mRNA_Ecto-sp9_F_contig8973.17168.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8973.17168.1
Unique NamemRNA_Ecto-sp9_F_contig8973.17168.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8973.17168.1 vs.
Match: hypothetical (protein n=1 Tax=Ectocarpus siliculosus virus 1 TaxID=37665 RepID=UPI0000161E5A)

HSP 1 Score: 279 bits (714), Expect = 1.560e-89
Identity = 208/341 (61.00%), Postives = 221/341 (64.81%), Query Frame = 1 
Query:    1 MSDGCGEDLLDELLLLDSG-----------SFDIPEAFGTTAEDDTAATPGPSFDDGVFDINNASGLFDXXXXXXXXXXAMPRKPSSLAAAG-SGAXXXXXXXXXXXXX--------APGAATASGEDEA----RGXXXXXXXXXXXXXXXXXXXXXXXXXXXXDNQTSSSSSSSHGFIDDDTEKDVVHTSDGNMSASDGGWCSIVGSNDGEGPDTSESSYAPSPDSSSTRPDDV----SEMSIVSCQEQEDDEDPCIDKPIGLMLAMPDPDDAEGDFICSKVRQRYEKAGHTPGKESEVFEVVFKDGSKTEYGREEVLLYKQTYDENEGERGCFEFFFKV 939
            M DGC +DLLD  L +DSG           + D PEAFGTTAED   A PGP  D  VFD ++ SG             AM  +PSSLA  G SGA XXXXXXXXXXXX        A    TASGE +A    +                     XXXXXXXX       S +S GFIDDDTEKDVVHTSDGNM  SDG W SI+GS DGEGPD S SS  PS DS            SEMSIVSCQEQEDDEDPCI+KPIGLMLA PDPDDA+GDFICSKVRQRY KAGHTPGKESEVFEVVFKDGSK EYGREEVLLYK+ YDENEGERGCFEFFFKV
Sbjct:    1 MDDGC-KDLLDLFLDIDSGCDFGLASQSLGNLDTPEAFGTTAED--TAMPGPFSD--VFDFDDMSGS------GHDGGGAMSHQPSSLAVTGGSGAVXXXXXXXXXXXXXXXXXXXKASDEVTASGEADAAHWGQPVAEKPSSLVAAGFGAAGGGAXXXXXXXXXXXXXXXSQASCGFIDDDTEKDVVHTSDGNMGGSDGNWSSIIGSIDGEGPDASASSCIPSSDSXXXXXXXXXXXXSEMSIVSCQEQEDDEDPCIEKPIGLMLATPDPDDADGDFICSKVRQRYVKAGHTPGKESEVFEVVFKDGSKKEYGREEVLLYKRIYDENEGERGCFEFFFKV 330
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BLAST of mRNA_Ecto-sp9_F_contig8973.17168.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSF5_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 1.870e-9
Identity = 41/58 (70.69%), Postives = 46/58 (79.31%), Query Frame = 2 
Query:  338 VVVVNGSLKSLRRSWRQDWVRLVVVPTVITKLPLLLLLLTASSMTTRKKTSFTPAMET 511
            +VVV GSLKSLRR  RQDWV L VVPTV T+L LLL+   AS+MTT KK+SFTPA ET
Sbjct:  490 LVVVKGSLKSLRRFRRQDWVLLAVVPTVTTELHLLLM---ASAMTTLKKSSFTPATET 544
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8973.17168.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
hypothetical1.560e-8961.00protein n=1 Tax=Ectocarpus siliculosus virus 1 Tax... [more]
Uncharacterized1.870e-970.69protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8973contigEcto-sp9_F_contig8973:4270..5211 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size942
Cds size942
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930957.5681305-CDS-Ecto-sp9_F_contig8973:4269..52111622930957.5681305-CDS-Ecto-sp9_F_contig8973:4269..5211Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8973 4270..5211 -
1692278966.8216782-CDS-Ecto-sp9_F_contig8973:4269..52111692278966.8216782-CDS-Ecto-sp9_F_contig8973:4269..5211Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8973 4270..5211 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8973.17168.1prot_Ecto-sp9_F_contig8973.17168.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8973 4270..5211 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8973.17168.1

>prot_Ecto-sp9_F_contig8973.17168.1 ID=prot_Ecto-sp9_F_contig8973.17168.1|Name=mRNA_Ecto-sp9_F_contig8973.17168.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=314bp
MSDGCGEDLLDELLLLDSGSFDIPEAFGTTAEDDTAATPGPSFDDGVFDI
NNASGLFDDDDDDGGGGGAMPRKPSSLAAAGSGAAGSGAAGSSGAAAAPG
AATASGEDEARGGGGGQRVAEKPSSLVASGLGAAGGGANGDNQTSSSSSS
SHGFIDDDTEKDVVHTSDGNMSASDGGWCSIVGSNDGEGPDTSESSYAPS
PDSSSTRPDDVSEMSIVSCQEQEDDEDPCIDKPIGLMLAMPDPDDAEGDF
ICSKVRQRYEKAGHTPGKESEVFEVVFKDGSKTEYGREEVLLYKQTYDEN
EGERGCFEFFFKV*
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mRNA from alignment at Ecto-sp9_F_contig8973:4270..5211-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8973.17168.1 ID=mRNA_Ecto-sp9_F_contig8973.17168.1|Name=mRNA_Ecto-sp9_F_contig8973.17168.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=942bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8973:4270..5211- (Ectocarpus species9 EcSCA_722f female)
ATGAGCGACGGGTGTGGAGAAGATCTTCTCGATGAACTCCTCCTATTGGA
TAGTGGCTCTTTTGACATACCCGAAGCCTTCGGAACGACTGCCGAGGACG
ACACTGCTGCTACCCCTGGTCCTTCGTTTGATGATGGTGTGTTCGACATC
AATAATGCGTCGGGATTATTTGATGATGATGATGATGATGGTGGTGGTGG
TGGCGCGATGCCGCGCAAGCCCTCGTCCCTCGCGGCGGCAGGATCTGGTG
CGGCAGGATCTGGTGCGGCGGGGTCATCGGGTGCAGCGGCAGCACCCGGT
GCGGCAACAGCATCCGGTGAGGATGAGGCTCGTGGTGGTGGTGGTGGTCA
ACGGGTCGCTGAAAAGCCTTCGTCGCTCGTGGCGTCAGGACTGGGTGCGG
CTGGTGGTGGTGCCAACGGTGATAACCAAACTTCCTCTTCTTCTTCTTCT
TCTCACGGCTTCATCGATGACGACACGGAAAAAGACGTCGTTCACACCAG
CGATGGAAACATGAGTGCTTCCGACGGCGGCTGGTGCTCCATTGTTGGTA
GCAACGATGGGGAGGGGCCCGACACGTCCGAATCGAGTTACGCCCCATCA
CCTGATTCAAGCTCAACCCGCCCGGACGACGTGTCGGAGATGTCCATCGT
TTCCTGCCAGGAACAAGAAGATGACGAGGACCCGTGCATAGACAAACCGA
TTGGGTTGATGTTGGCGATGCCAGACCCAGATGATGCCGAGGGCGATTTT
ATCTGTAGCAAAGTCAGGCAAAGGTATGAGAAGGCAGGCCACACGCCTGG
TAAAGAAAGTGAAGTATTCGAGGTCGTTTTCAAAGACGGATCTAAGACGG
AGTATGGTCGCGAAGAAGTCTTGCTGTATAAGCAAACCTATGATGAGAAT
GAGGGAGAAAGGGGCTGCTTCGAGTTTTTTTTCAAGGTTTAA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8973:4270..5211-

>mRNA_Ecto-sp9_F_contig8973.17168.1 ID=mRNA_Ecto-sp9_F_contig8973.17168.1|Name=mRNA_Ecto-sp9_F_contig8973.17168.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1884bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8973:4270..5211- (Ectocarpus species9 EcSCA_722f female)
ATGAGCGACGGGTGTGGAGAAGATCTTCTCGATGAACTCCTCCTATTGGA
TAGTGGCTCTTTTGACATACCCGAAGCCTTCGGAACGACTGCCGAGGACG
ACACTGCTGCTACCCCTGGTCCTTCGTTTGATGATGGTGTGTTCGACATC
AATAATGCGTCGGGATTATTTGATGATGATGATGATGATGGTGGTGGTGG
TGGCGCGATGCCGCGCAAGCCCTCGTCCCTCGCGGCGGCAGGATCTGGTG
CGGCAGGATCTGGTGCGGCGGGGTCATCGGGTGCAGCGGCAGCACCCGGT
GCGGCAACAGCATCCGGTGAGGATGAGGCTCGTGGTGGTGGTGGTGGTCA
ACGGGTCGCTGAAAAGCCTTCGTCGCTCGTGGCGTCAGGACTGGGTGCGG
CTGGTGGTGGTGCCAACGGTGATAACCAAACTTCCTCTTCTTCTTCTTCT
TCTCACGGCTTCATCGATGACGACACGGAAAAAGACGTCGTTCACACCAG
CGATGGAAACATGAGTGCTTCCGACGGCGGCTGGTGCTCCATTGTTGGTA
GCAACGATGGGGAGGGGCCCGACACGTCCGAATCGAGTTACGCCCCATCA
CCTGATTCAAGCTCAACCCGCCCGGACGACGTGTCGGAGATGTCCATCGT
TTCCTGCCAGGAACAAGAAGATGACGAGGACCCGTGCATAGACAAACCGA
TTGGGTTGATGTTGGCGATGCCAGACCCAGATGATGCCGAGGGCGATTTT
ATCTGTAGCAAAGTCAGGCAAAGGTATGAGAAGGCAGGCCACACGCCTGG
TAAAGAAAGTGAAGTATTCGAGGTCGTTTTCAAAGACGGATCTAAGACGG
AGTATGGTCGCGAAGAAGTCTTGCTGTATAAGCAAACCTATGATGAGAAT
GAGGGAGAAAGGGGCTGCTTCGAGTTTTTTTTCAAGGTTTAAATGAGCGA
CGGGTGTGGAGAAGATCTTCTCGATGAACTCCTCCTATTGGATAGTGGCT
CTTTTGACATACCCGAAGCCTTCGGAACGACTGCCGAGGACGACACTGCT
GCTACCCCTGGTCCTTCGTTTGATGATGGTGTGTTCGACATCAATAATGC
GTCGGGATTATTTGATGATGATGATGATGATGGTGGTGGTGGTGGCGCGA
TGCCGCGCAAGCCCTCGTCCCTCGCGGCGGCAGGATCTGGTGCGGCAGGA
TCTGGTGCGGCGGGGTCATCGGGTGCAGCGGCAGCACCCGGTGCGGCAAC
AGCATCCGGTGAGGATGAGGCTCGTGGTGGTGGTGGTGGTCAACGGGTCG
CTGAAAAGCCTTCGTCGCTCGTGGCGTCAGGACTGGGTGCGGCTGGTGGT
GGTGCCAACGGTGATAACCAAACTTCCTCTTCTTCTTCTTCTTCTCACGG
CTTCATCGATGACGACACGGAAAAAGACGTCGTTCACACCAGCGATGGAA
ACATGAGTGCTTCCGACGGCGGCTGGTGCTCCATTGTTGGTAGCAACGAT
GGGGAGGGGCCCGACACGTCCGAATCGAGTTACGCCCCATCACCTGATTC
AAGCTCAACCCGCCCGGACGACGTGTCGGAGATGTCCATCGTTTCCTGCC
AGGAACAAGAAGATGACGAGGACCCGTGCATAGACAAACCGATTGGGTTG
ATGTTGGCGATGCCAGACCCAGATGATGCCGAGGGCGATTTTATCTGTAG
CAAAGTCAGGCAAAGGTATGAGAAGGCAGGCCACACGCCTGGTAAAGAAA
GTGAAGTATTCGAGGTCGTTTTCAAAGACGGATCTAAGACGGAGTATGGT
CGCGAAGAAGTCTTGCTGTATAAGCAAACCTATGATGAGAATGAGGGAGA
AAGGGGCTGCTTCGAGTTTTTTTTCAAGGTTTAA
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