mRNA_Ecto-sp9_F_contig8973.17166.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8973.17166.1
Unique NamemRNA_Ecto-sp9_F_contig8973.17166.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8973.17166.1 vs.
Match: EsV-1-217 (n=2 Tax=root TaxID=1 RepID=Q8QN73_ESV1K)

HSP 1 Score: 367 bits (943), Expect = 1.030e-126
Identity = 235/243 (96.71%), Postives = 238/243 (97.94%), Query Frame = 1 
Query:    1 MAMSEATANRKRRAEILKQRRRDGKVKQVMSSTLRNKRAAGAKLKADKLAQRERAQREKREMRAEIKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETMKKDACTDTNLMAIRQAMVAAVPTALEMRGFTSAAFSRRRETMSSTWTSLRKFLVACHKKNFESAKKKKGAKAPRNPSKGSGAPVFKNRAVFLPDIGQVIDEAAYKKATAAAFGRGNVRAPGIPKKRGKSPRIAPIFIGTNV 729
            M +SEATANRKRRAEILKQRRRDGKVKQVMSSTLRNKRAAGAKLKADKLAQRERAQREKREMRAEIKA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXET KKD CTDTNLMAIRQAM+AAVPTALEMRG TSAAFSRRRETMSSTWTSLRK+LVACHKKNFESAKKKKGAKAPRNPSKGSGAPVFKNRAVFLPDIGQVIDEAAYKKATAAAFGRGNVRAPGIPKKRGKSPRIAPIFIGTNV
Sbjct:    1 MTISEATANRKRRAEILKQRRRDGKVKQVMSSTLRNKRAAGAKLKADKLAQRERAQREKREMRAEIKAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETRKKDGCTDTNLMAIRQAMMAAVPTALEMRGLTSAAFSRRRETMSSTWTSLRKYLVACHKKNFESAKKKKGAKAPRNPSKGSGAPVFKNRAVFLPDIGQVIDEAAYKKATAAAFGRGNVRAPGIPKKRGKSPRIAPIFIGTNV 243
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8973.17166.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
EsV-1-2171.030e-12696.71n=2 Tax=root TaxID=1 RepID=Q8QN73_ESV1K[more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8973contigEcto-sp9_F_contig8973:2484..3215 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size732
Cds size732
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930957.5240657-CDS-Ecto-sp9_F_contig8973:2483..32151622930957.5240657-CDS-Ecto-sp9_F_contig8973:2483..3215Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8973 2484..3215 +
1692278966.8120809-CDS-Ecto-sp9_F_contig8973:2483..32151692278966.8120809-CDS-Ecto-sp9_F_contig8973:2483..3215Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8973 2484..3215 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8973.17166.1prot_Ecto-sp9_F_contig8973.17166.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8973 2484..3215 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8973.17166.1

>prot_Ecto-sp9_F_contig8973.17166.1 ID=prot_Ecto-sp9_F_contig8973.17166.1|Name=mRNA_Ecto-sp9_F_contig8973.17166.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=244bp
MAMSEATANRKRRAEILKQRRRDGKVKQVMSSTLRNKRAAGAKLKADKLA
QRERAQREKREMRAEIKAQKKEIREERMRNAKLERELRSANAREAKQKRE
TMKKDACTDTNLMAIRQAMVAAVPTALEMRGFTSAAFSRRRETMSSTWTS
LRKFLVACHKKNFESAKKKKGAKAPRNPSKGSGAPVFKNRAVFLPDIGQV
IDEAAYKKATAAAFGRGNVRAPGIPKKRGKSPRIAPIFIGTNV*
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mRNA from alignment at Ecto-sp9_F_contig8973:2484..3215+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8973.17166.1 ID=mRNA_Ecto-sp9_F_contig8973.17166.1|Name=mRNA_Ecto-sp9_F_contig8973.17166.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=732bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8973:2484..3215+ (Ectocarpus species9 EcSCA_722f female)
ATGGCTATGTCCGAGGCGACGGCCAATCGTAAAAGACGGGCAGAAATTCT
GAAGCAGAGGCGGCGTGATGGGAAAGTAAAACAGGTCATGTCTTCAACGC
TGAGGAATAAACGCGCCGCGGGTGCCAAACTAAAGGCGGACAAGCTGGCT
CAAAGAGAAAGAGCTCAGCGAGAGAAAAGGGAAATGCGTGCCGAGATTAA
AGCGCAAAAGAAGGAGATCAGGGAGGAGAGGATGCGCAATGCCAAATTAG
AAAGAGAATTGCGATCGGCAAACGCTCGTGAAGCCAAGCAGAAGAGAGAA
ACAATGAAGAAGGATGCGTGCACTGATACCAATTTGATGGCTATCCGCCA
AGCTATGGTGGCGGCGGTGCCGACAGCTTTGGAGATGAGAGGTTTCACGA
GCGCGGCTTTCTCGCGACGCAGAGAAACAATGAGCTCCACGTGGACCTCG
CTAAGGAAGTTTCTCGTCGCGTGTCACAAGAAGAACTTTGAGTCCGCCAA
GAAGAAAAAAGGAGCTAAAGCACCACGAAATCCGTCGAAAGGTTCAGGCG
CCCCTGTTTTTAAGAATCGGGCAGTATTCCTGCCTGATATAGGTCAGGTC
ATTGACGAAGCCGCGTATAAAAAAGCTACAGCGGCCGCGTTCGGCCGAGG
AAACGTCCGTGCACCTGGAATACCAAAGAAGAGGGGAAAGTCGCCAAGAA
TAGCTCCTATTTTCATCGGAACCAATGTCTAA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8973:2484..3215+

>mRNA_Ecto-sp9_F_contig8973.17166.1 ID=mRNA_Ecto-sp9_F_contig8973.17166.1|Name=mRNA_Ecto-sp9_F_contig8973.17166.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1464bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8973:2484..3215+ (Ectocarpus species9 EcSCA_722f female)
ATGGCTATGTCCGAGGCGACGGCCAATCGTAAAAGACGGGCAGAAATTCT
GAAGCAGAGGCGGCGTGATGGGAAAGTAAAACAGGTCATGTCTTCAACGC
TGAGGAATAAACGCGCCGCGGGTGCCAAACTAAAGGCGGACAAGCTGGCT
CAAAGAGAAAGAGCTCAGCGAGAGAAAAGGGAAATGCGTGCCGAGATTAA
AGCGCAAAAGAAGGAGATCAGGGAGGAGAGGATGCGCAATGCCAAATTAG
AAAGAGAATTGCGATCGGCAAACGCTCGTGAAGCCAAGCAGAAGAGAGAA
ACAATGAAGAAGGATGCGTGCACTGATACCAATTTGATGGCTATCCGCCA
AGCTATGGTGGCGGCGGTGCCGACAGCTTTGGAGATGAGAGGTTTCACGA
GCGCGGCTTTCTCGCGACGCAGAGAAACAATGAGCTCCACGTGGACCTCG
CTAAGGAAGTTTCTCGTCGCGTGTCACAAGAAGAACTTTGAGTCCGCCAA
GAAGAAAAAAGGAGCTAAAGCACCACGAAATCCGTCGAAAGGTTCAGGCG
CCCCTGTTTTTAAGAATCGGGCAGTATTCCTGCCTGATATAGGTCAGGTC
ATTGACGAAGCCGCGTATAAAAAAGCTACAGCGGCCGCGTTCGGCCGAGG
AAACGTCCGTGCACCTGGAATACCAAAGAAGAGGGGAAAGTCGCCAAGAA
TAGCTCCTATTTTCATCGGAACCAATGTCTAAATGGCTATGTCCGAGGCG
ACGGCCAATCGTAAAAGACGGGCAGAAATTCTGAAGCAGAGGCGGCGTGA
TGGGAAAGTAAAACAGGTCATGTCTTCAACGCTGAGGAATAAACGCGCCG
CGGGTGCCAAACTAAAGGCGGACAAGCTGGCTCAAAGAGAAAGAGCTCAG
CGAGAGAAAAGGGAAATGCGTGCCGAGATTAAAGCGCAAAAGAAGGAGAT
CAGGGAGGAGAGGATGCGCAATGCCAAATTAGAAAGAGAATTGCGATCGG
CAAACGCTCGTGAAGCCAAGCAGAAGAGAGAAACAATGAAGAAGGATGCG
TGCACTGATACCAATTTGATGGCTATCCGCCAAGCTATGGTGGCGGCGGT
GCCGACAGCTTTGGAGATGAGAGGTTTCACGAGCGCGGCTTTCTCGCGAC
GCAGAGAAACAATGAGCTCCACGTGGACCTCGCTAAGGAAGTTTCTCGTC
GCGTGTCACAAGAAGAACTTTGAGTCCGCCAAGAAGAAAAAAGGAGCTAA
AGCACCACGAAATCCGTCGAAAGGTTCAGGCGCCCCTGTTTTTAAGAATC
GGGCAGTATTCCTGCCTGATATAGGTCAGGTCATTGACGAAGCCGCGTAT
AAAAAAGCTACAGCGGCCGCGTTCGGCCGAGGAAACGTCCGTGCACCTGG
AATACCAAAGAAGAGGGGAAAGTCGCCAAGAATAGCTCCTATTTTCATCG
GAACCAATGTCTAA
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