mRNA_Ecto-sp9_F_contig9064.17250.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9064.17250.1
Unique NamemRNA_Ecto-sp9_F_contig9064.17250.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9064.17250.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLF8_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 1.870e-31
Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = -1 
Query:    7 SDIDSSVGGRGSVRPSFGLGREDLPGESSEEEDDIGADEDDAFVLPSMLTLENDLIREGSFFASAGGK 210
            SDIDS VGG GSVRPSFGLGREDLPGESSEEED+IGADEDDAFVLPSMLTLENDLIREGSFFASAGGK
Sbjct:  544 SDIDSGVGGGGSVRPSFGLGREDLPGESSEEEDNIGADEDDAFVLPSMLTLENDLIREGSFFASAGGK 611
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BLAST of mRNA_Ecto-sp9_F_contig9064.17250.1 vs.
Match: Ankyrin ((Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJE6_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 1.450e-23
Identity = 77/93 (82.80%), Postives = 78/93 (83.87%), Query Frame = -1 
Query:   88 WGAGDAGCASPSKTMASSASTSTGWTSGAESSSCRDGXXXXXXXXXXXXXXASDIDSSVGGRGSVRPSFGLGREDLPGESSEEEDDIGADEDD 366
            WGAGDAGCASPSKTMASSA   TGWT           XXXXXXXXXXXXXXASDIDSSVGGRGSVRPSFGLGREDLP ESSEEEDDIGAD+DD
Sbjct:  453 WGAGDAGCASPSKTMASSAXXXTGWTXXXXXXXXXX-XXXXXXXXXXXXXXASDIDSSVGGRGSVRPSFGLGREDLPSESSEEEDDIGADKDD 544
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9064.17250.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.870e-3195.59protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Ankyrin1.450e-2382.80(Partial) (Fragment) n=1 Tax=Ectocarpus siliculosu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9064contigEcto-sp9_F_contig9064:3645..4027 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size383
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930973.2460852-CDS-Ecto-sp9_F_contig9064:3644..40251622930973.2460852-CDS-Ecto-sp9_F_contig9064:3644..4025Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9064 3645..4025 +
1692278974.569743-CDS-Ecto-sp9_F_contig9064:3644..40251692278974.569743-CDS-Ecto-sp9_F_contig9064:3644..4025Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9064 3645..4025 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9064.17250.1prot_Ecto-sp9_F_contig9064.17250.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9064 3645..4025 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9064.17250.1

>prot_Ecto-sp9_F_contig9064.17250.1 ID=prot_Ecto-sp9_F_contig9064.17250.1|Name=mRNA_Ecto-sp9_F_contig9064.17250.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=127bp
PALPSSAREERPLPNEVVLEGEHRRQHEGIVLVGADVVLFLAALAREVLS
PKPEARAHAPPPANAAVDVARRAAALVTPAVPAAAAIPARRRLRPARPPG
ARGRRGGHSLRRGRAPGVPCPPRRRSL
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mRNA from alignment at Ecto-sp9_F_contig9064:3645..4027+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9064.17250.1 ID=mRNA_Ecto-sp9_F_contig9064.17250.1|Name=mRNA_Ecto-sp9_F_contig9064.17250.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=383bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9064:3645..4027+ (Ectocarpus species9 EcSCA_722f female)
CCCGCCCTTCCCTCCAGCGCTCGCGAAGAAAGACCCCTCCCGAATGAGGT
CGTTCTCGAGGGTGAGCATCGACGGCAGCACGAAGGCATCGTCCTCGTCG
GCGCCGATGTCGTCCTCTTCCTCGCTGCTCTCGCCCGGGAGGTCCTCTCG
CCCAAGCCCGAAGCTCGGGCGCACGCTCCCCCTCCCGCCAACGCTGCTGT
CGATGTCGCTCGCCGCGCTGCTGCTCTGGTAACCCCCGCCGTACCCGCCG
CCGCCGCCATCCCTGCACGAAGAAGACTCCGCCCCGCTCGTCCACCCGGT
GCTCGTGGACGCCGAGGAGGCCATAGTCTTCGACGGGGACGCGCACCCGG
CGTCCCCTGCCCCCCACGCCGCCGCAGCCTCTC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9064:3645..4027+

>mRNA_Ecto-sp9_F_contig9064.17250.1 ID=mRNA_Ecto-sp9_F_contig9064.17250.1|Name=mRNA_Ecto-sp9_F_contig9064.17250.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=762bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9064:3645..4027+ (Ectocarpus species9 EcSCA_722f female)
CCCGCCCTTCCCTCCAGCGCTCGCGAAGAAAGACCCCTCCCGAATGAGGT
CGTTCTCGAGGGTGAGCATCGACGGCAGCACGAAGGCATCGTCCTCGTCG
GCGCCGATGTCGTCCTCTTCCTCGCTGCTCTCGCCCGGGAGGTCCTCTCG
CCCAAGCCCGAAGCTCGGGCGCACGCTCCCCCTCCCGCCAACGCTGCTGT
CGATGTCGCTCGCCGCGCTGCTGCTCTGGTAACCCCCGCCGTACCCGCCG
CCGCCGCCATCCCTGCACGAAGAAGACTCCGCCCCGCTCGTCCACCCGGT
GCTCGTGGACGCCGAGGAGGCCATAGTCTTCGACGGGGACGCGCACCCGG
CGTCCCCTGCCCCCCACGCCGCCGCAGCCTCCCCGCCCTTCCCTCCAGCG
CTCGCGAAGAAAGACCCCTCCCGAATGAGGTCGTTCTCGAGGGTGAGCAT
CGACGGCAGCACGAAGGCATCGTCCTCGTCGGCGCCGATGTCGTCCTCTT
CCTCGCTGCTCTCGCCCGGGAGGTCCTCTCGCCCAAGCCCGAAGCTCGGG
CGCACGCTCCCCCTCCCGCCAACGCTGCTGTCGATGTCGCTCGCCGCGCT
GCTGCTCTGGTAACCCCCGCCGTACCCGCCGCCGCCGCCATCCCTGCACG
AAGAAGACTCCGCCCCGCTCGTCCACCCGGTGCTCGTGGACGCCGAGGAG
GCCATAGTCTTCGACGGGGACGCGCACCCGGCGTCCCCTGCCCCCCACGC
CGCCGCAGCCTC
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