mRNA_Ecto-sp9_F_contig9055.17246.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig9055.17246.1 vs.
Match: Nfu_N (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L0B8_9PHAE) HSP 1 Score: 680 bits (1754), Expect = 6.010e-243 Identity = 387/417 (92.81%), Postives = 393/417 (94.24%), Query Frame = 1
Query: 1 MMQAHLVALAAMALPVGAFFVVSPPLATTTARGSAAAAWPMAPLTMRVSGIESTPNPSSFKFDLDQTLYGPGSRATATRGITYSRAVVQQQQAGVPEAILRLLEIQGVDSVYALADWLCLNKKPSAKWDAIVPAAVEALGGAASSLDPLTLLMASGGEGGSAWKRSEMDGIAIRLQVSNGIPIQVEACPPGGSPLRRKLSPRFVEAMTEFVAGSGDEMAFFKGREWLPRGVRYPVEEGGDDEGGHGEEPAGA-SKKTAAESAEEALAAAVDEVELAYHESRLRGAVHAALILLQKNAEAAEASAAAXXXXXX-SGESTAEVRAATAVLQRSPAADKGEVVAAVDTLCVLAGDGSKDALDALVGFASSGEGPVPARRAAVAYIGGAGDAAGSAGLEAVSAVFRGDKNAGVRRTAGDAL 1245
MMQAH+VALAAMALPVGAFFV+SP ARGSAAAAWPMAP TMRVSGIESTPNPSSFKFDLDQTLYGPGS ATATRGITYSRAVVQQQQA VPEAILRLLEIQGVDSVYALADWLCLNKKPSAKWDAIVPAAV+ALGGAASSLDPLTLLMASGGEGGSAWKRSEMDGIAIRLQVSNGIPIQVEACPPGG+PLRRKLS RFVEAMTEFVAGSGDEMAFFKGREWLPRGVRYP EEGGDDE GHGEE GA SKKTAAE AEEALAAAVDEVELAYHESRLRGAVHAAL LLQKNAEAAEAS XXXXXX SGESTAEVRAAT VLQRSPAADKGEVVAAVDTLC LAGDGSKDALDALVGFA+SGEGPVPARRAAVAYIGGAGDAAGSAGL+AVSAVFRGD NAGVRRTAGDAL
Sbjct: 1 MMQAHVVALAAMALPVGAFFVMSPXXXXXXARGSAAAAWPMAPPTMRVSGIESTPNPSSFKFDLDQTLYGPGSGATATRGITYSRAVVQQQQAEVPEAILRLLEIQGVDSVYALADWLCLNKKPSAKWDAIVPAAVKALGGAASSLDPLTLLMASGGEGGSAWKRSEMDGIAIRLQVSNGIPIQVEACPPGGTPLRRKLSSRFVEAMTEFVAGSGDEMAFFKGREWLPRGVRYPAEEGGDDEDGHGEELTGATSKKTAAEFAEEALAAAVDEVELAYHESRLRGAVHAALNLLQKNAEAAEASXXXXXXXXXTSGESTAEVRAATTVLQRSPAADKGEVVAAVDTLCALAGDGSKDALDALVGFAASGEGPVPARRAAVAYIGGAGDAAGSAGLKAVSAVFRGDNNAGVRRTAGDAL 417
BLAST of mRNA_Ecto-sp9_F_contig9055.17246.1 vs.
Match: Hypothetical (protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VDY6_9STRA) HSP 1 Score: 128 bits (321), Expect = 1.240e-28 Identity = 131/411 (31.87%), Postives = 193/411 (46.96%), Query Frame = 1
Query: 142 VSGIESTPNPSSFKFDLDQTLYGPGSRATATRGITYSRAVVQQ--QQAGVPEAILRLLEIQGVDSVYALADWLCLNKKPSAKWDAIVPAAVEALGGAASSLDPLTLLM------ASGGEGGSAWKRSEMDG-IAIRLQVSNGIPIQVEACPPGGSPLRRKLSPRFVEAMTEFV----------AGSGDEMAFFKGREWLPRGVRYPVEEGGDDEGGHGEEPAGASKKTAAESAEEALAAAV------DEVELAYHESRLRGAVHAA--------LILLQKNAEAAEASAAAXXXXXXSGESTAEVRAATAVLQRSPAADKGEVVAAVDTLCVLAGDGSKDALDALVGFASSGEGPVPARRAAVAYIGGAGDAA--------GSAGLE--AVSAVFRGDKNAGVRRTAGDAL 1245
+SGIESTPNPSSF + G A + RG T++ + +PE I +L++ GV SV+A+A L +NKK SAKW+ ++P AL G + + +L+ S GS S G + +R+Q SN IPIQVE G+ RRKLSP+F E+M + + + +++ FF GR+W+ RG+RY + E DD+G + A A+ + +E L DE++ AY RL G V + L +N E + +V +L + AVD C LA G + AL L F SS +G +PARR A+A++GG GD S+ L A+ + + +K+ +RRTAGDAL
Sbjct: 65 ISGIESTPNPSSFLIRVAAPPTGLEDLAGSLRGKTFASGSFTRVSDHDRLPE-IASILDVDGVVSVFAMATALTINKKASAKWEVVLPLVTTALIGNDNDQNDQDILLQGLLALTSAANAGSPQSASASAGQVRMRMQFSNKIPIQVEGTGYLGTVQRRKLSPKFQESMESMMQMQEGDSNSNSATSNKLDFFGGRKWVDRGIRY-LPESHDDDGDGSRDSASATASSITPEEQELLELEAVLQTESDEIDAAYSTRRLAGIVANSNDGSPLTLTPLEDRNPE-----------NPSNNXXXVDVEHQNQILILD--------LEAVDRSCDLAEKGDEQALQVLATFVSSRQGSLPARRNALAFLGGTGDIGLTTEHMNVNSSDLVFMAIVSALQHEKSPIMRRTAGDAL 454
BLAST of mRNA_Ecto-sp9_F_contig9055.17246.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0H0H6_9EUKA) HSP 1 Score: 118 bits (296), Expect = 1.000e-26 Identity = 76/198 (38.38%), Postives = 113/198 (57.07%), Query Frame = 1
Query: 118 PMAPLTMRVSGIESTPNPSSFKFDLDQTL--YGPGSRATATRGITYSRAVVQQQQAGVPEAILRLLEIQGVDSVYALADWLCLNKKPSAKWDAIVPAAVEALGGAASSLDPLTLLMASGGEGGSAWKRSEMDG-IAIRLQVSNGIPIQVEA-CPPGGSPLRRKLSPRFVEAMTEFVAGSGDEMAFFKGREWLPRGVRY 699
P+ + +V+ +ESTP+P +FK LD+ L + RG T+ R PEA+ +LE+ GV+SV DW+ + K+ A W ++ + ++GGA+ +L A E S K ++G I +RLQVSNGIPIQVEA C G+ R KLS RF EA+ +F+ G+E +FF+GR+WL +G+RY
Sbjct: 43 PLPAIFAKVTLVESTPSPDAFKLSLDEVLPVRSEEEKEERKRGKTF-RGSQAFDLLVAPEAVKGVLELDGVESVLVSTDWITVTKRAKASWGDLLEKVITSIGGASPTLVLPDAPRAGNKE--SEGKEGGLEGGIKMRLQVSNGIPIQVEATCISDGTSKRYKLSGRFEEAIADFLKIPGNEQSFFQGRKWLNKGIRY 237
BLAST of mRNA_Ecto-sp9_F_contig9055.17246.1 vs.
Match: Hypothetical (protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YPQ0_9EUKA) HSP 1 Score: 114 bits (284), Expect = 1.980e-24 Identity = 110/329 (33.43%), Postives = 149/329 (45.29%), Query Frame = 1
Query: 286 PEAILRLLEIQGVDSVYALADWLCLNKKPSAKWDAIVPAAVEALGGAASSLD-PLTLLMASGGEGGSAWKR-SEMDGIAIRLQVSNGIPIQVEACPPGGSPLRRKLSPRFVEAMTEFVAGSGDEMAFFKGREWLPRGVRYPVEEGGDDEGGHGEEPAGASKKTAAESAEEALAAAVDEVELAYHESRLRGAVHAALILLQKNAEAAEASAAAXXXXXXSGESTAEVRAATAVLQR--SPAADKGEVVAAVDTLCVLAGDGSKDALDALVGFASSGEGPVPARRAAVAYIGGAGDAAGSAGL-----EAVSAVFRGDKNAGVRRTAGDAL 1245
P A+ LL+I GV SVY L W+ + K+ A W ++ ++ALGGA+ SL P LL+ S+M+GI +RLQVSNGIPIQ+EA G RRKLS RF E+++ F++ G++ AFF GR+WL +G+RY GH S EAL DE+E Y RL+ AE AE + + A V V Q+ P A K A++ALV F G G + RR AVA +G G+ + +S F + +RRTAGDAL
Sbjct: 8 PAAVQALLDIPGVASVYVLPTWVTVTKEKKAAWGEMLMPCIDALGGASPSLSLPTNLLLTEXXXXXXXXXXXSDMEGIQMRLQVSNGIPIQIEAKAMDGMSERRKLSGRFEESISTFLSIPGNDQAFFDGRKWLNKGLRY----------GH-------------VSLSEALDTLADEIETMYPPQRLKALA----------AEEAEYTLVDLQALLNDLDDLASVDTVAEVAQKHEDPMAQKA-------------------AVNALVRFVQRGTGSMATRRHAVASLGIMGEXXXXXXXXXXXXDCLSLCFENEPAPFLRRTAGDAL 284
BLAST of mRNA_Ecto-sp9_F_contig9055.17246.1 vs.
Match: Hypothetical (protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2XB48_9EUKA) HSP 1 Score: 93.6 bits (231), Expect = 1.190e-17 Identity = 95/265 (35.85%), Postives = 122/265 (46.04%), Query Frame = 1
Query: 481 SAWKRSEMDGIAIRLQVSNGIPIQVEACPPGGSPLRRKLSPRFVEAMTEFVAGSGDEMAFFKGREWLPRGVRYPVEEGGDDEGGHGEEPAGASKKTAAESAEEALAAAVDEVELAYHESRLRGAVHAALILLQKNAEAAEASAAAXXXXXXSGESTAEVRAATAVLQRSPAADKGEVVAAVDTLCVLAG-----DGSKDALDALVGFASSGEGPVPARRAAVAYIGGAGDAAGSAGL-----EAVSAVFRGDKNAGVRRTAGDAL 1245
S+ SEM GI +RLQVSNGIPIQ+EA G+ RRKLS RF E++ F++ G++ FF GR+WL +G+RY GH S EAL DE+E Y RL NA A+E S A A LQ P +A+VDT+ +A K A+DALV F G G + RR AVA +G GDA G+ + +S F + +RRTAGDAL
Sbjct: 4 SSSSSSEMQGIQMRLQVSNGIPIQIEAKSTDGTSDRRKLSGRFEESIMAFLSTPGNDQLFFDGRKWLNKGLRY----------GHA-------------SLSEALDTLADEIETMYPPERL-------------NALASEDS-----------------NQALADLQ--PLLKDLHDLASVDTVAEIAQKHEDPSARKAAIDALVRFVQRGSGNMATRRHAVASLGIMGDAIEELGVAGAVVDCLSFCFENEPAPFLRRTAGDAL 213
BLAST of mRNA_Ecto-sp9_F_contig9055.17246.1 vs.
Match: HEAT (repeat-containing protein n=1 Tax=Marininema halotolerans TaxID=1155944 RepID=A0A1I6NZW2_9BACL) HSP 1 Score: 78.2 bits (191), Expect = 3.710e-12 Identity = 59/188 (31.38%), Postives = 94/188 (50.00%), Query Frame = 1
Query: 136 MRVSGIESTPNPSSFKFDLDQTLYGPGSRATATRGITYSRAVVQQQQAGVPEAILRLLEIQGVDSVYALADWLCLNKKPSAKWDAIVPAAVEALGGAASSLDPLTLLMASGGEGGSAWKRSEMDGIAIRLQVSNGIPIQVEACPPGGSPLRRKLSPRFVEAMTEFVAGSGDEMAFFKGREWLPRGVRY 699
M++ IE TP+P S K +LDQ + ++G TY+ V + + A PE + +L IQGV S++ +AD+L +++ P +W I+P E G +S+ S EG S+ + + LQ G+PIQ++ G R L RF +A+ E + S + + R+W RGVRY
Sbjct: 1 MQIKSIEPTPSPHSMKVNLDQKV---------SKGATYT--VDRSEDA--PEYVKHILAIQGVKSIFHVADFLAIDRDPKVEWQQILPQVREIFGEKSSAK--------SSEEGTSSSTEEAFGEVKVFLQTFRGLPIQLKLVS-FGEEKRYSLPERFAKAVMEAQSASANMVME---RKWEERGVRY 163
BLAST of mRNA_Ecto-sp9_F_contig9055.17246.1 vs.
Match: conserved (virulence factor C family protein n=1 Tax=Brevibacillus massiliensis TaxID=1118054 RepID=UPI00030A3AF3) HSP 1 Score: 77.0 bits (188), Expect = 8.780e-12 Identity = 60/189 (31.75%), Postives = 95/189 (50.26%), Query Frame = 1
Query: 136 MRVSGIESTPNPSSFKFDLDQTLYGPGSRATATRGITYSRAVVQQQQAGVPEAILRLLEIQGVDSVYALADWLCLNKKPSAKWDAIVPAAVEALG-GAASSLDPLTLLMASGGEGGSAWKRSEMDGIAIRLQVSNGIPIQVEACPPGGSPLRRKLSPRFVEAMTEFVAGSGDEMAFFKGREWLPRGVRY 699
M++ IE TP+P+S K +LD+ L PG + T T Q+ + PE I +LLEI+GV S++ +AD++ L ++ +A W AI+ A E LG G A S+ + W+ + + +Q+ IP+QV+ G +R L RF +A A S + R+W+ +GVRY
Sbjct: 1 MKIVSIEPTPSPNSMKLNLDEKL-PPGVKMTYT----------QENRERAPEQIKKLLEIEGVKSIFHVADFIALERRANADWKAILAQAGEVLGEGTAQSVQAVAQNSQD-----DQWQE-----VNVFVQMFRHIPMQVKVTA-GLEQMRVGLPERFTQAAMRAGAASAN---LVMERKWVEQGVRY 164
BLAST of mRNA_Ecto-sp9_F_contig9055.17246.1 vs.
Match: PBS (lyase n=1 Tax=Marinithermofilum abyssi TaxID=1571185 RepID=A0A8J2VE20_9BACL) HSP 1 Score: 76.6 bits (187), Expect = 1.170e-11 Identity = 59/188 (31.38%), Postives = 87/188 (46.28%), Query Frame = 1
Query: 136 MRVSGIESTPNPSSFKFDLDQTLYGPGSRATATRGITYSRAVVQQQQAGVPEAILRLLEIQGVDSVYALADWLCLNKKPSAKWDAIVPAAVEALGGAASSLDPLTLLMASGGEGGSAWKRSEMDGIAIRLQVSNGIPIQVEACPPGGSPLRRKLSPRFVEAMTEFVAGSGDEMAFFKGREWLPRGVRY 699
M++ IE TP+P+S K +D+T A++G TY+R + Q P I RLL IQGV SV+ +AD+L + + P W I+ E G S D E S + + + LQ G+PIQ++ G R L RF EA+ + S + + R+W RG+RY
Sbjct: 1 MKILSIEPTPSPNSMKVTVDET---------ASKGRTYTR----ENQEEAPGIIRRLLSIQGVKSVFRVADFLAVERNPRVDWQPILAQVREVFGEETPSADQ---------EKSSPETKEAFGEVKVFLQTFRGLPIQIKLVV-GDEEKRIALPDRFAEAVMKAQTASPNMVME---RKWEDRGLRY 162
BLAST of mRNA_Ecto-sp9_F_contig9055.17246.1 vs.
Match: virulence (factor n=1 Tax=Brevibacillus marinus TaxID=2496837 RepID=UPI000F84BC4D) HSP 1 Score: 76.6 bits (187), Expect = 1.220e-11 Identity = 59/188 (31.38%), Postives = 89/188 (47.34%), Query Frame = 1
Query: 136 MRVSGIESTPNPSSFKFDLDQTLYGPGSRATATRGITYSRAVVQQQQAGVPEAILRLLEIQGVDSVYALADWLCLNKKPSAKWDAIVPAAVEALGGAASSLDPLTLLMASGGEGGSAWKRSEMDGIAIRLQVSNGIPIQVEACPPGGSPLRRKLSPRFVEAMTEFVAGSGDEMAFFKGREWLPRGVRY 699
MR+ IE TP+P+S K +LD+ L +G TY+RA Q P I ++L I GV SVY AD+L + + P+A W I+ EA G A ++ P E AW+ + + +Q+ IP+Q++ G R L RF A+ + A S + R+W+ +G RY
Sbjct: 1 MRILSIEPTPSPNSMKVNLDERL------PAGQKGTTYTRA----NQHTAPAPIAQILAIDGVKSVYRAADFLAVERIPTADWPTILSQVREAFGEAGAAPAPSGQTPEQAAE--DAWRE-----VTVLIQMFRNIPMQIKLLA-DGEERRFGLPDRFKAAVMKAQAAS---VNLIVERQWVEQGTRY 167
BLAST of mRNA_Ecto-sp9_F_contig9055.17246.1 vs.
Match: conserved (virulence factor C family protein n=1 Tax=Fictibacillus gelatini TaxID=225985 RepID=UPI0004139C08) HSP 1 Score: 73.6 bits (179), Expect = 1.230e-10 Identity = 55/189 (29.10%), Postives = 92/189 (48.68%), Query Frame = 1
Query: 136 MRVSGIESTPNPSSFKFDLDQTLYGPGSRATATRGITYSRAVVQQQQAGVPEAILRLLEIQGVDSVYALADWLCLNKKPSAKWDAIVPAAVEALGG-AASSLDPLTLLMASGGEGGSAWKRSEMDGIAIRLQVSNGIPIQVEACPPGGSPLRRKLSPRFVEAMTEFVAGSGDEMAFFKGREWLPRGVRY 699
M++ IE TP+P+S K +LD+TL G T Y++ + A P+ I RL EI GV S+Y +AD++ L++ P A W+ ++ + G +A ++ T K+ E + I + +Q G+P+Q++ +R L RF++A E S + R+W +GVRY
Sbjct: 1 MKIKSIEPTPSPNSMKINLDETLPG-------TERYNYTKETI----ADAPDYIKRLFEIDGVKSIYHVADFIALDRHPKADWEEVLAGVRKVFGETSAIKIEDET----------KQEKKEEYEEITVFIQKFRGLPMQIKLTTEQEE-VRVGLPERFMKAALEAQKASTN---LVMERKWEEQGVRY 164 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9055.17246.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig9055.17246.1 >prot_Ecto-sp9_F_contig9055.17246.1 ID=prot_Ecto-sp9_F_contig9055.17246.1|Name=mRNA_Ecto-sp9_F_contig9055.17246.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=415bp MMQAHLVALAAMALPVGAFFVVSPPLATTTARGSAAAAWPMAPLTMRVSGback to top mRNA from alignment at Ecto-sp9_F_contig9055:3007..5398+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig9055.17246.1 ID=mRNA_Ecto-sp9_F_contig9055.17246.1|Name=mRNA_Ecto-sp9_F_contig9055.17246.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2392bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9055:3007..5398+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9055:3007..5398+ >mRNA_Ecto-sp9_F_contig9055.17246.1 ID=mRNA_Ecto-sp9_F_contig9055.17246.1|Name=mRNA_Ecto-sp9_F_contig9055.17246.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2490bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9055:3007..5398+ (Ectocarpus species9 EcSCA_722f female)back to top |