACAGCAACAACGGCTTC
GCGAGCTCCCCGGCCTCCTCCTC
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9066:3380..4002+

>mRNA_Ecto-sp9_F_contig9066.17254.1 ID=mRNA_Ecto-sp9_F_contig9066.17254.1|Name=mRNA_Ecto-sp9_F_contig9066.17254.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1242bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9066:3380..4002+ (Ectocarpus species9 EcSCA_722f female)
CAAGTGCCAGGCGGGGCAGATGGCGGGGTGCTATGCGGGGTCCCGTTGTT
ACCGAAGCAGCATTCGCGATCGATGTCGGACACTCCGCAAGCCGGCGTGA
ACGGCGGTTGCGGCTCGAAGGACGGGCAGGCGCAAGGGCTCCACCAGCCC
GGCCGGCCTACGGTGGCCGAGGAGAGGCTGCGGCGGCGGCGCCTGGAGGG
CCTGGAGCAGCAGCAGCAGCTGCAGCAGCACCGGGAGCAGGAGAAGCTGC
TGCGGCAGTTCTTCGCGATGGGCGGCGGGGGCGACTGGGACGAGGAGAAG
GCGGCGAGAGCTACCTCGTCGAGCGGCGGCCGCGCGGAAGGGGCGGAGAC
CGTGGGCGAGGCGGCCCGCACGAGGGGGTGTCGCCGCTCCTCCAGCGGGG
GCACCCTGTCGGCCTTGTTGGGGTACCCCGACCCACTCACCCCGCCCAAT
GGCGATCGCGCGAGGGGTCTCGCAGCGGGCAGTATCGGCAGGCCGGCGTC
GTTGGACCACGGCGGTCTCAGCGTTAGCACCGGCGGCGGCGGCGGCAGCG
GCGGGCTGGTGCTCTCCCCCGCGTCGTCGGCGCACAGCAACAACGGCTTC
GCGAGCTCCCCGGCCTCCTCCCAAGTGCCAGGCGGGGCAGATGGCGGGGT
GCTATGCGGGGTCCCGTTGTTACCGAAGCAGCATTCGCGATCGATGTCGG
ACACTCCGCAAGCCGGCGTGAACGGCGGTTGCGGCTCGAAGGACGGGCAG
GCGCAAGGGCTCCACCAGCCCGGCCGGCCTACGGTGGCCGAGGAGAGGCT
GCGGCGGCGGCGCCTGGAGGGCCTGGAGCAGCAGCAGCAGCTGCAGCAGC
ACCGGGAGCAGGAGAAGCTGCTGCGGCAGTTCTTCGCGATGGGCGGCGGG
GGCGACTGGGACGAGGAGAAGGCGGCGAGAGCTACCTCGTCGAGCGGCGG
CCGCGCGGAAGGGGCGGAGACCGTGGGCGAGGCGGCCCGCACGAGGGGGT
GTCGCCGCTCCTCCAGCGGGGGCACCCTGTCGGCCTTGTTGGGGTACCCC
GACCCACTCACCCCGCCCAATGGCGATCGCGCGAGGGGTCTCGCAGCGGG
CAGTATCGGCAGGCCGGCGTCGTTGGACCACGGCGGTCTCAGCGTTAGCA
CCGGCGGCGGCGGCGGCAGCGGCGGGCTGGTGCTCTCCCCCGCGTCGTCG
GCGCACAGCAACAACGGCTTCGCGAGCTCCCCGGCCTCCTCC
back to top