mRNA_Ecto-sp9_F_contig8969.17158.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig8969.17158.1 vs.
Match: Mon2_C (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPX0_9PHAE) HSP 1 Score: 379 bits (973), Expect = 1.340e-118 Identity = 234/271 (86.35%), Postives = 237/271 (87.45%), Query Frame = 1
Query: 1 VFLAVRGRAARRTTVGGGEAFEGVLFRTMGLFALTPHVDTREATLQSLYTILQSCG--QVLDSAWPVILNLLLSVAKGATSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDSGAAEMRPVVWGGACLSLAFKCLQLVVDDFLERLPREQVPRLVTCAGAFGAQTESVNLSLTAIGMLWTVCDTFADATASGNPAPAAPGGNKDVLPPSGNTVPTXXXXXXXXXPALSGPSSSSSGHKSSXXXAHKARPSLRSLWPTMLFQ 807
VFLAVRGRAARRTTVGGGEAFEGVLFRTMGLFALTPHVDTREATLQSLYTILQ+ QVLDSAWPVILNLLLSVAKGATSA XXXXXXXXXXXX EDSGAAEMRPVVWGGACLSL+FKCLQLVVDDFLERLPREQVPRLVTCAGAFGAQTESVNLSLTAIGMLWTVCDTFADATASGN A AAPGGNKDVLPPSGN VPTXXXXXXXXXPALSGPSSSSSGHK+SXXX HKARPSLRSLWPTMLFQ
Sbjct: 202 VFLAVRGRAARRTTVGGGEAFEGVLFRTMGLFALTPHVDTREATLQSLYTILQARREPQVLDSAWPVILNLLLSVAKGATSAAPSPXXXXXXXXXXXXAESKGGDTDNDAAAGEYDEE--EDSGAAEMRPVVWGGACLSLSFKCLQLVVDDFLERLPREQVPRLVTCAGAFGAQTESVNLSLTAIGMLWTVCDTFADATASGNAALAAPGGNKDVLPPSGNIVPTXXXXXXXXXPALSGPSSSSSGHKASXXXXHKARPSLRSLWPTMLFQ 470
BLAST of mRNA_Ecto-sp9_F_contig8969.17158.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQH8_ECTSI) HSP 1 Score: 350 bits (898), Expect = 5.330e-107 Identity = 231/279 (82.80%), Postives = 232/279 (83.15%), Query Frame = 1
Query: 1 VFLAVRGRAARRTTVGGGEAFEGVLFRTMGLFALTPHVDTREATLQSLYTILQ------SCGQVLDSAWPVILNLLLSVAKGATSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDSGAAEMRPVVWGGACLSLAFKCLQLVVDDFLERLPREQVPRLVTCAGAFGAQTESVNLSLTAIGMLWTVCDTFA-DATASGNPAPAAPGGNKDVLPPSGNTVPTXXXXXXXXXPALSGPSSSSSG---HKSSXXXAHKARPSLRSLWPTMLFQ 807
VFLAVRGRAARRTTVGGGEAFEGVLFRTMGLFALTPHVDTREATLQSLYTILQ SCGQVLDSAWPVILNLLLSVAKGATSAXXXXXXXXXXXXXXXXXXXX EDSGAA+MRPVVWGGACLSLAFKCLQLVVDDFLERLPREQVPRLVTCAGAFGAQTESVNLSLTAIGMLWTVCDTFA DATA GNPAPAAPGGNKD LPPSGN VPT XXXXXXXX H XXXAHKARPSLRSLWPTMLFQ
Sbjct: 1121 VFLAVRGRAARRTTVGGGEAFEGVLFRTMGLFALTPHVDTREATLQSLYTILQARREPQSCGQVLDSAWPVILNLLLSVAKGATSAXXXXXXXXXXXXXXXXXXXXVGDTDNDAAAGEYDDE--EDSGAADMRPVVWGGACLSLAFKCLQLVVDDFLERLPREQVPRLVTCAGAFGAQTESVNLSLTAIGMLWTVCDTFAEDATAGGNPAPAAPGGNKDFLPPSGNNVPTGXXXXXXXXXXXXXXXXXXXXXXXHXXXXXXAHKARPSLRSLWPTMLFQ 1397
BLAST of mRNA_Ecto-sp9_F_contig8969.17158.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQS4_9STRA) HSP 1 Score: 124 bits (310), Expect = 3.010e-28 Identity = 71/172 (41.28%), Postives = 94/172 (54.65%), Query Frame = 1
Query: 64 EGVLFRTMGLFALTPHVDTREATLQSLYTILQSCGQVLDSAWPVILNLLLSVAKGATSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDSGAAEMRPVVWGGACLSLAFKCLQLVVDDFLERLPREQVPRLVTCAGAFGAQTESVNLSLTAIGMLWTVCDTF 579
+ +LF + A TP++DTREATL +L+ SCGQV+D AW IL+LL +VA+ + +GA + WGG+CL+LAF L+L+VDDFL+R+P +VP LV C G F AQ E+VNLSLTA+GMLWTV D F
Sbjct: 1021 QALLFDAVAQLAQTPYIDTREATLSALHN---SCGQVVDRAWGSILSLLTAVAQASHQLHHPGAGSCSGG-----------------------------AGAGQQ----WGGSCLALAFTSLKLIVDDFLDRVPPVEVPTLVRCTGTFAAQVENVNLSLTAVGMLWTVSDAF 1156
BLAST of mRNA_Ecto-sp9_F_contig8969.17158.1 vs.
Match: Protein (MON2 homolog n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CR02_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 3.530e-15 Identity = 57/186 (30.65%), Postives = 77/186 (41.40%), Query Frame = 1
Query: 115 DTREATLQSLYTILQSCGQVLDSAWPVILNLLLSVAKGATSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDSGAAEMRPVVWGGACLSLAFKCLQLVVDDFLERLPREQVPRLVTCAGAFGAQTESVNLSLTAIGMLWTVCD----------TFADATASGNPAPAAPGGNKDVL 642
DTRE L +L+ +LQS G +LDS W + N+L +V ++ ++ WG +CL AF+ L+L+VDD LE +P P V C G F AQ VN+SL A+GM+WTV D A TASG G DV+
Sbjct: 1090 DTREHALHALFRVLQSSGHILDSGWSEVFNILGAVVSRRQGEKEQSPRPTRFPDGSCQRTSFETPQNPSSSFLAQYTEGRDN--VSDSTQSFWGESCLPAAFRSLKLIVDDNLEHVPPAYFPWCVACIGGFAAQPYDVNMSLAAMGMVWTVADFVSRLGLREVVVAQRTASGEEDGGLEDGLMDVI 1273
BLAST of mRNA_Ecto-sp9_F_contig8969.17158.1 vs.
Match: Protein (MON2 homolog n=2 Tax=Hyalella azteca TaxID=294128 RepID=A0A8B7PLW5_HYAAZ) HSP 1 Score: 75.9 bits (185), Expect = 8.390e-12 Identity = 46/181 (25.41%), Postives = 73/181 (40.33%), Query Frame = 1
Query: 37 TTVGGGEAFEGVLFRTMGLFALTPHVDTREATLQSLYTILQSCGQVLDSAWPVILNLLLSVAKGATSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDSGAAEMRPVVWGGACLSLAFKCLQLVVDDFLERLPREQVPRLVTCAGAFGAQTESVNLSLTAIGMLWTVCDTF 579
T + + +L + + H D R+ L+++ T+L SCG+ L WP IL ++ +V + + + + LAF+CLQLVV DFL +P +P V A FG T+ +N+SLTAIG++W + D F
Sbjct: 980 TAFRDNQRLQALLLSPLSELSTCSHADVRQKQLETMLTVLHSCGEQLQHGWPTILTVIAAVNENHSDSL------------------------------------------------------VRLAFQCLQLVVTDFLPVMPWRCLPLTVASAAKFGEHTQELNISLTAIGLMWNISDYF 1106
BLAST of mRNA_Ecto-sp9_F_contig8969.17158.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UNQ0_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 2.080e-10 Identity = 38/83 (45.78%), Postives = 49/83 (59.04%), Query Frame = 1
Query: 358 DSGAAEMRPVV----WGGACLSLAFKCLQLVVDDFLERLPREQVPR-------LVTCAGAFGAQTESVNLSLTAIGMLWTVCD 573
D A RPV+ W +C +LAF+CL+L+VDDFL+ LP P L+ C +FG+ T VN SLTA GMLWT+ D
Sbjct: 692 DDAAVNDRPVIDRSKWS-SCSTLAFRCLKLIVDDFLDELPSPPDPSSASTRTALLDCCASFGSSTHDVNTSLTATGMLWTIAD 773
BLAST of mRNA_Ecto-sp9_F_contig8969.17158.1 vs.
Match: Brefeldin (A-inhibited guanine nucleotide-exchange protein 2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GR20_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 5.530e-10 Identity = 48/158 (30.38%), Postives = 69/158 (43.67%), Query Frame = 1
Query: 109 HVDTREATLQSLYTILQSCGQVLDSAWPVI---LNLLLSVAKGATSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDSGAAEMRPVVWGGACLSLAFKCLQLVVDDFLERLPREQVPRLVTCAGAFGAQTESVNLSLTAIGMLWTVCD 573
H+D REAT+Q++ I+ +CG +L W ++ L+ + V K T A D +++ +V AFK +QL+VDDFL L + L C AFG Q VN+SLT+I MLWT+CD
Sbjct: 1264 HIDAREATIQAMGRIIGTCGHLLGGGWRILIAELSRVTGVVKAKTDAESFSVP---------------------------------DYKRSDVERLV------PTAFKSVQLIVDDFLPGLSLQHKKELALCICAFGQQEPHVNISLTSITMLWTMCD 1382
BLAST of mRNA_Ecto-sp9_F_contig8969.17158.1 vs.
Match: Hypothetical (protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JAY4_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 7.280e-10 Identity = 48/165 (29.09%), Postives = 71/165 (43.03%), Query Frame = 1
Query: 103 TPHVDTREATLQSLYTILQSCGQVLDS-AWPVILNLLLSVAKGATSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDSGAAEMRPVVWGGACLSLAFKCLQLVVDDFLERLPREQVP-------RLVTCAGAFGAQTESVNLSLTAIGMLWTVCD 573
T DT EA L ++Y IL+ G L +WP+++N + +++ ++A + + A R A +LAF+CL+L +DDFL+ LP P L+ C AFG+ VN SLTA GMLWT+ D
Sbjct: 829 TDQHDTAEAGLNAVYVILEGAGHNLSGESWPLLINAIATLSGNNSTAAEKGLT--------------------------------DYTTAGIDRSTADWAATSALAFRCLKLTIDDFLDELPSSTTPGFQPTQAALLDCCAAFGSSRHDVNTSLTATGMLWTLAD 961
BLAST of mRNA_Ecto-sp9_F_contig8969.17158.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2R7R7_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 9.870e-10 Identity = 49/171 (28.65%), Postives = 74/171 (43.27%), Query Frame = 1
Query: 61 FEGVLFRTMGLFALTPHVDTREATLQSLYTILQSCGQVLDSAWPVILNLLLSVAKGATSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDSGAAEMRPVVWGGACLSLAFKCLQLVVDDFLERLPREQVPRLVTCAGAFGAQTESVNLSLTAIGMLWTVCD 573
F+ L L + H D++EAT+QS++ ++ +CG VLD AW +++ L S GA D ++ ++ + FK ++L+VDDFL L +L C AFG Q VN+SLTAI MLW++CD
Sbjct: 1009 FQVDLVEGFSLLFKSQHADSKEATVQSIHRMIGTCGYVLDEAWGILIAQL-SFVTGARELEDVPENVCVP-----------------------------DYTKKDIHKLI------PIGFKAVELIVDDFLPALSFLHREQLARCIRAFGDQEPHVNISLTAITMLWSMCD 1143
BLAST of mRNA_Ecto-sp9_F_contig8969.17158.1 vs.
Match: Hypothetical (protein (Fragment) n=3 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1ELS7_HEMAN) HSP 1 Score: 64.7 bits (156), Expect = 1.260e-9 Identity = 43/151 (28.48%), Postives = 65/151 (43.05%), Query Frame = 1
Query: 115 DTREATLQSLYTILQSCGQVLDSAWPVILNLLLSVAKGATSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDSGAAEMRPVVWGGACLSLAFKCLQLVVDDFLERLPREQVPRLVTCAGAFGAQTESVNLSLTAIGMLWTV 567
DT+ L LY +LQSCG+ + +AWP++L +L VA +D A +++ AF CL+L+ +DFL LP E + L+T G+FG +N+SLTAI +LW +
Sbjct: 22 DTKNNVLDGLYEVLQSCGEEVKAAWPMVLAMLKGVA--------------------------------------------QDMEAQQVQQ----------AFMCLKLIRNDFLSALPIECLQLLLTTVGSFGLADVDLNISLTAITLLWNI 118 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8969.17158.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig8969.17158.1 >prot_Ecto-sp9_F_contig8969.17158.1 ID=prot_Ecto-sp9_F_contig8969.17158.1|Name=mRNA_Ecto-sp9_F_contig8969.17158.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=269bp VFLAVRGRAARRTTVGGGEAFEGVLFRTMGLFALTPHVDTREATLQSLYTback to top mRNA from alignment at Ecto-sp9_F_contig8969:1224..2512- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig8969.17158.1 ID=mRNA_Ecto-sp9_F_contig8969.17158.1|Name=mRNA_Ecto-sp9_F_contig8969.17158.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1289bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8969:1224..2512- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8969:1224..2512- >mRNA_Ecto-sp9_F_contig8969.17158.1 ID=mRNA_Ecto-sp9_F_contig8969.17158.1|Name=mRNA_Ecto-sp9_F_contig8969.17158.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1614bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8969:1224..2512- (Ectocarpus species9 EcSCA_722f female)back to top |