mRNA_Ecto-sp9_F_contig9027.17220.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9027.17220.1
Unique NamemRNA_Ecto-sp9_F_contig9027.17220.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9027.17220.1 vs.
Match: Exonuclease (I Exo1 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZG7_ECTSI)

HSP 1 Score: 171 bits (434), Expect = 1.750e-48
Identity = 87/97 (89.69%), Postives = 90/97 (92.78%), Query Frame = 1 
Query:    1 HFSGAPTSEDITRHTGTLELSPLASGVARGDVCPLTGREWDPPLGTAQAKGRAGGEDPGRQKKRATPETASSRPPNASSRTSRPRGPQDTNNYREHG 291
            H SGAPT E+ITRHTGTLELSPLAS VARGDVCPLTGREWDPPLGTAQAKG+A GED GRQKKRATPETAS+RPPNASSR SR RGPQDTNNYREHG
Sbjct:  248 HLSGAPTREEITRHTGTLELSPLASRVARGDVCPLTGREWDPPLGTAQAKGQAVGEDAGRQKKRATPETASTRPPNASSRASRARGPQDTNNYREHG 344
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BLAST of mRNA_Ecto-sp9_F_contig9027.17220.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVY6_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 9.280e-46
Identity = 84/97 (86.60%), Postives = 87/97 (89.69%), Query Frame = 1 
Query:    1 HFSGAPTSEDITRHTGTLELSPLASGVARGDVCPLTGREWDPPLGTAQAKGRAGGEDPGRQKKRATPETASSRPPNASSRTSRPRGPQDTNNYREHG 291
            H SGAPTSEDITRHTGTLELSPLASGVARGDVCPLTG EWDPPLGTAQAKG+A GED  R KK+ TPE ASSRPPNASSRTSR RGPQ+TNNYR HG
Sbjct:  561 HLSGAPTSEDITRHTGTLELSPLASGVARGDVCPLTGGEWDPPLGTAQAKGQAAGEDASRPKKKVTPEIASSRPPNASSRTSRARGPQETNNYRAHG 657
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BLAST of mRNA_Ecto-sp9_F_contig9027.17220.1 vs.
Match: Exonuclease (1 n=3 Tax=Ectocarpus TaxID=2879 RepID=D7G0K2_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 1.260e-44
Identity = 83/97 (85.57%), Postives = 86/97 (88.66%), Query Frame = 1 
Query:    1 HFSGAPTSEDITRHTGTLELSPLASGVARGDVCPLTGREWDPPLGTAQAKGRAGGEDPGRQKKRATPETASSRPPNASSRTSRPRGPQDTNNYREHG 291
            H SGAPT E+ITRH GT ELSPLAS VAR D CPLTGREWDPPLGTAQAKG+A GED GRQKKRATPETAS+RPPNASSR SR RGPQDTNNYREHG
Sbjct:  316 HLSGAPTREEITRHAGTSELSPLASRVARRDACPLTGREWDPPLGTAQAKGQAVGEDAGRQKKRATPETASTRPPNASSRASRSRGPQDTNNYREHG 412
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BLAST of mRNA_Ecto-sp9_F_contig9027.17220.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZU5_ECTSI)

HSP 1 Score: 158 bits (400), Expect = 5.670e-44
Identity = 81/97 (83.51%), Postives = 85/97 (87.63%), Query Frame = 1 
Query:    1 HFSGAPTSEDITRHTGTLELSPLASGVARGDVCPLTGREWDPPLGTAQAKGRAGGEDPGRQKKRATPETASSRPPNASSRTSRPRGPQDTNNYREHG 291
            H SGA T E+ITRHTGTLELSPLAS VARGD+C LTGREWDPPLGTAQ KG+A G D GRQKK+ATPETASSRP NASSR SR RGPQDTNNYREHG
Sbjct:  273 HLSGASTREEITRHTGTLELSPLASRVARGDICLLTGREWDPPLGTAQGKGQAAGADAGRQKKKATPETASSRPSNASSRASRARGPQDTNNYREHG 369
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BLAST of mRNA_Ecto-sp9_F_contig9027.17220.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4G5_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 1.470e-26
Identity = 55/74 (74.32%), Postives = 58/74 (78.38%), Query Frame = 3 
Query:    3 FFRRADQRGHHPPYRDIGAIPAGVRRGPGRCLSADRARMGPTAGYSTGEGAGGRRGSWQAEEKGNTRDG*QSPP 224
            F RR DQ G+HPPYRD+GAIPAGV  GPGRCLSADRARMGPTAGYST EGAGGRRG WQAEE+         PP
Sbjct:  274 FVRRPDQGGNHPPYRDVGAIPAGVPCGPGRCLSADRARMGPTAGYSTNEGAGGRRGCWQAEERATLETASTRPP 347
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BLAST of mRNA_Ecto-sp9_F_contig9027.17220.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LMS4_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.270e-11
Identity = 35/45 (77.78%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:  157 AGGEDPGRQKKRATPETASSRPPNASSRTSRPRGPQDTNNYREHG 291
            A GED  R KK+ TPE ASSRPPNASSRTSR RGPQ+TNNYR HG
Sbjct:    3 AAGEDASRPKKKVTPEIASSRPPNASSRTSRARGPQETNNYRAHG 47
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9027.17220.1 vs.
Match: Exonuclease (1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFX7_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 2.010e-8
Identity = 27/44 (61.36%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    1 HFSGAPTSEDITRHTGTLELSPLASGVARGDVCPLTGREWDPPL 132
            HFSGA +S  IT+ TGTLE S +ASG+A G+V P TG+ W PPL
Sbjct:  356 HFSGAASSLAITKDTGTLEFSSVASGIASGEVSPTTGQVWAPPL 399
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9027.17220.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQM4_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 2.580e-8
Identity = 42/110 (38.18%), Postives = 55/110 (50.00%), Query Frame = 1 
Query:    1 HFSGAPTSEDITRHTGTLELSPLASGVARGDVCPLTGREWDPPLGTAQAKGRAGGEDPGRQKKRATPETASSRPP-------------NASSRTSRPRGPQDTNNYREHG 291
            HFS A +S  IT+ TGTLE S +ASG+A G+V P TG+ W PPL   +           ++ +RAT    S  PP                ++ SR     DTNNYR+HG
Sbjct:  133 HFSCAASSLAITKDTGTLEFSSVASGIASGEVSPTTGQVWAPPLLETRIA---------QEFRRATRRAGSQMPPXXXXXXXXXXDQSTGRNKRSRKAVTHDTNNYRKHG 233
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9027.17220.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6L7_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 5.460e-7
Identity = 26/44 (59.09%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:    1 HFSGAPTSEDITRHTGTLELSPLASGVARGDVCPLTGREWDPPL 132
            HFS A +S  IT+ TGTLE S +ASG+A G+V P TG+ W PPL
Sbjct:  133 HFSCAASSLAITKDTGTLEFSYVASGIASGEVSPTTGQVWAPPL 176
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9027.17220.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
Exonuclease1.750e-4889.69I Exo1 n=2 Tax=Ectocarpus siliculosus TaxID=2880 R... [more]
Uncharacterized9.280e-4686.60protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 131... [more]
Exonuclease1.260e-4485.571 n=3 Tax=Ectocarpus TaxID=2879 RepID=D7G0K2_ECTSI[more]
Uncharacterized5.670e-4483.51protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.470e-2674.32protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.270e-1177.78protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Exonuclease2.010e-861.361 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726... [more]
Uncharacterized2.580e-838.18protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized5.460e-759.09protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9027contigEcto-sp9_F_contig9027:3845..4511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score173.3
Seed ortholog evalue5.4e-41
Seed eggNOG ortholog2880.D7G495
KEGG koko:K10746
KEGG Pathwayko03430,map03430
EggNOG free text desc.5'-3' exodeoxyribonuclease activity
EggNOG OGsCOG0258@1,KOG2518@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size291
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930968.2356114-CDS-Ecto-sp9_F_contig9027:3844..38901622930968.2356114-CDS-Ecto-sp9_F_contig9027:3844..3890Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9027 3845..3890 +
1692278972.2798924-CDS-Ecto-sp9_F_contig9027:3844..38901692278972.2798924-CDS-Ecto-sp9_F_contig9027:3844..3890Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9027 3845..3890 +
1622930968.2500987-CDS-Ecto-sp9_F_contig9027:4266..45111622930968.2500987-CDS-Ecto-sp9_F_contig9027:4266..4511Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9027 4267..4511 +
1692278972.2914078-CDS-Ecto-sp9_F_contig9027:4266..45111692278972.2914078-CDS-Ecto-sp9_F_contig9027:4266..4511Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9027 4267..4511 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9027.17220.1prot_Ecto-sp9_F_contig9027.17220.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9027 3845..4511 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9027.17220.1

>prot_Ecto-sp9_F_contig9027.17220.1 ID=prot_Ecto-sp9_F_contig9027.17220.1|Name=mRNA_Ecto-sp9_F_contig9027.17220.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=97bp
HFSGAPTSEDITRHTGTLELSPLASGVARGDVCPLTGREWDPPLGTAQAK
GRAGGEDPGRQKKRATPETASSRPPNASSRTSRPRGPQDTNNYREHG
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mRNA from alignment at Ecto-sp9_F_contig9027:3845..4511+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9027.17220.1 ID=mRNA_Ecto-sp9_F_contig9027.17220.1|Name=mRNA_Ecto-sp9_F_contig9027.17220.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=667bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9027:3845..4511+ (Ectocarpus species9 EcSCA_722f female)
CATTTTTCCGGCGCGCCGACCAGCGAGGACATCACCCGCCATACAGGTCA
GTGTTAGTGGCGTGTGTAGGGATGCTCCTCATACATAAGACCAGCTTTTG
AATGGTGTTTCCCGACGTCACCCTACTTGTAGTCGGGCGCCAGCAGTGAG
ACCTTACATCTGCGTGCAGCAAGGAGGGCTGCTGTACCTTCAAACATTCT
GCAGCCTTTCTACAAGTAGTCTGTAGTAAGTAGTAGATTTGTTGTAAAAC
TGAGTTCAACCTCAACCGGGCTTTGCTCGTCCCGTGATTACACCGCTCCC
GCTGTACTGCATATTGTCTAAACCTGCTGTACTGATGTATATGCAGATAC
ATTTAGTGACGGCGTTGCATATACTATCGCCTGAACTGACTTCATTGTCA
TGCTCGCATCCCGCACGTACAGGGACATTGGAGCTATCCCCGCTGGCGTC
CGGCGTGGCCCGGGGAGATGTCTGTCCGCTGACCGGGCGCGAATGGGACC
CACCGCTGGGTACAGCACAGGCGAAGGGGCGGGCGGGAGGCGAGGATCCT
GGCAGGCAGAAGAAAAGGGCAACACCCGAGACGGCTAGCAGTCGCCCCCC
GAATGCTAGTAGCAGGACGTCTCGCCCTCGAGGTCCTCAAGACACAAACA
ACTACCGCGAGCACGGC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9027:3845..4511+

>mRNA_Ecto-sp9_F_contig9027.17220.1 ID=mRNA_Ecto-sp9_F_contig9027.17220.1|Name=mRNA_Ecto-sp9_F_contig9027.17220.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=582bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9027:3845..4511+ (Ectocarpus species9 EcSCA_722f female)
CATTTTTCCGGCGCGCCGACCAGCGAGGACATCACCCGCCATACAGCATT
TTTCCGGCGCGCCGACCAGCGAGGACATCACCCGCCATACAGGGACATTG
GAGCTATCCCCGCTGGCGTCCGGCGTGGCCCGGGGAGATGTCTGTCCGCT
GACCGGGCGCGAATGGGACCCACCGCTGGGTACAGCACAGGCGAAGGGGC
GGGCGGGAGGCGAGGATCCTGGCAGGCAGAAGAAAAGGGCAACACCCGAG
ACGGCTAGCAGTCGCCCCCCGAATGCTAGTAGCAGGACGTCTCGCCCTCG
AGGTCCTCAAGACACAAACAACTACCGCGAGCACGGCGGACATTGGAGCT
ATCCCCGCTGGCGTCCGGCGTGGCCCGGGGAGATGTCTGTCCGCTGACCG
GGCGCGAATGGGACCCACCGCTGGGTACAGCACAGGCGAAGGGGCGGGCG
GGAGGCGAGGATCCTGGCAGGCAGAAGAAAAGGGCAACACCCGAGACGGC
TAGCAGTCGCCCCCCGAATGCTAGTAGCAGGACGTCTCGCCCTCGAGGTC
CTCAAGACACAAACAACTACCGCGAGCACGGC
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