mRNA_Ecto-sp9_F_contig8973.17167.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8973.17167.1
Unique NamemRNA_Ecto-sp9_F_contig8973.17167.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8973.17167.1 vs.
Match: EsV-1-218 (n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN72_ESV1K)

HSP 1 Score: 322 bits (825), Expect = 1.780e-107
Identity = 224/287 (78.05%), Postives = 233/287 (81.18%), Query Frame = 1 
Query:    1 MTLTCKKHKKCYLRKDSKKCLTPNAWVIFLRTNKNVFKSIGEASMNYRENFKPVLENLIKAGSKDASAKQKKALFHKALCEYFYQQMKASGKNTTSNKKKVSSGVSKVLNKNSIPKTLKIMGAKHSAAALAAKEQAMKKADANVAAKEKIAEDERRKAKDIIRRAVEAAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAIKRMKITSQAVTAAKDTAAKVAKRKIPRALAALDTSLIVSGVGRKRRKR 861
            MTLTCK HKKCY RKDSKKCLTPNAWV+FLRTNKNVF S GEAS  YR+ FKPVLENLI+AGSKDASAKQKKALFHKA+CEYFY QMKASGKNT  NKKKVSSGVSKVL KNSIPKTLKIMGAKH AAALAAKEQAMKKADA+VAAKEKIAE ERRKAKDIIRRA+EAAAR          XXXXXXXXXXXXXXXXXXXXXXXXXX                              AIK+MKITSQAVT+AKDTA KVAKRKIPRALAALDTSLI+SGVGRKRRKR
Sbjct:    1 MTLTCKTHKKCYTRKDSKKCLTPNAWVVFLRTNKNVFTSRGEASETYRKKFKPVLENLIEAGSKDASAKQKKALFHKAVCEYFYAQMKASGKNTAVNKKKVSSGVSKVLEKNSIPKTLKIMGAKHVAAALAAKEQAMKKADASVAAKEKIAEAERRKAKDIIRRAIEAAARARLLKKEAASXXXXXXXXXXXXXXXXXXXXXXXXXXKKTAFNKAKTKADTLQNSAE---------KAIKKMKITSQAVTSAKDTADKVAKRKIPRALAALDTSLIISGVGRKRRKR 278
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BLAST of mRNA_Ecto-sp9_F_contig8973.17167.1 vs.
Match: EsV-1-218 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP36_ECTSI)

HSP 1 Score: 251 bits (642), Expect = 7.460e-80
Identity = 163/287 (56.79%), Postives = 177/287 (61.67%), Query Frame = 1 
Query:    1 MTLTCKKHKKCYLRKDSKKCLTPNAWVIFLRTNKNVFKSIGEASMNYRENFKPVLENLIKAGSKDASAKQKKALFHKALCEYFYQQMKASGKNTTSNKKKVSSGVSKVLNKNSIPKTLKIMGAKHSAAALAAKEQAMKKADANVAAKEKIAEDERRKAKDIIRRAVEAAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAIKRMKITSQAVTAAKDTAAKVAKRKIPRALAALDTSLIVSGVGRKRRKR 861
            M LTCKKHK CY+RKD KKCLTPNAWV+FLRTNKNVF SI EAS++Y +NFKPVLENLIK GSKDASAKQKKALFHKA+CEYFY QMKASGKNT SNKKKVSS VSKVL +N IP TLKIMGA H+AAALAAKEQAMK                   A  II+RAVEAAAR                                                                 +AIKRMK T +AVT AKD A KVAKRK+PRALA LDT L  +GVGRKR +R
Sbjct:   16 MALTCKKHKNCYIRKDRKKCLTPNAWVVFLRTNKNVFTSIEEASVDYHKNFKPVLENLIKVGSKDASAKQKKALFHKAICEYFYHQMKASGKNTASNKKKVSSSVSKVLEQNGIPNTLKIMGATHTAAALAAKEQAMKXXXXXXXXXXXXXXXXXXXAAVIIKRAVEAAARARRLKKEADSAKTRKTASNRAKRRADTLNDSAK--------------------------------DAIKRMKKTDKAVTEAKDKANKVAKRKVPRALAGLDTKLKDTGVGRKRTRR 270
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8973.17167.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
EsV-1-2181.780e-10778.05n=1 Tax=Ectocarpus siliculosus virus 1 (isolate Ne... [more]
EsV-1-2187.460e-8056.79n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8973contigEcto-sp9_F_contig8973:3375..4241 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-218
Ec32 orthologEc-06_006750.1
Exons1
Model size867
Cds size867
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930957.404343-CDS-Ecto-sp9_F_contig8973:3374..42411622930957.404343-CDS-Ecto-sp9_F_contig8973:3374..4241Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8973 3375..4241 +
1692278966.774602-CDS-Ecto-sp9_F_contig8973:3374..42411692278966.774602-CDS-Ecto-sp9_F_contig8973:3374..4241Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8973 3375..4241 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8973.17167.1prot_Ecto-sp9_F_contig8973.17167.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8973 3375..4241 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8973.17167.1

>prot_Ecto-sp9_F_contig8973.17167.1 ID=prot_Ecto-sp9_F_contig8973.17167.1|Name=mRNA_Ecto-sp9_F_contig8973.17167.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=289bp
MTLTCKKHKKCYLRKDSKKCLTPNAWVIFLRTNKNVFKSIGEASMNYREN
FKPVLENLIKAGSKDASAKQKKALFHKALCEYFYQQMKASGKNTTSNKKK
VSSGVSKVLNKNSIPKTLKIMGAKHSAAALAAKEQAMKKADANVAAKEKI
AEDERRKAKDIIRRAVEAAARARLLEKEAVSAKTRASKATSVTRNSRSSS
TRTTTRAQSAKATASKKKTASNSAKRKADTLNDSANNAIKRMKITSQAVT
AAKDTAAKVAKRKIPRALAALDTSLIVSGVGRKRRKRG*
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mRNA from alignment at Ecto-sp9_F_contig8973:3375..4241+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8973.17167.1 ID=mRNA_Ecto-sp9_F_contig8973.17167.1|Name=mRNA_Ecto-sp9_F_contig8973.17167.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=867bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8973:3375..4241+ (Ectocarpus species9 EcSCA_722f female)
ATGACACTGACGTGCAAAAAGCACAAAAAGTGCTACCTCAGGAAGGACAG
CAAAAAGTGCCTCACGCCGAACGCATGGGTCATCTTCCTTCGAACCAACA
AAAACGTGTTCAAATCCATCGGTGAGGCTTCCATGAATTACCGTGAAAAT
TTCAAACCGGTTCTTGAAAACTTGATCAAGGCAGGATCCAAGGACGCAAG
TGCAAAACAAAAAAAAGCTCTTTTCCACAAAGCTTTGTGCGAGTACTTCT
ACCAACAAATGAAAGCTTCGGGCAAGAACACTACAAGCAACAAGAAAAAA
GTGAGCAGCGGCGTGTCCAAAGTCCTAAATAAAAACAGCATACCCAAAAC
ACTCAAGATCATGGGAGCCAAGCATAGCGCAGCGGCCCTGGCTGCAAAAG
AACAGGCTATGAAAAAGGCAGACGCCAATGTCGCCGCCAAAGAAAAAATC
GCAGAGGACGAAAGACGCAAAGCAAAAGACATCATAAGGAGAGCAGTTGA
GGCAGCTGCGCGGGCGAGGCTGCTGGAGAAGGAAGCTGTCTCTGCCAAAA
CTAGGGCGTCCAAGGCTACATCCGTAACCAGGAACAGCAGATCGTCTTCC
ACACGTACGACGACCAGGGCTCAATCAGCCAAGGCCACGGCCTCGAAGAA
AAAGACGGCCTCCAATAGCGCCAAGCGGAAGGCTGACACGCTGAATGATA
GCGCCAACAATGCCATCAAGAGGATGAAAATAACGAGTCAAGCCGTCACA
GCGGCCAAAGATACAGCCGCTAAGGTAGCGAAAAGGAAGATACCACGAGC
TTTAGCCGCACTAGATACCAGTCTCATAGTCAGTGGTGTGGGTCGAAAGA
GGAGGAAGAGAGGTTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8973:3375..4241+

>mRNA_Ecto-sp9_F_contig8973.17167.1 ID=mRNA_Ecto-sp9_F_contig8973.17167.1|Name=mRNA_Ecto-sp9_F_contig8973.17167.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1734bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8973:3375..4241+ (Ectocarpus species9 EcSCA_722f female)
ATGACACTGACGTGCAAAAAGCACAAAAAGTGCTACCTCAGGAAGGACAG
CAAAAAGTGCCTCACGCCGAACGCATGGGTCATCTTCCTTCGAACCAACA
AAAACGTGTTCAAATCCATCGGTGAGGCTTCCATGAATTACCGTGAAAAT
TTCAAACCGGTTCTTGAAAACTTGATCAAGGCAGGATCCAAGGACGCAAG
TGCAAAACAAAAAAAAGCTCTTTTCCACAAAGCTTTGTGCGAGTACTTCT
ACCAACAAATGAAAGCTTCGGGCAAGAACACTACAAGCAACAAGAAAAAA
GTGAGCAGCGGCGTGTCCAAAGTCCTAAATAAAAACAGCATACCCAAAAC
ACTCAAGATCATGGGAGCCAAGCATAGCGCAGCGGCCCTGGCTGCAAAAG
AACAGGCTATGAAAAAGGCAGACGCCAATGTCGCCGCCAAAGAAAAAATC
GCAGAGGACGAAAGACGCAAAGCAAAAGACATCATAAGGAGAGCAGTTGA
GGCAGCTGCGCGGGCGAGGCTGCTGGAGAAGGAAGCTGTCTCTGCCAAAA
CTAGGGCGTCCAAGGCTACATCCGTAACCAGGAACAGCAGATCGTCTTCC
ACACGTACGACGACCAGGGCTCAATCAGCCAAGGCCACGGCCTCGAAGAA
AAAGACGGCCTCCAATAGCGCCAAGCGGAAGGCTGACACGCTGAATGATA
GCGCCAACAATGCCATCAAGAGGATGAAAATAACGAGTCAAGCCGTCACA
GCGGCCAAAGATACAGCCGCTAAGGTAGCGAAAAGGAAGATACCACGAGC
TTTAGCCGCACTAGATACCAGTCTCATAGTCAGTGGTGTGGGTCGAAAGA
GGAGGAAGAGAGGTTGAATGACACTGACGTGCAAAAAGCACAAAAAGTGC
TACCTCAGGAAGGACAGCAAAAAGTGCCTCACGCCGAACGCATGGGTCAT
CTTCCTTCGAACCAACAAAAACGTGTTCAAATCCATCGGTGAGGCTTCCA
TGAATTACCGTGAAAATTTCAAACCGGTTCTTGAAAACTTGATCAAGGCA
GGATCCAAGGACGCAAGTGCAAAACAAAAAAAAGCTCTTTTCCACAAAGC
TTTGTGCGAGTACTTCTACCAACAAATGAAAGCTTCGGGCAAGAACACTA
CAAGCAACAAGAAAAAAGTGAGCAGCGGCGTGTCCAAAGTCCTAAATAAA
AACAGCATACCCAAAACACTCAAGATCATGGGAGCCAAGCATAGCGCAGC
GGCCCTGGCTGCAAAAGAACAGGCTATGAAAAAGGCAGACGCCAATGTCG
CCGCCAAAGAAAAAATCGCAGAGGACGAAAGACGCAAAGCAAAAGACATC
ATAAGGAGAGCAGTTGAGGCAGCTGCGCGGGCGAGGCTGCTGGAGAAGGA
AGCTGTCTCTGCCAAAACTAGGGCGTCCAAGGCTACATCCGTAACCAGGA
ACAGCAGATCGTCTTCCACACGTACGACGACCAGGGCTCAATCAGCCAAG
GCCACGGCCTCGAAGAAAAAGACGGCCTCCAATAGCGCCAAGCGGAAGGC
TGACACGCTGAATGATAGCGCCAACAATGCCATCAAGAGGATGAAAATAA
CGAGTCAAGCCGTCACAGCGGCCAAAGATACAGCCGCTAAGGTAGCGAAA
AGGAAGATACCACGAGCTTTAGCCGCACTAGATACCAGTCTCATAGTCAG
TGGTGTGGGTCGAAAGAGGAGGAAGAGAGGTTGA
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