mRNA_Ecto-sp9_F_contig9035.17227.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig9035.17227.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZB3_ECTSI) HSP 1 Score: 536 bits (1382), Expect = 5.350e-189 Identity = 265/271 (97.79%), Postives = 267/271 (98.52%), Query Frame = 1
Query: 1 GLVIAVKGTVTASGEMLVDDWCPAGIPPPVPPSPSKKVGGRHDPLLVSLLVDFVAGYLGGVEDQEGTSARIGRVIVCGDSVAAPSAELLSGSGPSKRLNAEQQRLVASPMKELDTVLALLAAAAPVDVMPGESDPANYTLPQQPLHPCLLRNASRFGALKRVTNPHEAKIGERVFLGSSGQPLLDMARYTTPEAEADKDAKPACLRRLEEMLKWRHMAPTAPETLGCYPFVTEDPFVVEECPDIFFAGNQPQFATGILEGADGHKVRRFCV 813
GLVIAVKGTVTASGEMLVDDWCPAGIPPPVPPSPSKKVGGRHDPLLVSLLVDFVAGYLGGVEDQEGTSARIGRVIVCGDSVAAPSAELLSG+GPSKRLNAEQQRLVASPMKELDT+LALLAAAAPVDVMPGESDPANYTLPQQPLHPCLLRNASRFGALKRVTNPHEAKIGERVFLGSSGQPLLDMARYTTPEAEADKDAKPACLRRLEEMLKWRHMAPTAPETLGCYPFVTEDPFVVEECPDIFFAGNQPQFAT ILEGADGHK R CV
Sbjct: 176 GLVIAVKGTVTASGEMLVDDWCPAGIPPPVPPSPSKKVGGRHDPLLVSLLVDFVAGYLGGVEDQEGTSARIGRVIVCGDSVAAPSAELLSGTGPSKRLNAEQQRLVASPMKELDTILALLAAAAPVDVMPGESDPANYTLPQQPLHPCLLRNASRFGALKRVTNPHEAKIGERVFLGSSGQPLLDMARYTTPEAEADKDAKPACLRRLEEMLKWRHMAPTAPETLGCYPFVTEDPFVVEECPDIFFAGNQPQFATSILEGADGHKGRVVCV 446
BLAST of mRNA_Ecto-sp9_F_contig9035.17227.1 vs.
Match: DNA (polymerase alpha/epsilon subunit B-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHI6_9STRA) HSP 1 Score: 238 bits (606), Expect = 2.810e-71 Identity = 141/329 (42.86%), Postives = 184/329 (55.93%), Query Frame = 1
Query: 1 GLVIAVKGTVTASGEMLVDDWCPAGIPP-PVPPSPSKK-------------VGGRHDPLLVSLLVDFVAGYLGGVEDQEGTSARIGRVIVCGDSVAAPSAELL---SGSGPSKRLNAEQQRLVASPMKELDTVLALLAAAAPVDVMPGESDPANYTLPQQPLH---------------------------------------------PCLLRNASRFGALKRVTNPHEAKIGERVFLGSSGQPLLDMARYTTPEAEADKDAKPAC--LRRLEEMLKWRHMAPTAPETLGCYPFVTEDPFVVEECPDIFFAGNQPQFATGILEGADGHK 795
G+V+AV+G+V A G+M V+ WCP G+PP P PP + GG DPL L +D +AGYLGG D E AR+ RV+VCG+S L SGS S +L+AEQQR +P++E D LA +A PVD+MP SD +NY LPQ+ H PCLL ASR+ + TNPHEA +G R+ LG++GQPL D+ +YT A D + L+ LE ML+W+H+APTAP+TLGCYPF+TEDPFV+EECP +FFAGNQP+FAT ++EG DG +
Sbjct: 175 GIVVAVRGSVRADGDMAVEAWCPPGLPPQPSPPEGAAHPPGACLLLVSGMLAGGPQDPLPTRLFLDHLAGYLGGAGDHE-QIARVVRVVVCGNSAXXXXXXLAGAASGSIGSGKLSAEQQRERTAPLRECDAELAQVAV--PVDIMPSASDASNYMLPQRAAHMLFRKRAIQQRKGNIRPNVAAAXXXXXXXXXXXXXXXXXXXXXXHPCLLPLASRYPNARLATNPHEAWVGTRLVLGTAGQPLDDILQYTAAAEGAGGDEGDSARRLQMLENMLRWQHIAPTAPDTLGCYPFLTEDPFVLEECPHVFFAGNQPRFATRLVEGHDGQQ 500
BLAST of mRNA_Ecto-sp9_F_contig9035.17227.1 vs.
Match: DNA (polymerase delta regulatory subunit 55 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IIY7_KLENI) HSP 1 Score: 223 bits (569), Expect = 5.510e-67 Identity = 127/284 (44.72%), Postives = 169/284 (59.51%), Query Frame = 1
Query: 1 GLVIAVKGTVTASGEMLVDDWCPAGIPP-PV-PPSPSKKVGGRH---------------DPLLVSLLVDFVAGYLGGVEDQEGTSARIGRVIVCGDSVAAPSAELLSGSGPSKRLNAEQQRLVASPMKELDTVLALLAAAAPVDVMPGESDPANYTLPQQPLHPCLLRNASRFGALKRVTNPHEAKIGERVFLGSSGQPLLDMARYTTPEAEADKDAKPACLRRLEEMLKWRHMAPTAPETLGCYPFVTEDPFVVEECPDIFFAGNQPQFATGILEGADGHKVR 801
G+V+AV G A GE V+ +PP P+ PP+P+ V DPL LLVD + G+LGG + Q+ SAR RV++ GDS+ AP +LL+G L+A +Q +P++ELD +L LAAA PVDVMPG +DPANY+LPQQPLHPCL AS++ TNPH + FLG++GQP+ D+ RY + L LE L+WRH+APTAP+TL CYPF DPF++ CP ++FAGNQ FAT +L+G DG +VR
Sbjct: 138 GVVVAVLGVEQADGEFAVEAVLLPDLPPQPLRPPAPAAGVAPPRYVALVSGLGVGAPGVDPLQTQLLVDHLGGHLGGSQAQQ-LSARTVRVVLAGDSLHAPP-DLLTGQA----LSAREQAAAVAPIQELDLLLTQLAAALPVDVMPGSTDPANYSLPQQPLHPCLFPGASQYDTFSAATNPHRFSVDGVDFLGTAGQPVADLLRYCGRDDP---------LALLESTLRWRHLAPTAPDTLACYPFTDSDPFLLATCPAVYFAGNQAAFATTLLQGTDGQRVR 406
BLAST of mRNA_Ecto-sp9_F_contig9035.17227.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XWT2_9STRA) HSP 1 Score: 223 bits (568), Expect = 3.690e-66 Identity = 131/305 (42.95%), Postives = 169/305 (55.41%), Query Frame = 1
Query: 1 GLVIAVKGTVTASGEMLVDDWCPAGIPPP-------VPPSPSKK--------------VGGRHDPLLVSLLVDFVAGYLGGVEDQEGTSARIGRVIVCGDSVAA-PSAELLSGSGPSKRLNAEQQRLVASPMKELDTVLALLAAAAPVDVMPGESDPANYTLPQQPLHPCLLRNASRFGALKRVTNPHEAKIGERVFLGSSGQPLLDMARYTTPEAEADK-------------DAKPAC-----LRRLEEMLKWRHMAPTAPETLGCYPFVTEDPFVVEECPDIFFAGNQPQFATGILEGADGHK 795
GL AV G + A GE +V+DWC G+PPP V P + GG DP+ ++LVDFVAG LGG D+ A I RVI+ G+S+A E L K L A Q +A P+ +LD +LA LA+A PVDVMPG D ++ +PQQP H LL A R+ +L+R NP+EA + R+ LGSSGQP+ D+ ++T P A K +A+ A L LE ML WRHMAPTAP+TL CYPF EDPFV+E CP +FFAGNQ F +++ G K
Sbjct: 170 GLTAAVLGVMGADGEFVVEDWCVPGVPPPLENTNGAVAPKAEPEGDEGPYLLLASGLGFGGATDPMPAAMLVDFVAGRLGGAADRSDVGANICRVILAGNSMAPLQDGERLR----DKNLPAADQERIAGPLYQLDAMLAQLASACPVDVMPGADDASSVAMPQQPFHRSLLPTACRYSSLQRPPNPYEALVEGRLVLGSSGQPVTDLLKFTRPAAPKPKGENDDGDDEGNATEAEGAAAADFTLSALERMLGWRHMAPTAPDTLPCYPFYNEDPFVLEHCPQVFFAGNQKAFGQRLIDAPGGGK 470
BLAST of mRNA_Ecto-sp9_F_contig9035.17227.1 vs.
Match: Uncharacterized (protein n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KWA5_PHYPA) HSP 1 Score: 218 bits (554), Expect = 9.760e-65 Identity = 113/283 (39.93%), Postives = 170/283 (60.07%), Query Frame = 1
Query: 1 GLVIAVKGTVTASGEMLVDDWCPAGIPPPVPPSPSK-----------KVGGRH-DPLLVSLLVDFVAGYLGGVEDQEGTSARIGRVIVCGDSVAAPSAELLSGSGPSKRLNAEQQRLVASPMKELDTVLALLAAAAPVDVMPGESDPANYTLPQQPLHPCLLRNASRFGALKRVTNPHEAKIGERVFLGSSGQPLLDMARYTTPEAEADKDAKPACLRRLEEMLKWRHMAPTAPETLGCYPFVTEDPFVVEECPDIFFAGNQPQFATGILEGADGHKVRRFCV 813
G+V+A+ G GE V+D AG+PP P S K+GG +PL + LLVD + G+LG V++Q S++I R+++ G S+ +L + + ++A+ Q + P+KELD L ++AA PVD+MPG +DPAN++LPQQPLH CL A+ + TNPH+ ++ + +FLG+SGQ + D+++Y+ E D +E L WRH+APTAP+TLGCYPF+ DPF++E CP ++F GNQP +A+ +L G KVR C+
Sbjct: 145 GVVVAIVGREEKDGEFFVEDVMVAGLPPQKPLKNSDVDKFVLFVSGLKIGGHGTNPLDLQLLVDHLTGHLGEVQEQS-LSSQIVRMVIAGGSL-----DLQTSISNGQPMSAKNQSKLVEPVKELDLALTQISAAMPVDIMPGANDPANFSLPQQPLHKCLFPGATMYNTFVSATNPHQFELDDVLFLGTSGQNIDDLSKYSEAEDRLDF---------MERTLMWRHLAPTAPDTLGCYPFIDRDPFILETCPHVYFCGNQPHYASRLLTGPSAQKVRLVCI 412
BLAST of mRNA_Ecto-sp9_F_contig9035.17227.1 vs.
Match: Uncharacterized (protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=B8LLG4_PICSI) HSP 1 Score: 218 bits (554), Expect = 1.050e-64 Identity = 122/286 (42.66%), Postives = 171/286 (59.79%), Query Frame = 1
Query: 1 GLVIAVKGTVTASGEMLVDDWCPAGIPP--PVPPSPSKK------------VGG-RHDPLLVSLLVDFVAGYLGGVEDQEGTSARIGRVIVCGDSVAAPSAELLSGSGPSKRLNAEQQRLVASPMKELDTVLALLAAAAPVDVMPGESDPANYTLPQQPLHPCLLRNASRFGALKRVTNPHEAKIGERVFLGSSGQPLLDMARYTTPEAEADKDAKPACLRRLEEMLKWRHMAPTAPETLGCYPFVTEDPFVVEECPDIFFAGNQPQFATGILEGADGHKVRRFCV 813
G+V A+ G + G+ V AG+PP P+ S K VG + +PL LLVD+V G+ G E ++ +A+I RVI+ GDSV + LL+G L ++QR +A P+KELD L LAAA PVD+MPG +DPAN++LPQQPLH CL AS + TNPH+ + FLG+SGQ + D+ +Y+ + + D +E LKWRH+APTAP+TLGCYPF DPFV+E+CP ++F GNQ ++A+ +LEG++G VR C+
Sbjct: 145 GVVAALHGKEGSDGDFYVQSILEAGLPPQHPLHSGYSLKDNKYIVLVSGLMVGSMKSNPLQFQLLVDYVTGHSGD-EQEQSMAAQIVRVIIAGDSVDMQQS-LLAGQS----LGLKEQRRLAEPIKELDLALTQLAAAMPVDIMPGPNDPANFSLPQQPLHKCLFSGASAYNTFVSATNPHQFDLDGVCFLGTSGQNIDDLGKYSDAKEKLDY---------MERTLKWRHLAPTAPDTLGCYPFTDRDPFVIEDCPHVYFCGNQKKYASRLLEGSEGQVVRLVCI 415
BLAST of mRNA_Ecto-sp9_F_contig9035.17227.1 vs.
Match: DNA (polymerase delta small subunit n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007F003C6) HSP 1 Score: 216 bits (551), Expect = 2.600e-64 Identity = 116/286 (40.56%), Postives = 170/286 (59.44%), Query Frame = 1
Query: 1 GLVIAVKGTVTASGEMLVDDWCPAGIPPPVPPSPSKKVG---------------GRHDPLLVSLLVDFVAGYLGGVEDQEGTSARIGRVIVCGDSVAAPSAELLSGSGPSKRLNAEQQRLVASPMKELDTVLALLAAAAPVDVMPGESDPANYTLPQQPLHPCLLRNASRFGALKRVTNPHEAKIGERVFLGSSGQPLLDMARYTTPEAEADKDAKPACLRRLEEMLKWRHMAPTAPETLGCYPFVTEDPFVVEECPDIFFAGNQPQFATGILEGADGHKVRRFCV 813
G+V+A+ G T +G+ LV+D AG+PP + P K+G +PL V LLVD + G+LG E ++ +A+I +V++ GDSV P ELL+G + L + Q ++ P+KE+D +L +AA+ P+D+MPG +DP+N+ +PQQPLH CL +++ + K TNPH ++ FLG+SGQ + D +Y+ E + LE LKWRH+APTAP TLGCYPF DPF VE CP ++FAGNQ +F T ++ G+DG VR +
Sbjct: 143 GIVVALHGKETGAGDFLVEDVLEAGLPPQL--DPPNKLGEDKYVVFVSGLNLGSSSSNPLQVQLLVDHITGHLGD-EKEQNNAAQIVQVVIAGDSVEIPR-ELLNG----QNLAPKDQSRLSEPIKEVDILLTQIAASIPLDIMPGPNDPSNFAMPQQPLHRCLFPSSASYNTFKSCTNPHSFELDGVRFLGTSGQNIHDFEKYSEGSEEVEF---------LERTLKWRHIAPTAPNTLGCYPFTDRDPFFVESCPHVYFAGNQNKFGTRLITGSDGQVVRLISI 411
BLAST of mRNA_Ecto-sp9_F_contig9035.17227.1 vs.
Match: DNA (polymerase delta small subunit isoform X1 n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A443PIE3_9MAGN) HSP 1 Score: 216 bits (549), Expect = 1.600e-63 Identity = 120/284 (42.25%), Postives = 169/284 (59.51%), Query Frame = 1
Query: 1 GLVIAVKGTVTASGEMLVDDWCPAGIPP--PVPPSPSK----------KVGGRH-DPLLVSLLVDFVAGYLGGVEDQEGTSARIGRVIVCGDSVAAPSAELLSGSGPSKRLNAEQQRLVASPMKELDTVLALLAAAAPVDVMPGESDPANYTLPQQPLHPCLLRNASRFGALKRVTNPHEAKIGERVFLGSSGQPLLDMARYTTPEAEADKDAKPACLRRLEEMLKWRHMAPTAPETLGCYPFVTEDPFVVEECPDIFFAGNQPQFATGILEGADGHKVRRFCV 813
GLV+A+ G T+ G+ V D AG+ P P+P + VG +PL + LLVD + G+LG ++Q +++I RV++ G+SV P LL+G + L ++ Q + P KELD L LAAA PVD+MPG DPANY+LPQQPLH CL AS + TNPH ++ FLG+SGQ + D+ +Y+ + + D LE L WRH+APTAP TLGCYPF+ +DPF++E CP ++F GNQ ++ T +L+G++G KVR CV
Sbjct: 190 GLVVALHGKETSDGDFFVQDILEAGLAPQKPLPLGSDEDKYVVFVSGLSVGSSESNPLQIQLLVDHMTGHLGDAKEQN-IASQIVRVVIVGNSVNVP-VRLLTG----QNLASKDQSKLFEPFKELDIFLTQLAAALPVDIMPGSDDPANYSLPQQPLHRCLFPGASAYNTFVSCTNPHSFELDTVRFLGTSGQNIDDLDKYSDAKNKLDF---------LERTLHWRHLAPTAPNTLGCYPFIDKDPFLIESCPHVYFIGNQSKYETRLLQGSEGQKVRLICV 458
BLAST of mRNA_Ecto-sp9_F_contig9035.17227.1 vs.
Match: Uncharacterized (protein n=1 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001BF810B5) HSP 1 Score: 212 bits (539), Expect = 2.030e-63 Identity = 116/284 (40.85%), Postives = 173/284 (60.92%), Query Frame = 1
Query: 1 GLVIAVKGTVTASGEMLVDDWCPAGIPP----PVPPSPSKKV---------GGRHDPLLVSLLVDFVAGYLGGVEDQEGTSARIGRVIVCGDSVAAPSAELLSGSGPSKRLNAEQQRLVASPMKELDTVLALLAAAAPVDVMPGESDPANYTLPQQPLHPCLLRNASRFGALKRVTNPHEAKIGERVFLGSSGQPLLDMARYTTPEAEADKDAKPACLRRLEEMLKWRHMAPTAPETLGCYPFVTEDPFVVEECPDIFFAGNQPQFATGILEGADGHKVRRFCV 813
G+V+A+ G T +G+ LV D AG+PP P+ S K V +PL LLVD + G+LG E ++G +A+I +V GDS+ P LL+G + L ++ Q ++ P+KELD +L +AA+ P+D+MPG +DPAN++LPQQPLH CL +S + + TNPH ++ FLG+SGQ + D+ +Y+ EA+ DK + +E L+WRH+APTAP TLGCYPF DPF +E CP ++F GNQ ++ T +++G++G VR C+
Sbjct: 63 GIVVALHGKETDAGDFLVQDVLEAGLPPQIELPLKSSEDKYVVFVSGLSVGSSTSNPLRFQLLVDHITGHLGD-EKEQGIAAKIVHFVVAGDSIEIPRG-LLNG----QNLASKDQSRLSEPIKELDILLTQIAASLPLDIMPGPNDPANFSLPQQPLHRCLFPGSSAYNTFRSCTNPHCFELDNIRFLGTSGQNVNDLEKYS--EAK-DK------IEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFFIESCPHVYFVGNQNEYKTDLIKGSEGQFVRLICI 331
BLAST of mRNA_Ecto-sp9_F_contig9035.17227.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYY3_9STRA) HSP 1 Score: 216 bits (550), Expect = 4.560e-63 Identity = 124/301 (41.20%), Postives = 172/301 (57.14%), Query Frame = 1
Query: 1 GLVIAVKGTVTASGEMLVDDWCPAGIPPP--------------------------VPPSPSKKVGGRHDPLLVSLLVDFVAGYLGGVEDQEGTSARIGRVIVCGDSVAAPSAELLSGSGPSKRLNAEQQRLVASPMKELDTVLALLAAAAPVDVMPGESDPANYTLPQQPLHPCLLRNASRFGALKRVTNPHEAKIGERVFLGSSGQPLLDMARYTTPEAEADKDAKPAC--LRRLEEMLKWRHMAPTAPETLGCYPFVTEDPFVVEECPDIFFAGNQPQFATGILE-----GADGHKVRR 804
GLV+A KG G V+D C AG+P V ++ R D L + LL+D+V G+ G +++ +RIGRVIV GD +A A +L K + ++QQ A P K +D VLA LA+A PVDVMPG DP+N+TLPQQP+HPC+L +ASR+ + K V NP+EA + R+FLG++GQ D+AR T P + A A L +E+ L WRH+APTAP+TL CYPF +DPFV+ P ++FAGNQP FA ++E GA+G + ++
Sbjct: 195 GLVVAAKGRAVG-GRFFVEDVCAAGMPEQEAGPEGXXXXXXXXXXXGGRGREPQYVMLMSGLRLSDRSDLLPLQLLIDYVQGHAGTADEKRRLVSRIGRVIVAGDLLAPFEASILK----EKHMTSKQQEEFALPFKHVDLVLAQLASAVPVDVMPGADDPSNHTLPQQPIHPCILPHASRYASFKTVPNPYEAWLQRRLFLGNAGQIPADLARSTAPPSLPSSPASSAARTLDLMEKTLHWRHLAPTAPDTLACYPFCDDDPFVLPSLPHVYFAGNQPAFAARLVEEGKEGGAEGKEGKK 490 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9035.17227.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig9035.17227.1 >prot_Ecto-sp9_F_contig9035.17227.1 ID=prot_Ecto-sp9_F_contig9035.17227.1|Name=mRNA_Ecto-sp9_F_contig9035.17227.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=271bp GLVIAVKGTVTASGEMLVDDWCPAGIPPPVPPSPSKKVGGRHDPLLVSLLback to top mRNA from alignment at Ecto-sp9_F_contig9035:46..5156+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig9035.17227.1 ID=mRNA_Ecto-sp9_F_contig9035.17227.1|Name=mRNA_Ecto-sp9_F_contig9035.17227.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=5111bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9035:46..5156+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9035:46..5156+ >mRNA_Ecto-sp9_F_contig9035.17227.1 ID=mRNA_Ecto-sp9_F_contig9035.17227.1|Name=mRNA_Ecto-sp9_F_contig9035.17227.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1626bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9035:46..5156+ (Ectocarpus species9 EcSCA_722f female)back to top |