mRNA_Ecto-sp9_F_contig9063.17249.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9063.17249.1
Unique NamemRNA_Ecto-sp9_F_contig9063.17249.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9063.17249.1 vs.
Match: Btz (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS31_ECTSI)

HSP 1 Score: 240 bits (613), Expect = 2.380e-75
Identity = 236/260 (90.77%), Postives = 236/260 (90.77%), Query Frame = 1 
Query:    1 MSEDEGSSEEEDXXXXXXXXXXXXXSEAAGAAPSDTEEEGDGAPAAAALAQAGSTAAGTEIGDEKGATPVGREEGEAEGNSDPEATAAGTGWGEPEETGSVAGEDQEGDEAEGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMAEYAAAKAEEDAIKQERRAIRENPAVIPKLGAFFVHDDRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--EGVGRWRADALPSPKKNKSGGVER 774
            MSEDEGSSEEEDXXXXXXXXXXXXXSEAAGAAPSDTEEEGDGAPAAAALAQAGSTAAGTEIGDEKGATPVG EEG      DPEATAA TGWGEPEETGSVAGEDQEGDEAEGS           XXXXXXXXXXXXXXXXXXXXXXXXXXXXX  MAEYAAAKAEEDAIKQERRAIRENPAVIPKLGAFFVHDDRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  EGVGRWRADALPSPKKNK GGVER
Sbjct:    1 MSEDEGSSEEEDXXXXXXXXXXXXXSEAAGAAPSDTEEEGDGAPAAAALAQAGSTAAGTEIGDEKGATPVGGEEG------DPEATAARTGWGEPEETGSVAGEDQEGDEAEGSGAGLGGSADGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARMAEYAAAKAEEDAIKQERRAIRENPAVIPKLGAFFVHDDRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGVGRWRADALPSPKKNKGGGVER 254
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BLAST of mRNA_Ecto-sp9_F_contig9063.17249.1 vs.
Match: Btz (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS47_9PHAE)

HSP 1 Score: 232 bits (591), Expect = 1.820e-66
Identity = 205/256 (80.08%), Postives = 208/256 (81.25%), Query Frame = 1 
Query:    1 MSEDEGSSEEEDXXXXXXXXXXXXXSEAAGAAPSDTEEEGDGAPAAAALAQAGSTAAGTEIGDEKGATPVGREEGEAEGNSDPEATAAGTGWGEPEETGSVAGEDQEGDEAEGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMAEYAAAKAEEDAIKQERRAIRENPAVIPKLGAFFVHDDRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGVGRWRADALPSPKKNKSGGV 768
            MSEDEGS     XX   XXX     SEAAGAAPSDTEEEGDGAPA AALAQAGS+AAGTEIGD+KGATPVG EEGEAEGNSDPEATAAGTGWGEPEE GS+AGEDQEG EAEGS            XXXXXXXXXXXXXX                MAEYAAAKAEEDAIKQERRAIRENPAVIPKLGAFFVHDDRG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GVGRWRADALPSPKKNKSG V
Sbjct:    8 MSEDEGSXXXXXXXVISXXXDADVVSEAAGAAPSDTEEEGDGAPAIAALAQAGSSAAGTEIGDDKGATPVGGEEGEAEGNSDPEATAAGTGWGEPEERGSLAGEDQEGHEAEGSGGGWGGSADEKEXXXXXXXXXXXXXXDGEDTEEETEEEREARMAEYAAAKAEEDAIKQERRAIRENPAVIPKLGAFFVHDDRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-GVGRWRADALPSPKKNKSGDV 262
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9063.17249.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Btz2.380e-7590.77domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Btz1.820e-6680.08domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9063contigEcto-sp9_F_contig9063:1950..4251 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size777
Cds size504
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9063.17249.1prot_Ecto-sp9_F_contig9063.17249.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9063 1950..3219 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930973.1134133-CDS-Ecto-sp9_F_contig9063:1949..22091622930973.1134133-CDS-Ecto-sp9_F_contig9063:1949..2209Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9063 1950..2209 -
1692278974.5215037-CDS-Ecto-sp9_F_contig9063:1949..22091692278974.5215037-CDS-Ecto-sp9_F_contig9063:1949..2209Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9063 1950..2209 -
1622930973.1266708-CDS-Ecto-sp9_F_contig9063:2759..29621622930973.1266708-CDS-Ecto-sp9_F_contig9063:2759..2962Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9063 2760..2962 -
1692278974.530656-CDS-Ecto-sp9_F_contig9063:2759..29621692278974.530656-CDS-Ecto-sp9_F_contig9063:2759..2962Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9063 2760..2962 -
1622930973.1449888-CDS-Ecto-sp9_F_contig9063:3178..32191622930973.1449888-CDS-Ecto-sp9_F_contig9063:3178..3219Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9063 3179..3219 -
1692278974.5390074-CDS-Ecto-sp9_F_contig9063:3178..32191692278974.5390074-CDS-Ecto-sp9_F_contig9063:3178..3219Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9063 3179..3219 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930973.1645136-UTR-Ecto-sp9_F_contig9063:3219..32391622930973.1645136-UTR-Ecto-sp9_F_contig9063:3219..3239Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9063 3220..3239 -
1692278974.5475314-UTR-Ecto-sp9_F_contig9063:3219..32391692278974.5475314-UTR-Ecto-sp9_F_contig9063:3219..3239Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9063 3220..3239 -
1622930973.1868079-UTR-Ecto-sp9_F_contig9063:3999..42511622930973.1868079-UTR-Ecto-sp9_F_contig9063:3999..4251Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9063 4000..4251 -
1692278974.5581825-UTR-Ecto-sp9_F_contig9063:3999..42511692278974.5581825-UTR-Ecto-sp9_F_contig9063:3999..4251Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9063 4000..4251 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9063.17249.1

>prot_Ecto-sp9_F_contig9063.17249.1 ID=prot_Ecto-sp9_F_contig9063.17249.1|Name=mRNA_Ecto-sp9_F_contig9063.17249.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=168bp
MGRAGRDRVSGGRRPGGRRGRRERRGLGGLRRRKGWVRRRRWGGGGGFGR
RRGYRGRDRGGKGSTDGGVRGGEGGGRRDQAGAQGYPREPRRDPQARRLL
RARRQGRGRRRRRRIRRHGTCRQAAAAAAAGRRRGVRRGGGGGGGGGAVA
CGRSAFPQEEQERWRGAA
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mRNA from alignment at Ecto-sp9_F_contig9063:1950..4251-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9063.17249.1 ID=mRNA_Ecto-sp9_F_contig9063.17249.1|Name=mRNA_Ecto-sp9_F_contig9063.17249.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2302bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9063:1950..4251- (Ectocarpus species9 EcSCA_722f female)
ATGTCGGAGGACGAGGGGAGCAGCGAGGAAGAAGACGACGAGGTGATTTC
CGACCAAGAGGATGCAGACGTCGTCTCTGAGGCCGCGGGCGCGGCGCCTT
CTGACACCGAGGAGGAGGGTGATGGCGCGCCGGCCGCCGCCGCACTGGCC
CAAGCCGGGTCCACTGCCGCTGGAACTGAGATCGGCGACGAGAAAGGAGC
AACCCCTGTAGGCAGGGAGGAGGGAGAGGCGGAGGGCAACTCAGACCCCG
AGGTACGTGTGGCGTTACCCAAGCAGTGCACAAGAACACTGCTCTTTTTT
TGTGCAAGGTATGTATCCGCCAACCGTTGCTATGGACTTCTTTCTCCCGA
CCGCCGTGCTGCCCGTATCTTGTTGTTGCGAACAAATTGCCGATCATCAT
CCCACGCGAAGTAAATAGTATTATAGTGGTGGGTGCACACTTGCGTCTAG
GCGTCTTCTGTTATGGTGGTCTTGTGCTGCGGCTTCGAGAACAAGAAAAT
CAAACGGGCAGTCTTCGATCATGTAGAGCATCATGTATCGCACTACAACG
CGCCTCAGCAGTGAGTCACCGCCTCTTCCGTACAACAAGTCGGGTTATTC
AAAATCTTCTGAATAAATAGAATAGGTGAATACATACGTAGTCTGCCGTT
CAGAATAATGGGGTTGCGGCAGTTCGCTAGCAGCTGACCTGCAGCTGGCA
ATGTATTGCACTTGATCACAAGGCAGTTTTTTAAGTTTGCCTTACGCTCG
CCGTGGGGTGCACGGGGACAAATGAATCAAGAGAAAACGTGCTTCTATTA
TTGTAGCGGAACAATATGCTTCGTCCTGCGTGCAGCAGTGCGCGCCTTGT
AGAATGTCCGGCTCATTGCGCGCCTAGAATGTCCGGCTCAATGCTTGCAG
AAACCGTGTATTTTTTCGTTGCATGCGGTCAGTCACTTGCTGCATTTATG
GCGTCCCTCGTTGATTTTTCATTTGTCTCATGCACTGCCCTACGGTGTTC
TACTCGGATCAGGCCACGGCAGCCGGGACGGGATGGGGCGAGCCGGAAGA
GACAGGGTCAGTGGCGGGCGAAGGTGAGGGGAAGGGAGTGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAAAACGGCTCGTCATACTCT
TGAACAACGGAAAGTCAGACTCTTGAACAACGGGAAGTTCTTGTCCAGTG
TGATCATCGCGTCTCGAGCTGAAGTGTGCAGTCCACCCGCAGCCTACAAC
GTCGGCACTAACACCACAACAACAATCGTGTAAATGCAGACCAGGAGGGA
GACGAGGCCGAAGGGAGCGGCGGGGGTTGGGGGGGCTCCGCCGACGGAAA
GGATGGGTCCGAAGGAGGCGGTGGGGGGGGGGGGGGGGATTCGGCCGACG
GCGAGGATACCGAGGAAGAGACCGAGGAGGAAAGGGAAGCACGGATGGCG
GAGTACGCGGCGGCGAAGGCGGAGGAAGACGCGATCAAGCAGGTGAGCGC
TGCTGCACTCTCACGGAGGAAGTAGGCTGACCGGTTCCCTGGCGCCACGG
AGGGGTGGGTGTTGCCTTGTGGCCGGCAACCCTCGGCTACCGAACGGTCC
TGCTGGCCTTGTTCTGGATGGCTTTGCCACTTGAAACTTCTGGTACAGAT
TTTTTTTTTTCTTCTTTCGCCCGACGGTCGTTTGGTCGGGCACCGTTTGC
GGCCTGGTCGATTCTACACACCGCTCGTCTCTAAGTATGGTTTTTAATCT
TGGCGTTCAGGTCTCGTTTATCGATGCGTGTTGATGGCTTTAGGTTGCTT
CAGGAGACATTCAGGCGTCGCTTGCTGCCGCAACGAGTGCGCTACGTAGT
AGCGCTGTTGTGTACAGGATTTTTGGCAGACCCGGGCGTACACGTCTTCG
TGGCAGTGTTTTCCGGCGCACCTAGCCGCAAGCGAGCGACCATTGCCTGC
AGACTCCCCACCCCCGCCTTTGCATAGCCGCCGTTTTGTCCAGTCTCTCA
CGAACGAATCGAATCGAACGTGGATTCTCGGACGTCTCGCAGGAGCGCAG
GGCTATCCGCGAGAACCCCGCCGTGATCCCCAAGCTAGGCGCCTTCTTCG
TGCACGACGACAGGGGAGGGGGCGGCGGCGGCGGCGGCGGATCCGGCGGC
ATGGCACGTGCCGGCAAGCAGCAGCAGCAGCAGCGGCGGGACGGAGAAGA
GGGGTCCGGCGAGGAGGAGGAGGAGGAGGAGGGGGTGGGGCGGTGGCGTG
CGGACGCTCTGCCTTCCCCCAAGAAGAACAAGAGCGGTGGCGTGGAGCGG
CG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9063:1950..4251-

>mRNA_Ecto-sp9_F_contig9063.17249.1 ID=mRNA_Ecto-sp9_F_contig9063.17249.1|Name=mRNA_Ecto-sp9_F_contig9063.17249.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1008bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9063:1950..4251- (Ectocarpus species9 EcSCA_722f female)
ATGGGGCGAGCCGGAAGAGACAGGGTCAGTGGCGGGCGAAGATGGGGCGA
GCCGGAAGAGACAGGGTCAGTGGCGGGCGAAGACCAGGAGGGAGACGAGG
CCGAAGGGAGCGGCGGGGGTTGGGGGGGCTCCGCCGACGGAAAGGATGGG
TCCGAAGGAGGCGGTGGGGGGGGGGGGGGGGATTCGGCCGACGGCGAGGA
TACCGAGGAAGAGACCGAGGAGGAAAGGGAAGCACGGATGGCGGAGTACG
CGGCGGCGAAGGCGGAGGAAGACGCGATCAAGCAGACCAGGAGGGAGACG
AGGCCGAAGGGAGCGGCGGGGGTTGGGGGGGCTCCGCCGACGGAAAGGAT
GGGTCCGAAGGAGGCGGTGGGGGGGGGGGGGGGGATTCGGCCGACGGCGA
GGATACCGAGGAAGAGACCGAGGAGGAAAGGGAAGCACGGATGGCGGAGT
ACGCGGCGGCGAAGGCGGAGGAAGACGCGATCAAGCAGGAGCGCAGGGCT
ATCCGCGAGAACCCCGCCGTGATCCCCAAGCTAGGCGCCTTCTTCGTGCA
CGACGACAGGGGAGGGGGCGGCGGCGGCGGCGGCGGATCCGGCGGCATGG
CACGTGCCGGCAAGCAGCAGCAGCAGCAGCGGCGGGACGGAGAAGAGGGG
TCCGGCGAGGAGGAGGAGGAGGAGGAGGGGGTGGGGCGGTGGCGTGCGGA
CGCTCTGCCTTCCCCCAAGAAGAACAAGAGCGGTGGCGTGGAGCGGCGGA
GCGCAGGGCTATCCGCGAGAACCCCGCCGTGATCCCCAAGCTAGGCGCCT
TCTTCGTGCACGACGACAGGGGAGGGGGCGGCGGCGGCGGCGGCGGATCC
GGCGGCATGGCACGTGCCGGCAAGCAGCAGCAGCAGCAGCGGCGGGACGG
AGAAGAGGGGTCCGGCGAGGAGGAGGAGGAGGAGGAGGGGGTGGGGCGGT
GGCGTGCGGACGCTCTGCCTTCCCCCAAGAAGAACAAGAGCGGTGGCGTG
GAGCGGCG
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