mRNA_Ecto-sp9_F_contig9064.17251.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9064.17251.1
Unique NamemRNA_Ecto-sp9_F_contig9064.17251.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9064.17251.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLF8_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 3.930e-27
Identity = 57/72 (79.17%), Postives = 57/72 (79.17%), Query Frame = 1 
Query:    1 TTPLHAACFRGQQAIVAQLLSRGATPDAADENGLRPLHVACASPDSEPMVRSLLKGKADANVKDNFDCSPIY 216
            TTPLHAACFRGQQAIVAQLLSRGA PDAA            ASPDSEPMVR LLKGKADANVKDNF CSPIY
Sbjct:  295 TTPLHAACFRGQQAIVAQLLSRGANPDAAXXXXXXXXXXXXASPDSEPMVRFLLKGKADANVKDNFGCSPIY 366
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BLAST of mRNA_Ecto-sp9_F_contig9064.17251.1 vs.
Match: Ankyrin (repeat domain 44 n=1 Tax=Neolamprologus brichardi TaxID=32507 RepID=A0A3Q4HBN0_NEOBR)

HSP 1 Score: 59.7 bits (143), Expect = 1.330e-8
Identity = 29/71 (40.85%), Postives = 39/71 (54.93%), Query Frame = 1 
Query:    4 TPLHAACFRGQQAIVAQLLSRGATPDAADENGLRPLHVACASPDSEPMVRSLLKGKADANVKDNFDCSPIY 216
            TPLH ACF GQ A+V++L+  GA    A+  G  PLH A AS      +  L+   AD NV+     SP++
Sbjct:   24 TPLHVACFNGQDAVVSELIDYGANVSQANNKGFTPLHFAAASTHGALCLEFLVNNGADVNVQSRDGKSPLH 94
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BLAST of mRNA_Ecto-sp9_F_contig9064.17251.1 vs.
Match: Ankyrin (repeat domain-containing protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A4Q3VZX3_9BACT)

HSP 1 Score: 51.2 bits (121), Expect = 1.230e-5
Identity = 30/65 (46.15%), Postives = 38/65 (58.46%), Query Frame = 1 
Query:    4 TPLHAACFRGQQAIVAQLLSRGATPDAADENGLRPLHVACASPDSEPMVRSLLKGKADANVKDNF 198
            T LH A  RG   +  +LL RGA  D + E G+ PL +A    D EPMV+ LLK KAD + K+ F
Sbjct:  227 TLLHLAVSRGHVKVAEELLRRGANVDISAEGGITPLMIAVKGQD-EPMVKLLLKYKADRSKKNVF 290
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BLAST of mRNA_Ecto-sp9_F_contig9064.17251.1 vs.
Match: Ankyrin (repeat domain 28 n=2 Tax=Percomorphaceae TaxID=1489872 RepID=A0A3Q3JMF0_MONAL)

HSP 1 Score: 50.4 bits (119), Expect = 2.520e-5
Identity = 23/71 (32.39%), Postives = 36/71 (50.70%), Query Frame = 1 
Query:    4 TPLHAACFRGQQAIVAQLLSRGATPDAADENGLRPLHVACASPDSEPMVRSLLKGKADANVKDNFDCSPIY 216
            TPLH AC+ GQ  +V +L+  G   +  +E G  PLH   AS      +  L+   AD N++     +P++
Sbjct:  226 TPLHVACYNGQDVVVNELIECGTNVNQVNEKGFAPLHFTAASRHGALCLELLVCNGADVNIRSKDGKTPLH 296
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BLAST of mRNA_Ecto-sp9_F_contig9064.17251.1 vs.
Match: Uncharacterized (protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5IAH4_9HYME)

HSP 1 Score: 50.1 bits (118), Expect = 3.280e-5
Identity = 27/82 (32.93%), Postives = 42/82 (51.22%), Query Frame = 1 
Query:    4 TPLHAACFRGQQAIVAQLLSRGATPDAADENGLRPLHVACASPDSEPMVRSLLKGKAD-------ANVKDNFDCSPIYCEWN 228
            TPLH +   G   ++  LL+RGA P+ A+ENG   LH+AC     +  +  +L   AD        + +D  DC+P++   N
Sbjct:  230 TPLHVSIRNGNINLMKFLLTRGANPNLANENGFTTLHIACQRKYDDVDLLKMLFEAADKFNKPLQVDARDKSDCTPLHLALN 311
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BLAST of mRNA_Ecto-sp9_F_contig9064.17251.1 vs.
Match: ASB10 (protein (Fragment) n=1 Tax=Crotophaga sulcirostris TaxID=33598 RepID=A0A7K5I4T0_CROSL)

HSP 1 Score: 50.1 bits (118), Expect = 3.320e-5
Identity = 28/62 (45.16%), Postives = 36/62 (58.06%), Query Frame = 1 
Query:    4 TPLHAACFRGQQAIVAQLLSRGATPDAADENGLRPLHVACASPDSEPMVRSLLKGKADANVK 189
            T LH AC   +      LL  GA P+AA E+G RPLH+ C SPDS   V+ LL+  A+ N +
Sbjct:  147 TALHEACAAARAPCTRLLLRCGANPEAASEDGYRPLHL-CKSPDSIECVQQLLQHGANVNSR 207
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BLAST of mRNA_Ecto-sp9_F_contig9064.17251.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DMW8_HEMAN)

HSP 1 Score: 50.1 bits (118), Expect = 3.420e-5
Identity = 29/71 (40.85%), Postives = 41/71 (57.75%), Query Frame = 1 
Query:   10 LHAACFRGQQAIVAQLLSRGATPDAAD-ENGLRPLHVACASPDS--EPMVRSLLKGKADANVKDNFDCSPI 213
            +H A   G  AI+ QLL  GA  +  D + G  PLH AC +P +  + MV+ LL G ADA +KD+   +P+
Sbjct:  483 IHEAASAGNVAILTQLLKHGADCNLRDSKRGQTPLHRACTAPVNVAKEMVKCLLDGGADAQIKDSKQLTPV 553
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BLAST of mRNA_Ecto-sp9_F_contig9064.17251.1 vs.
Match: Hypothetical (protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0U5D4_HEMAN)

HSP 1 Score: 50.1 bits (118), Expect = 3.510e-5
Identity = 29/71 (40.85%), Postives = 41/71 (57.75%), Query Frame = 1 
Query:   10 LHAACFRGQQAIVAQLLSRGATPDAAD-ENGLRPLHVACASPDS--EPMVRSLLKGKADANVKDNFDCSPI 213
            +H A   G  AI+ QLL  GA  +  D + G  PLH AC +P +  + MV+ LL G ADA +KD+   +P+
Sbjct:  395 IHEAASAGNVAILTQLLKHGADCNLRDSKRGQTPLHRACTAPVNVAKEMVKCLLDGGADAQIKDSKQLTPV 465
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9064.17251.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
Uncharacterized3.930e-2779.17protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Ankyrin1.330e-840.85repeat domain 44 n=1 Tax=Neolamprologus brichardi ... [more]
Ankyrin1.230e-546.15repeat domain-containing protein n=1 Tax=bacterium... [more]
Ankyrin2.520e-532.39repeat domain 28 n=2 Tax=Percomorphaceae TaxID=148... [more]
Uncharacterized3.280e-532.93protein n=1 Tax=Trichogramma brassicae TaxID=86971... [more]
ASB103.320e-545.16protein (Fragment) n=1 Tax=Crotophaga sulcirostris... [more]
Hypothetical3.420e-540.85protein (Fragment) n=1 Tax=Hemiselmis andersenii T... [more]
Hypothetical3.510e-540.85protein (Fragment) n=2 Tax=Hemiselmis andersenii T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9064contigEcto-sp9_F_contig9064:5193..5429 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score60.5
Seed ortholog evalue4.2e-07
Seed eggNOG ortholog69319.XP_008551403.1
Preferred nameRel
KEGG koko:K02580,ko:K04469
KEGG Pathwayko01523,ko04010,ko04014,ko04024,ko04062,ko04064,ko04066,ko04071,ko04151,ko04210,ko04211,ko04218,ko04380,ko04620,ko04621,ko04622,ko04623,ko04624,ko04657,ko04658,ko04659,ko04660,ko04662,ko04668,ko04722,ko04917,ko04920,ko04926,ko04931,ko04932,ko04933,ko05030,ko05120,ko05131,ko05132,ko05133,ko05134,ko05140,ko05142,ko05145,ko05146,ko05152,ko05160,ko05161,ko05162,ko05164,ko05165,ko05166,ko05167,ko05168,ko05169,ko05200,ko05202,ko05203,ko05206,ko05212,ko05215,ko05220,ko05221,ko05222,ko05224,ko05321,ko05418,map01523,map04010,map04014,map04024,map04062,map04064,map04066,map04071,map04151,map04210,map04211,map04218,map04380,map04620,map04621,map04622,map04623,map04624,map04657,map04658,map04659,map04660,map04662,map04668,map04722,map04917,map04920,map04926,map04931,map04932,map04933,map05030,map05120,map05131,map05132,map05133,map05134,map05140,map05142,map05145,map05146,map05152,map05160,map05161,map05162,map05164,map05165,map05166,map05167,map05168,map05169,map05200,map05202,map05203,map05206,map05212,map05215,map05220,map05221,map05222,map05224,map05321,map05418
KEGG ModuleM00686
GOsGO:0000122,GO:0000228,GO:0000785,GO:0000790,GO:0000791,GO:0000902,GO:0000904,GO:0000976,GO:0000977,GO:0000981,GO:0000982,GO:0001012,GO:0001067,GO:0001077,GO:0001228,GO:0001505,GO:0002225,GO:0002230,GO:0002252,GO:0002376,GO:0002682,GO:0002684,GO:0002697,GO:0002699,GO:0002700,GO:0002702,GO:0002759,GO:0002760,GO:0002784,GO:0002786,GO:0002788,GO:0002803,GO:0002804,GO:0002805,GO:0002807,GO:0002808,GO:0002810,GO:0002813,GO:0002831,GO:0002833,GO:0002920,GO:0002922,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003690,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005719,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0006963,GO:0006964,GO:0006967,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007249,GO:0007275,GO:0007399,GO:0007422,GO:0008063,GO:0008150,GO:0008152,GO:0008285,GO:0009058,GO:0009059,GO:0009267,GO:0009605,GO:0009607,GO:0009615,GO:0009617,GO:0009653,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016043,GO:0016070,GO:0016358,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022008,GO:0023052,GO:0030030,GO:0030154,GO:0030182,GO:0031175,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031347,GO:0031349,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032101,GO:0032103,GO:0032501,GO:0032502,GO:0032774,GO:0032989,GO:0032990,GO:0032991,GO:0033256,GO:0033554,GO:0034097,GO:0034198,GO:0034248,GO:0034250,GO:0034641,GO:0034645,GO:0034654,GO:0035556,GO:0038061,GO:0042127,GO:0042221,GO:0042594,GO:0042742,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043900,GO:0043902,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045087,GO:0045088,GO:0045089,GO:0045428,GO:0045429,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048813,GO:0048856,GO:0048858,GO:0048869,GO:0048934,GO:0048935,GO:0050688,GO:0050691,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050829,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051607,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0061057,GO:0065007,GO:0065008,GO:0070013,GO:0071496,GO:0071704,GO:0071840,GO:0072091,GO:0080090,GO:0080134,GO:0090304,GO:0097159,GO:0097659,GO:0098542,GO:0120036,GO:0120039,GO:0140110,GO:1900150,GO:1900424,GO:1900426,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902679,GO:1902680,GO:1903426,GO:1903428,GO:1903506,GO:1903507,GO:1903508,GO:1904407,GO:1990837,GO:1990928,GO:2000112,GO:2000113,GO:2000377,GO:2000379,GO:2000647,GO:2001141
EggNOG free text desc.Rel homology DNA-binding domain
EggNOG OGs38EM0@33154,3BACK@33208,3CUN1@33213,3SG6S@50557,41X4P@6656,46DWB@7399,COG0666@1,KOG0504@2759
COG Functional cat.K
Best tax levelHymenoptera
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03000
Hectar predicted targeting categoryother localisation
Exons1
Model size237
Cds size237
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930973.2898207-CDS-Ecto-sp9_F_contig9064:5192..54291622930973.2898207-CDS-Ecto-sp9_F_contig9064:5192..5429Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9064 5193..5429 -
1692278974.5817153-CDS-Ecto-sp9_F_contig9064:5192..54291692278974.5817153-CDS-Ecto-sp9_F_contig9064:5192..5429Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9064 5193..5429 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9064.17251.1prot_Ecto-sp9_F_contig9064.17251.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9064 5193..5429 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9064.17251.1

>prot_Ecto-sp9_F_contig9064.17251.1 ID=prot_Ecto-sp9_F_contig9064.17251.1|Name=mRNA_Ecto-sp9_F_contig9064.17251.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=79bp
TTPLHAACFRGQQAIVAQLLSRGATPDAADENGLRPLHVACASPDSEPMV
RSLLKGKADANVKDNFDCSPIYCEWNYE*
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mRNA from alignment at Ecto-sp9_F_contig9064:5193..5429-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9064.17251.1 ID=mRNA_Ecto-sp9_F_contig9064.17251.1|Name=mRNA_Ecto-sp9_F_contig9064.17251.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=237bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9064:5193..5429- (Ectocarpus species9 EcSCA_722f female)
ACGACGCCGCTCCACGCGGCCTGCTTCCGCGGGCAGCAGGCCATAGTGGC
GCAGCTCCTGTCGAGGGGCGCGACCCCCGACGCTGCCGACGAGAACGGAC
TCCGACCGCTCCACGTGGCCTGCGCGTCCCCCGACAGCGAGCCGATGGTC
CGGTCCCTGCTCAAGGGGAAGGCGGACGCGAACGTGAAGGACAACTTCGA
CTGCTCCCCGATATACTGTGAGTGGAACTATGAATAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9064:5193..5429-

>mRNA_Ecto-sp9_F_contig9064.17251.1 ID=mRNA_Ecto-sp9_F_contig9064.17251.1|Name=mRNA_Ecto-sp9_F_contig9064.17251.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=474bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9064:5193..5429- (Ectocarpus species9 EcSCA_722f female)
ACGACGCCGCTCCACGCGGCCTGCTTCCGCGGGCAGCAGGCCATAGTGGC
GCAGCTCCTGTCGAGGGGCGCGACCCCCGACGCTGCCGACGAGAACGGAC
TCCGACCGCTCCACGTGGCCTGCGCGTCCCCCGACAGCGAGCCGATGGTC
CGGTCCCTGCTCAAGGGGAAGGCGGACGCGAACGTGAAGGACAACTTCGA
CTGCTCCCCGATATACTGTGAGTGGAACTATGAATAGACGACGCCGCTCC
ACGCGGCCTGCTTCCGCGGGCAGCAGGCCATAGTGGCGCAGCTCCTGTCG
AGGGGCGCGACCCCCGACGCTGCCGACGAGAACGGACTCCGACCGCTCCA
CGTGGCCTGCGCGTCCCCCGACAGCGAGCCGATGGTCCGGTCCCTGCTCA
AGGGGAAGGCGGACGCGAACGTGAAGGACAACTTCGACTGCTCCCCGATA
TACTGTGAGTGGAACTATGAATAG
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