mRNA_Ecto-sp9_F_contig897.17161.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig897.17161.1
Unique NamemRNA_Ecto-sp9_F_contig897.17161.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig897.17161.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig897contigEcto-sp9_F_contig897:10598..12872 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size411
Cds size327
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig897.17161.1prot_Ecto-sp9_F_contig897.17161.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig897 10680..12872 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930956.426571-UTR-Ecto-sp9_F_contig897:10597..106791622930956.426571-UTR-Ecto-sp9_F_contig897:10597..10679Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig897 10598..10679 -
1692278966.2809267-UTR-Ecto-sp9_F_contig897:10597..106791692278966.2809267-UTR-Ecto-sp9_F_contig897:10597..10679Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig897 10598..10679 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930956.4381843-CDS-Ecto-sp9_F_contig897:10679..108201622930956.4381843-CDS-Ecto-sp9_F_contig897:10679..10820Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig897 10680..10820 -
1692278966.290401-CDS-Ecto-sp9_F_contig897:10679..108201692278966.290401-CDS-Ecto-sp9_F_contig897:10679..10820Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig897 10680..10820 -
1622930956.450305-CDS-Ecto-sp9_F_contig897:11545..116551622930956.450305-CDS-Ecto-sp9_F_contig897:11545..11655Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig897 11546..11655 -
1692278966.3001199-CDS-Ecto-sp9_F_contig897:11545..116551692278966.3001199-CDS-Ecto-sp9_F_contig897:11545..11655Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig897 11546..11655 -
1622930956.4679205-CDS-Ecto-sp9_F_contig897:12796..128721622930956.4679205-CDS-Ecto-sp9_F_contig897:12796..12872Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig897 12797..12872 -
1692278966.3102558-CDS-Ecto-sp9_F_contig897:12796..128721692278966.3102558-CDS-Ecto-sp9_F_contig897:12796..12872Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig897 12797..12872 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig897.17161.1

>prot_Ecto-sp9_F_contig897.17161.1 ID=prot_Ecto-sp9_F_contig897.17161.1|Name=mRNA_Ecto-sp9_F_contig897.17161.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=109bp
SHGHGSHAHDDHGAEEGLVSPAKLGGRHIHVTNRGVRVQGSTTASGIQRP
SYLKGTAFARNQGRSGALMPCPTRAAAPTRADVTQDPMCEPSREGPEASP
RVERGRRW*
back to top

mRNA from alignment at Ecto-sp9_F_contig897:10598..12872-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig897.17161.1 ID=mRNA_Ecto-sp9_F_contig897.17161.1|Name=mRNA_Ecto-sp9_F_contig897.17161.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2275bp|location=Sequence derived from alignment at Ecto-sp9_F_contig897:10598..12872- (Ectocarpus species9 EcSCA_722f female)
AGCCATGGACACGGCTCCCACGCTCACGACGATCACGGCGCGGAGGAAGG
GCTGGTGTCCCCGGCGAAGCTTGGAGGTGACCGATTTTTCGTCTTGTCGA
TCGGCTGCCGATGTGTCAGGGTATTGGACTGGACGGGTGATGTGGTTGGT
CGTGTGGGGATGGGCCACGTCGCCGTGCCCACGAATCTTGTCGACGGCGC
CATTAGTTCTCTTTAGGTGATGGAGAGGAGGGAGCCTTCGTAGTGGGTGC
TTGTTGACGACGAATGTTTCGTGCGTGTGTTTTGCGAGAGTGTGTCACTC
GCCCCCCCGGCCCGCGAAAAACGGGCATATCGCTCCGTCCTGGCATTGTC
AGGATGCGAGGGCATTGATTGGTCGAACGACTACGGCATGCATTGACATG
AGTACACTACCCCCGGTGTGGTCCTGTCGTGCGGGATGCAAAGTATTCGC
GTCGAAAGCAGTCACCGGGTTGTAGAGCAGAAGGAAGTGTAGCGTGGTGT
GCCAACAGTTCCCGTTACCTCAGCATGTCGCAAAGGGGAAGGCAAAGAAA
GGCCCACGCAAGGGTCGTTTTCTCTGACAATTTGGTGTTGTTGTTGTTGT
TCCAGAAATAAATGTTGATTTGTGTTGATTTGTTAGAGACAAAGGGAGCG
AGCTTCGCGCTTCGCTCATCCCCCCCCCGCCTCTCCGTGGTGTGTGGTTG
TGGGTTGTTGTCGGTTTTTATCCCCGGGGCTGGTGTTGGCGTTTTTGCTC
GTTGGAGGGATTGTGGAATGTTATGTGCATATCTTGCTTGTCGAATCGGA
CCGGGTCGTATGCCGAGGAGAGAAGCAAAGGCTAGGGAGCGTACCTACCC
GCAGGCACTCATGGCATATCAGGCCGTTCGGAAGCATCTCGTTTGGGTGT
GGGGTTTTAGCCTTGACGGGCACCTGATTTTCTTACTCGTCGTGGAGTAC
GACATGTTGTCTGCTGCGGAAGGTTTAGTACGTTTCCTGTGCGGTACAAC
GTTCCTGCTGAGGCGACGAGGTCTTTGTGCACCGTATTCTAGATTGAAAT
TATACATACAACGACAGTGAAGTTGAGATAATACCCCGACTAAAGGAATG
TGTTAAAAAAGGCTTCACAGCAGTGTTGAGAAGCACCATTTTTTTTGTTG
AAGTGATGAAGCCACCCACGGTCAGCCCTCTGACCGTCGGCGGTGGTTGT
GTCCCTTGCGCCATCAGGTCGACATATACATGTCACCAACAGAGGTGTGC
GTGTGCAAGGTTCGACGACGGCGTCCGGGATACAGCGCCCCTCGTATCTG
AAGGGGACTGCCTTCGCGAGAAATCAGGTCCATGAGGAAATAGAAGGGAG
GGGGTACGCAGAATCCCTAACCCTGACCCTATCCAAACTTCCCCGATCGT
ATGCTGTATCCAACATGTTCTCTTAGGCGATAAACACTGCGAAGGCTACT
CGAACCTTACGAAGGTTAATGACTGAACGAGGCATTTCGCGTGATATCTG
AACGAGGCATGTGCTCCTGCGGAACGAGATTCTTGTTACCGTGGTTCTTT
TACGAACTCTAGGTTCCTTTCACGTTCGCTGCACGATCTTGTCGGCATGT
ATGTACAGTTGCGTTCCCGTCGAGTGATGATTCAATATGGGAACTCGCGG
GACTACGTGAGGACGCCCGCGAAATAATCTCGTCACGCTGAGGTTGGTCG
ATTTCTTGTTGGCTGATCGCACTGGGATAACCTTGCCGGTGTATATATTG
GGAGCCAATCGGATAGAACCAGGGCACGGAACACTACTGTATCAGCTGCA
GAGCCCCATTATCACTTCTCTATTCCAACAACAAAACAAAAGAACGGAGA
GGACGCCATTCTTCCCGCTGGTGAGCCGTTACAACTCCAGTTTCTCGGCT
ACAAACACGAGGTTGCGTATTCATCTACAGTAGCCTCTCGATCGCGGATA
TTTGCTAGGTGGATTCTAGAGAGTGGTTCTGTGAATTCTACCACCGGCAC
GGACAAGAAGAAGCCTTGTTGCCGCCCACACCGCCTTCGCTATCGGCCGC
AGGGCAGGAGCGGAGCGCTGATGCCATGCCCGACCCGTGCAGCCGCGCCG
ACGCGGGCCGACGTCACCCAAGACCCCATGTGCGAGCCATCACGGGAGGG
TCCCGAGGCGAGCCCCCGCGTGGAACGTGGGCGTAGATGGTAGAGTCTTT
GTGCCAGGTTCGTATGGCGTCACGCTCGTTTCTGGGAACAGGTTTTCCTA
AAGCAACACCCCCACAAAAAATGGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig897:10598..12872-

>mRNA_Ecto-sp9_F_contig897.17161.1 ID=mRNA_Ecto-sp9_F_contig897.17161.1|Name=mRNA_Ecto-sp9_F_contig897.17161.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=654bp|location=Sequence derived from alignment at Ecto-sp9_F_contig897:10598..12872- (Ectocarpus species9 EcSCA_722f female)
AGCCATGGACACGGCTCCCACGCTCACGACGATCACGGCGCGGAGGAAGG
GCTGGTGTCCCCGGCGAAGCTTGGAGAGCCATGGACACGGCTCCCACGCT
CACGACGATCACGGCGCGGAGGAAGGGCTGGTGTCCCCGGCGAAGCTTGG
AGGTCGACATATACATGTCACCAACAGAGGTGTGCGTGTGCAAGGTTCGA
CGACGGCGTCCGGGATACAGCGCCCCTCGTATCTGAAGGGGACTGCCTTC
GCGAGAAATCAGGTCGACATATACATGTCACCAACAGAGGTGTGCGTGTG
CAAGGTTCGACGACGGCGTCCGGGATACAGCGCCCCTCGTATCTGAAGGG
GACTGCCTTCGCGAGAAATCAGGGCAGGAGCGGAGCGCTGATGCCATGCC
CGACCCGTGCAGCCGCGCCGACGCGGGCCGACGTCACCCAAGACCCCATG
TGCGAGCCATCACGGGAGGGTCCCGAGGCGAGCCCCCGCGTGGAACGTGG
GCGTAGATGGTAGGGCAGGAGCGGAGCGCTGATGCCATGCCCGACCCGTG
CAGCCGCGCCGACGCGGGCCGACGTCACCCAAGACCCCATGTGCGAGCCA
TCACGGGAGGGTCCCGAGGCGAGCCCCCGCGTGGAACGTGGGCGTAGATG
GTAG
back to top