mRNA_Ecto-sp9_F_contig8973.17169.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig8973.17169.1 vs.
Match: EsV-1-170 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP47_ECTSI) HSP 1 Score: 100 bits (248), Expect = 1.370e-22 Identity = 62/108 (57.41%), Postives = 70/108 (64.81%), Query Frame = 1
Query: 1 WMQRRRKLTTNSLFYTLTKCCIQERGVAHVLRFE---HAKQVFVSGDS----GAFKEVKDTCTAG-HMNHVFLQ*VEDPKVRVHRSFLNAGYKARTNDDQPVPPRPAK 300
WMQRRRKL T+SLFYTLTKCCIQERGVAH+LR E ++ Q S GAFKEV G H VF V+ KV VH SF+ AGY RTN+ +PVP RPAK
Sbjct: 20 WMQRRRKLDTSSLFYTLTKCCIQERGVAHILRMENEQYSSQAIHSARKKLPPGAFKEVNRFLQRGPHEPRVFA--VDGSKVHVHPSFIGAGYMTRTNN-KPVP-RPAK 123
BLAST of mRNA_Ecto-sp9_F_contig8973.17169.1 vs.
Match: EsV-1-155 ((Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP60_ECTSI) HSP 1 Score: 99.8 bits (247), Expect = 2.030e-22 Identity = 62/108 (57.41%), Postives = 70/108 (64.81%), Query Frame = 1
Query: 1 WMQRRRKLTTNSLFYTLTKCCIQERGVAHVLRFE---HAKQVFVSGDS----GAFKEVKDTCTAG-HMNHVFLQ*VEDPKVRVHRSFLNAGYKARTNDDQPVPPRPAK 300
WMQRRRKL T+SLFYTLTKCCIQERGVAH+LR E ++ Q S GAFKEV G H VF V+ KV VH SF+ AGY RTN+ +PVP RPAK
Sbjct: 20 WMQRRRKLDTSSLFYTLTKCCIQERGVAHILRMENEQYSSQAIHSARKKLPPGAFKEVNRFLQRGPHEPRVFA--VDGSKVHVHPSFIGAGYVTRTNN-KPVP-RPAK 123
BLAST of mRNA_Ecto-sp9_F_contig8973.17169.1 vs.
Match: EsV-1-170 (n=2 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNB6_ESV1K) HSP 1 Score: 96.3 bits (238), Expect = 4.630e-21 Identity = 60/108 (55.56%), Postives = 69/108 (63.89%), Query Frame = 1
Query: 1 WMQRRRKLTTNSLFYTLTKCCIQERGVAHVLRFE---HAKQVFVSGDS----GAFKEVKDTCTAG-HMNHVFLQ*VEDPKVRVHRSFLNAGYKARTNDDQPVPPRPAK 300
WMQRRRK+ T+SLFYTLT+CC+Q RGV HVL+ E ++ Q S GAFKEV G H VF V+ KV VH SF+NAGYK RTND QPV RPAK
Sbjct: 20 WMQRRRKMDTSSLFYTLTRCCVQGRGVNHVLKMEDEAYSSQAVHSARKKLPMGAFKEVNRFLHRGPHEPRVFA--VDGSKVHVHPSFINAGYKTRTND-QPVS-RPAK 123
BLAST of mRNA_Ecto-sp9_F_contig8973.17169.1 vs.
Match: DDE_Tnp_1 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA56_9PHAE) HSP 1 Score: 94.0 bits (232), Expect = 7.550e-20 Identity = 56/108 (51.85%), Postives = 71/108 (65.74%), Query Frame = 1
Query: 1 WMQRRRKLTTNSLFYTLTKCCIQERGVAHVLRFE----HAKQVFVSGDS---GAFKEVKDTCTAG-HMNHVFLQ*VEDPKVRVHRSFLNAGYKARTNDDQPVPPRPAK 300
WMQRRRKL T+S+FYT+TKCC +ERGV+HVL+ E ++ V ++ GAFKEV G H +F ++ KV VH SF+ AGYK RTND +PVP RPAK
Sbjct: 20 WMQRRRKLDTSSVFYTITKCCTRERGVSHVLKMEAEEYSSQAVHLARKKLPIGAFKEVNRFLHRGPHEPRIFA--IDGSKVHVHPSFIKAGYKTRTND-KPVP-RPAK 123
BLAST of mRNA_Ecto-sp9_F_contig8973.17169.1 vs.
Match: DDE_Tnp_1 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K772_9PHAE) HSP 1 Score: 93.2 bits (230), Expect = 1.400e-19 Identity = 57/108 (52.78%), Postives = 70/108 (64.81%), Query Frame = 1
Query: 1 WMQRRRKLTTNSLFYTLTKCCIQERGVAHVLRFE---HAKQVFVSGDS----GAFKEVKDTCTAG-HMNHVFLQ*VEDPKVRVHRSFLNAGYKARTNDDQPVPPRPAK 300
W+QRRRK+ T+SLF+TLT+CC+Q RGV+HVL+ E ++ Q S GAFKEV G H VF V+ KV VH SF+N+GYK RTND QPV RPAK
Sbjct: 35 WIQRRRKMDTSSLFFTLTRCCVQGRGVSHVLKMEDEAYSSQAVHSARKKLPIGAFKEVNRFLHRGPHEPRVFA--VDGSKVHVHPSFINSGYKTRTND-QPVS-RPAK 138
BLAST of mRNA_Ecto-sp9_F_contig8973.17169.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0K9_9PHAE) HSP 1 Score: 79.7 bits (195), Expect = 1.020e-15 Identity = 43/78 (55.13%), Postives = 50/78 (64.10%), Query Frame = 3
Query: 156 RYLHSGPHEPRLFAVSGGSEGTCSSILPQRWIQGKNER---RPAGTTTSGKRPLVMLSSMVDVKSNACVDFELTKHFN 380
R+LH GPHEPR+FAV G S + + N++ RPA K PLVMLSSMVDVK+ ACVDFELTKHFN
Sbjct: 28 RFLHQGPHEPRVFAVDGSKVHVHPSFIGAGYKTRTNDKPVPRPA------KSPLVMLSSMVDVKTKACVDFELTKHFN 99
BLAST of mRNA_Ecto-sp9_F_contig8973.17169.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4T1_9PHAE) HSP 1 Score: 54.7 bits (130), Expect = 3.680e-6 Identity = 31/56 (55.36%), Postives = 39/56 (69.64%), Query Frame = 1
Query: 4 MQRRRKLTTNSLFYTLTKCCIQERGVAHVLRFE---HAKQVFVSG----DSGAFKE 150
+QRRRK+ T+SLFYTLTK CIQERGV H+LR + ++ Q S +GAFKE
Sbjct: 175 IQRRRKIDTSSLFYTLTKRCIQERGVGHILRTDDEQYSSQAVHSARKKLPAGAFKE 230 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8973.17169.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig8973.17169.1 >prot_Ecto-sp9_F_contig8973.17169.1 ID=prot_Ecto-sp9_F_contig8973.17169.1|Name=mRNA_Ecto-sp9_F_contig8973.17169.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=66bp MQRRRKLTTNSLFYTLTKCCIQERGVAHVLRFEHAKQVFVSGDSGAFKEVback to top mRNA from alignment at Ecto-sp9_F_contig8973:5299..5678+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig8973.17169.1 ID=mRNA_Ecto-sp9_F_contig8973.17169.1|Name=mRNA_Ecto-sp9_F_contig8973.17169.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=380bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8973:5299..5678+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8973:5299..5678+ >mRNA_Ecto-sp9_F_contig8973.17169.1 ID=mRNA_Ecto-sp9_F_contig8973.17169.1|Name=mRNA_Ecto-sp9_F_contig8973.17169.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=396bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8973:5299..5678+ (Ectocarpus species9 EcSCA_722f female)back to top |