mRNA_Ecto-sp9_F_contig901.17202.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig901.17202.1
Unique NamemRNA_Ecto-sp9_F_contig901.17202.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig901.17202.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLR2_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 2.690e-37
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 1 
Query:    1 KGNVDAGGILKGLGDKKIPQEKRYSAGLVSLIRCCLVVDPARRPTIGQVLKLCEELKVKGSLPDWPGLH 207
            KGNVDAG ILKGLGDKKIPQEKRYSAGLVSLIRCCLVVDPARRPTIGQVLKLCEELKVKGSLPDWPGL+
Sbjct:  244 KGNVDAGAILKGLGDKKIPQEKRYSAGLVSLIRCCLVVDPARRPTIGQVLKLCEELKVKGSLPDWPGLN 312
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BLAST of mRNA_Ecto-sp9_F_contig901.17202.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEL9_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 1.530e-35
Identity = 65/69 (94.20%), Postives = 66/69 (95.65%), Query Frame = 1 
Query:    1 KGNVDAGGILKGLGDKKIPQEKRYSAGLVSLIRCCLVVDPARRPTIGQVLKLCEELKVKGSLPDWPGLH 207
            KGNVD  GILKGLGDKKIPQE RYSAGLVSLIRCCLVVDPARRPTIGQVLKLCEELKVKGSLPDWPGL+
Sbjct:  227 KGNVDLEGILKGLGDKKIPQEHRYSAGLVSLIRCCLVVDPARRPTIGQVLKLCEELKVKGSLPDWPGLN 295
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig901.17202.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.690e-3797.10protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.530e-3594.20protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig901contigEcto-sp9_F_contig901:5243..6551 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.9
Seed ortholog evalue5.6e-32
Seed eggNOG ortholog2880.D8LLR2
Preferred nameATMRK1
KEGG koko:K04424,ko:K16799
KEGG Pathwayko04010,ko04341,map04010,map04341
KEGG ModuleM00678
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004485,GO:0004672,GO:0004674,GO:0004712,GO:0004713,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0007275,GO:0008150,GO:0008152,GO:0009791,GO:0009987,GO:0010154,GO:0010344,GO:0016020,GO:0016301,GO:0016310,GO:0016421,GO:0016740,GO:0016772,GO:0016773,GO:0016874,GO:0016885,GO:0018108,GO:0018193,GO:0018212,GO:0019538,GO:0022414,GO:0023052,GO:0031974,GO:0032501,GO:0032502,GO:0035556,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0061458,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0071944,GO:0140096,GO:1901564
EggNOG free text desc.clathrin-coated pit assembly
EggNOG OGsCOG0515@1,KOG0192@2759,KOG1989@1,KOG1989@2759
EC2.7.11.25
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03000
Hectar predicted targeting categoryother localisation
Exons3
Model size210
Cds size207
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig901.17202.1prot_Ecto-sp9_F_contig901.17202.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig901 5244..6551 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930965.7048607-CDS-Ecto-sp9_F_contig901:5243..53061622930965.7048607-CDS-Ecto-sp9_F_contig901:5243..5306Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig901 5244..5306 -
1692278971.2209249-CDS-Ecto-sp9_F_contig901:5243..53061692278971.2209249-CDS-Ecto-sp9_F_contig901:5243..5306Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig901 5244..5306 -
1622930965.7260547-CDS-Ecto-sp9_F_contig901:5910..60031622930965.7260547-CDS-Ecto-sp9_F_contig901:5910..6003Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig901 5911..6003 -
1692278971.23635-CDS-Ecto-sp9_F_contig901:5910..60031692278971.23635-CDS-Ecto-sp9_F_contig901:5910..6003Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig901 5911..6003 -
1622930965.7409728-CDS-Ecto-sp9_F_contig901:6500..65511622930965.7409728-CDS-Ecto-sp9_F_contig901:6500..6551Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig901 6501..6551 -
1692278971.246548-CDS-Ecto-sp9_F_contig901:6500..65511692278971.246548-CDS-Ecto-sp9_F_contig901:6500..6551Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig901 6501..6551 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig901.17202.1

>prot_Ecto-sp9_F_contig901.17202.1 ID=prot_Ecto-sp9_F_contig901.17202.1|Name=mRNA_Ecto-sp9_F_contig901.17202.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=69bp
KGNVDAGGILKGLGDKKIPQEKRYSAGLVSLIRCCLVVDPARRPTIGQVL
KLCEELKVKGSLPDWPGLH
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mRNA from alignment at Ecto-sp9_F_contig901:5243..6551-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig901.17202.1 ID=mRNA_Ecto-sp9_F_contig901.17202.1|Name=mRNA_Ecto-sp9_F_contig901.17202.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1309bp|location=Sequence derived from alignment at Ecto-sp9_F_contig901:5243..6551- (Ectocarpus species9 EcSCA_722f female)
AAGGGGAACGTGGACGCGGGGGGCATTCTCAAGGGGCTGGGGGATAAGAA
GGTGGGTGGGTAGGTGGGTGTTGTTGCAGGGCCCCTCTTTGCCCGTGGCG
TGGTGGAAAGCGGTGTACTGATGACAGGTGATTTTTTTTTTTTGTACTGA
TCGTCGGGATGACAAGTGTTGTTGGTGCTGCTGCTGTTTTGCGAGTTCGT
TTGTGGTGGTGGTGTTGACGTTTGCCTGTTTCGTGCGGCCGGTACAATGT
GTGGTGTTGCGTTTGCATGGGGGTAGTTGTAAGTGTCGAGGTCACACACC
ACGCACCGCCTTGGGGGTGCGTCTTGAGTGATCGTCCTCCTCCCTGCAGT
GCTTTCGTTACAAGACACCGTCGTGTTCGTTTCGAGATGTCATCTTGTTC
CAAGATATTGTTTTACTTGGTGGCTTTTTGGTTCCGTTCGCTTCAAGATG
ACTTTTTGTAAAATACTGTAAAACAATATATTTTTGTTTCGTTCTCGACC
ATTACGGTGTGTGTTACGATTTCCGCCTGTGTTTTCTGTTTCTGGCAGAT
ACCCCAGGAGAAGAGGTATTCCGCCGGGCTGGTGTCGCTCATCCGGTGCT
GCCTCGTGGTGGACCCCGCTAGGAGGCCGACGATAGGACAGGTCTGTAAC
CCTGTCGCCGTTATAGCATACTACAAGTGCAGCCGTACCATTCACTATAG
CTTCTTTGTAGCTCATACGATAGGACAGGTCTGTCGCCGTAAAGTACAGC
TGTACGCTACCCCACCAAATCCTTTGTAGCTTCGACAATCGATTGCACAG
GTCTGTTGCTGTCCAACAGCAGTACAGCGGTTTTTGTTCATTACTGCTGT
ACTAGTGTTATTTGCCCGCTACTTTCCGCCGTAGCTGTCAACAAACAATT
GCACATGTCTGTCGCGGTACAGCTGTACACTAATCACTGCCGCACAACTT
CCTTTGCAGCTTCAACAATCGATTGCACAGGTCTGTCGCTGCTATACAGC
AGTATTTGTTAAGTACAAACAAGAAATATAACAATACCACGGCCGAAGCT
GTCAACCAACAAGAGGATGTTTAAACACATTTACGGGGTTAAGCATTATA
GCTGCTGGCTGCAGGTACAACTCCCTTTCCACTCTATTCGACGAAAGCAT
CCCCTCGCCGGTGCCCCCGCGTATTCAGAAGACTCACCTTTTTATCGCTT
TTCTCTAGTGTGCCCCTCACCCTGACTCTGACGAACACCTCCCAGGTGTT
GAAGCTCTGCGAGGAGCTCAAGGTCAAGGGCTCCCTGCCGGACTGGCCAG
GGCTCCACA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig901:5243..6551-

>mRNA_Ecto-sp9_F_contig901.17202.1 ID=mRNA_Ecto-sp9_F_contig901.17202.1|Name=mRNA_Ecto-sp9_F_contig901.17202.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=414bp|location=Sequence derived from alignment at Ecto-sp9_F_contig901:5243..6551- (Ectocarpus species9 EcSCA_722f female)
AAGGGGAACGTGGACGCGGGGGGCATTCTCAAGGGGCTGGGGGATAAGAA
GAAGGGGAACGTGGACGCGGGGGGCATTCTCAAGGGGCTGGGGGATAAGA
AGATACCCCAGGAGAAGAGGTATTCCGCCGGGCTGGTGTCGCTCATCCGG
TGCTGCCTCGTGGTGGACCCCGCTAGGAGGCCGACGATAGGACAGATACC
CCAGGAGAAGAGGTATTCCGCCGGGCTGGTGTCGCTCATCCGGTGCTGCC
TCGTGGTGGACCCCGCTAGGAGGCCGACGATAGGACAGGTGTTGAAGCTC
TGCGAGGAGCTCAAGGTCAAGGGCTCCCTGCCGGACTGGCCAGGGCTCCA
CGTGTTGAAGCTCTGCGAGGAGCTCAAGGTCAAGGGCTCCCTGCCGGACT
GGCCAGGGCTCCAC
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