mRNA_Ecto-sp9_F_contig8965.17156.1 (mRNA) Ectocarpus species9 EcSCA_722f female
|
Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig8965.17156.1 vs.
Match: Mitochondrial (import inner membrane translocase subunit TIM50 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBI3_ECTSI) HSP 1 Score: 468 bits (1204), Expect = 1.070e-161 Identity = 237/254 (93.31%), Postives = 239/254 (94.09%), Query Frame = 1
Query: 1 YSSPVKDKLLLDCPLPPGALPPPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMSQLYEIVVFTDSMGGLADEWITQMDPQGTISQRVYRDGTRYIDGKYVKDLSALNRPLEQTLIIDDNADCISMQPENAIKVKAFSLDDGSDPTADTTLYDLAPFLRALATQGVADFRDVLRPHVGEDSNAVVADFRSKVNAVRQKEDAEKNKGLGGLVRQIXXXXXXXXXXXXXXGMLTSKDIVGDAPETLSPGMA 762
YSSPVKDKLLLDCPLPPGALPPPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMSQLYEIVVFTDSMGGLADEWITQMDPQGTISQRVYRDGTRYIDGKYVKDLSALNRPLEQTLIIDDNADCISMQPENAIKVKAFSL+DGSDPTADT LYDLAPFLRALATQGVADFRDVLRPHVGEDSNAVVADFRSKVNAVRQKEDAEK+KGLGGLVRQI GMLTSKDIVGDAPETLSPGMA
Sbjct: 220 YSSPVKDKLLLDCPLPPGALPPPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMSQLYEIVVFTDSMGGLADEWITQMDPQGTISQRVYRDGTRYIDGKYVKDLSALNRPLEQTLIIDDNADCISMQPENAIKVKAFSLEDGSDPTADTALYDLAPFLRALATQGVADFRDVLRPHVGEDSNAVVADFRSKVNAVRQKEDAEKSKGLGGLVRQIAPVVGAGGPAAGMGGMLTSKDIVGDAPETLSPGMA 473
BLAST of mRNA_Ecto-sp9_F_contig8965.17156.1 vs.
Match: Mitochondrial (import inner membrane translocase subunit TIM50 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRZ2_9STRA) HSP 1 Score: 217 bits (553), Expect = 1.660e-64 Identity = 118/265 (44.53%), Postives = 162/265 (61.13%), Query Frame = 1
Query: 1 YSSPVKDKLLLDCP---LPPGALPPPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMSQLYEIVVFTDSMGGLADEWITQMDP-----------QGTISQRVYRDGTRYIDGKYVKDLSALNRPLEQTLIIDDNADCISMQPENAIKVKAFSLDDGSDPTADTTLYDLAPFLRALATQGVADFRDVLRPHVGEDSNAVVADFRSKVNAVRQKEDAEKNKGLGGLVRQIXXXXXXXXXXXXXXGML-TSKDIVGDAPETLS 750
++ P DKLL D P LPP PPTLVLDLE TL+ + R+ GWRVA+RPG++ FL+EMS YEIV+FT + G A+ +T +DP G S R+YRD T + +G +VKDLS +NR ++ +IIDD + +QP+N I++K + + G DP ADT L DL PFLRALA +GV D+R+VLRP G+DS+AVVA++R +V+A + N GLGGL+R + +S+D+VG AP S
Sbjct: 137 FTEPSSDKLLPDWPPSELPPDTPCPPTLVLDLENTLVHMDWHRRTGWRVARRPGVEEFLREMSMYYEIVIFTSAHVGSAEPIVTSLDPAVSRARGVEVSSGYTSHRLYRDATLFSNGTHVKDLSKINRDMKHVIIIDDEPEAFQLQPDNGIRIKPYEIKPGEDPHADTALTDLIPFLRALAMEGVRDYRNVLRPFRGQDSDAVVAEYRRRVDAANAAQRERDNSGLGGLLRGAKRGHLVPDAQPTRRSAIPSSRDLVGAAPADAS 401
BLAST of mRNA_Ecto-sp9_F_contig8965.17156.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FDJ8_PYTOL) HSP 1 Score: 178 bits (451), Expect = 2.150e-50 Identity = 102/224 (45.54%), Postives = 143/224 (63.84%), Query Frame = 1
Query: 1 YSSPVKDKLLLDCPLP---PGALPPPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMSQLYEIVVFTDSMGGLADEWITQMDPQGTISQRVYRDGTRYIDGKYVKDLSALNRPLEQTLIIDDNADCISMQPENAIKVKAFSLDDGSDPTADTTLYDLAPFLRALATQGVADFRDVLRPHVGEDSNAVVADFRSK----VNAVRQKEDAEKNKGLGGLVR 651
Y+ P K+KLL D P+P P P P LVLDLE TL+ + ++RK GWR AKRPG+D FL+ ++Q YEIVVF+ + +A+E + ++D + + + R+ TRY + +VKDLS LNR L Q +IIDD+ +QP+NAI +KA++ DG D D L DL PFL+ALA++ V DFR VL ED V+ D +K V A+ +++ EK KGLGG +R
Sbjct: 143 YTEPSKEKLLPDWPIPQVPPDTPPVPVLVLDLEDTLVHSEWSRKHGWRHAKRPGVDEFLEALAQYYEIVVFSQNHMYMAEEILVKLDRKQNVLHLLARESTRYFNSAHVKDLSKLNRDLRQVVIIDDDPSAYQLQPDNAIPIKAYT--DGRD-RGDHELKDLIPFLKALASERVGDFRSVLAEFRDEDG--VIRDLPTKYGARVRALEMQKEQEKQKGLGGFIR 361
BLAST of mRNA_Ecto-sp9_F_contig8965.17156.1 vs.
Match: Mitochondrial (import inner membrane translocase subunit TIM50 (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y4U5_9STRA) HSP 1 Score: 176 bits (447), Expect = 1.210e-49 Identity = 105/226 (46.46%), Postives = 146/226 (64.60%), Query Frame = 1
Query: 1 YSSPVKDKLLLDCPLP--PGALPP-PTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMSQLYEIVVFTDSMGGLADEWITQMDPQGTISQRVYRDGTRYIDGKYVKDLSALNRPLEQTLIIDDNADCISMQPENAIKVKAFSLDDGSDPTADTTLYDLAPFLRALATQGVADFRDVLRPHVGE--DSNAVVADFRSK----VNAVRQKEDAEKNKGLGGLVR 651
++ P + KLL D P+P P PP P LVLDLE TL+ + ++RK GWR AKRPG+D FL+ + Q YEIV+F+ + G A+E +T++DP+ + RD TRY++G +VKDL+ LNR L Q +I+DD+ +QPENAI +K F+ DG D D L DL PFL+ALA++ V DFR V +GE D + V+ D SK V+A+ +++ EK KG GG VR
Sbjct: 152 FTDPSRQKLLPDWPIPQVPADTPPVPVLVLDLEDTLVHSEWSRKHGWRHAKRPGVDEFLETLCQYYEIVIFSQNYG--AEEIVTKLDPKQCALHCLSRDSTRYLNGAHVKDLANLNRDLRQVVILDDDPAAYQLQPENAIPIKPFT--DGRD-REDHELKDLIPFLKALASERVPDFRSV----IGEFRDDDGVIRDVASKYGARVHAMEMQKEQEKRKGFGGFVR 368
BLAST of mRNA_Ecto-sp9_F_contig8965.17156.1 vs.
Match: Mitochondrial (import inner membrane translocase subunit TIM50 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GPP0_9STRA) HSP 1 Score: 175 bits (443), Expect = 9.950e-49 Identity = 88/223 (39.46%), Postives = 141/223 (63.23%), Query Frame = 1
Query: 1 YSSPVKDKLLLDCP----LPPGALPPPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMSQLYEIVVFTDSMGGLADEWITQMDPQGTISQRVYRDGTRYIDGKYVKDLSALNRPLEQTLIIDDNADCISMQPENAIKVKAFSLDDGSDPTADTTLYDLAPFLRALATQGVADFRDVLRPHVGEDSNAVVADFRSKVNAVRQKEDAEKNKGLGGLVRQI 657
++ P++ KLL D P +P PPTLVLDLEGTL+ + + R+ GWR AKRPG+D FL++M+Q YEIV+F+++ + + + +DP+ ++ R+ TRY +G Y+KDLS LNR L++ +IIDD+ S+QPEN I + AF + DT+L+D+ FL AL +GV DF +L ++ + ++ SK+ ++ +E+ +N+GLG LV+ +
Sbjct: 113 FTEPIRQKLLPDWPFFPNIPADTPCPPTLVLDLEGTLVKSTWDRRHGWRHAKRPGVDKFLQDMAQYYEIVLFSNNTASIVEPIMMSLDPENVCWHKLTREATRYENGVYIKDLSHLNRSLKKMVIIDDDEQAFSLQPENGIHINAFK---NARDKNDTSLHDIGKFLAALVHEGVEDFPALLSTFKSRNAEDISNEYLSKLRTIKDREEENRNRGLGRLVKSL 332
BLAST of mRNA_Ecto-sp9_F_contig8965.17156.1 vs.
Match: FCP1 (homology domain-containing protein n=1 Tax=Nitrososphaeria archaeon TaxID=2268198 RepID=A0A7J3D5D1_9ARCH) HSP 1 Score: 169 bits (429), Expect = 3.720e-48 Identity = 91/213 (42.72%), Postives = 136/213 (63.85%), Query Frame = 1
Query: 1 YSSPVKDKLLLDCPLPPGALPPPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMSQLYEIVVFTDSMGGLADEWITQMDPQGTISQRVYRDGTRYIDGKYVKDLSALNRPLEQTLIIDDNADCISMQPENAIKVKAFSLDDGSDPTADTTLYDLAPFLRALATQGVADFRDVLRPHVGEDSNAVVADFRSKVNAVRQKEDAEKNKGLG 639
Y+ P D+LL D LPP A TLVLDL+ L+ + +TR +GWR KRPG++ FLK+M+Q YE+VV+T + AD + ++DPQ + R+YRD TRY++GK+V+DLS LNR L+Q L+I + D ++QPENAIK+ ++ ++ + DTTL DL PFL A+ V D RDV+R + D + FR ++ V++ + ++ G G
Sbjct: 73 YADPPSDRLLPD--LPPHARHIKTLVLDLDDVLIHSDWTRARGWRTFKRPGVEDFLKDMAQYYELVVYTSQLPTYADPILDRLDPQRLLQYRLYRDSTRYVNGKHVRDLSMLNRDLKQVLLITASPDAYALQPENAIKLDKWT----TEKSDDTTLIDLLPFLEAIVRTSVTDVRDVVRSY---DGQYIPTAFRERMAKVQEAKLRRQSSGKG 276
BLAST of mRNA_Ecto-sp9_F_contig8965.17156.1 vs.
Match: Mitochondrial (import inner membrane translocase subunit TIM50 n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1G064_9STRA) HSP 1 Score: 174 bits (441), Expect = 5.380e-48 Identity = 101/258 (39.15%), Postives = 154/258 (59.69%), Query Frame = 1
Query: 1 YSSPVKDKLLLDCPLP--PGALP-PPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMSQLYEIVVFTDSMGGLADEWITQMDPQGTISQRVYRDGTRYIDGKYVKDLSALNRPLEQTLIIDDNADCISMQPENAIKVKAFSLDDGSDPT--ADTTLYDLAPFLRALATQGVADFRDVLRPHVGEDSNAVVADFRSKVNAVRQKEDAEKNKGLGGLVRQIXXXXXXXXXXXXXXGM-------LTSKDIVGDAP 738
++ P DKLL D P+P P LP P TLVLDLE TL+ + + RK GWR AKRPG+D FL++M+Q YEIV++T ++ G+A+ I +D Q I +YR+ TR+IDG +VKDLS+LNR +++ + ID++ + + P+N I+VK ++ DP D TL + P L + +G D +LR + G D++ +V ++S+V+ +R+ D + GLG L ++ M +TSKD+VGDAP
Sbjct: 152 FTKPHADKLLPDWPMPNVPPDLPCPHTLVLDLENTLVSSTWDRKHGWRHAKRPGVDQFLRKMAQYYEIVLYTSTIQGVAEPVIQNLDKQQAIMHALYRESTRFIDGVHVKDLSSLNRNVKKIIAIDNDEKALQLHPDNLIRVKPYT-----DPRNRTDDTLEKIMPILIEIVNKGYDDIPAILRQYRGMDADEIVEHYQSRVDEIRKNRDQIYSSGLGWLNQRRNNPMPEPELPPASSSMRPSGTPAITSKDLVGDAP 404
BLAST of mRNA_Ecto-sp9_F_contig8965.17156.1 vs.
Match: Mitochondrial (import inner membrane translocase subunit TIM50 n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KV46_9STRA) HSP 1 Score: 171 bits (433), Expect = 1.220e-47 Identity = 104/226 (46.02%), Postives = 146/226 (64.60%), Query Frame = 1
Query: 1 YSSPVKDKLLLDCPLP--PGALPP-PTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMSQLYEIVVFTDSMGGLADEWITQMDPQGTISQRVYRDGTRYIDGKYVKDLSALNRPLEQTLIIDDNADCISMQPENAIKVKAFSLDDGSDPTADTTLYDLAPFLRALATQGVADFRDVLRPHVGE--DSNAVVADFRSK----VNAVRQKEDAEKNKGLGGLVR 651
++ P + KLL D P+P P PP P LVLDLE TL+ + ++RK GWR AKRPG+D FL+ + Q YEIV+F+ + G A+E + ++DP+ + RD TRY++G +VKDLS+LNR L+Q +I+DD+ +QPENAI VK F+ +G D D L DL PFL+ALA++ V DFR+V +GE D + VV D SK V+ + ++ +K KG GG VR
Sbjct: 141 FTDPSRLKLLPDWPIPQVPADTPPVPVLVLDLEDTLVHSEWSRKHGWRHAKRPGVDEFLETLCQYYEIVIFSQNYG--AEEIVQKLDPKQCALHILSRDATRYLNGAHVKDLSSLNRDLQQVVILDDDPAAYQLQPENAIPVKPFT--NGRDRD-DHELKDLIPFLKALASERVPDFRNV----IGEFRDEDGVVRDLASKYGARVHQLEMQKQQQKKKGFGGFVR 357
BLAST of mRNA_Ecto-sp9_F_contig8965.17156.1 vs.
Match: Mitochondrial (import inner membrane translocase subunit TIM50 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WIV8_GLOUD) HSP 1 Score: 171 bits (432), Expect = 1.330e-47 Identity = 99/224 (44.20%), Postives = 141/224 (62.95%), Query Frame = 1
Query: 1 YSSPVKDKLLLDCPLP--PGALPP-PTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMSQLYEIVVFTDSMGGLADEWITQMDPQGTISQRVYRDGTRYIDGKYVKDLSALNRPLEQTLIIDDNADCISMQPENAIKVKAFSLDDGSDPTADTTLYDLAPFLRALATQGVADFRDVLRPHVGEDSNAVVAD----FRSKVNAVRQKEDAEKNKGLGGLVR 651
++ P ++KLL D P+P P PP P LVLDLE TL+ + ++RK GWR AKRPG+D FL+ + Q YEIV+F S +A+E + ++DP+ + RD TRY+ G +VKDL+ LNR L Q +I+DD+ +QPENAI +K F+ D D L +L PFL+ALA++ V DFR VL ED V+ D + ++V A+ +++ EK KGLGG +R
Sbjct: 140 FTDPSREKLLPDWPIPQVPADTPPVPVLVLDLEDTLVHSEWSRKHGWRHAKRPGVDEFLETLCQYYEIVIF--SQNPMAEEVVMKLDPKQCALHILSRDATRYLKGAHVKDLANLNRDLRQVVIVDDDPAAYQLQPENAIPIKPFTNGSARD---DRELTELIPFLKALASERVPDFRTVLGEFRDEDG--VIRDLPSRYSARVRALEMQKEQEKQKGLGGFIR 356
BLAST of mRNA_Ecto-sp9_F_contig8965.17156.1 vs.
Match: Queuosine (salvage protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BJH2_PYTIN) HSP 1 Score: 176 bits (446), Expect = 2.990e-47 Identity = 101/222 (45.50%), Postives = 142/222 (63.96%), Query Frame = 1
Query: 1 YSSPVKDKLLLDCPLP---PGALPPPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMSQLYEIVVFTDSMGGLADEWITQMDPQGTISQRVYRDGTRYIDGKYVKDLSALNRPLEQTLIIDDNADCISMQPENAIKVKAFSLDDGSDPTADTTLYDLAPFLRALATQGVADFRDVLRPHVGEDS--NAVVADFRSKVNAVRQKEDAEKNKGLGGLVR 651
++ P KDKLL D P+P P P P LVLDLE TL+ + ++RK GWR AKRPG+D FL+ ++Q YEIVVF+++ +AD+ +T++D + T+ + R+ TRY +G +VKDLS LNR L +IIDD+ +QPENAI +K + DG D D L DL PFL+ALA++ + DFR VL ED + A + S+V A ++ E+ KGLGG +R
Sbjct: 479 WTEPSKDKLLPDWPIPQVPPDTPPVPVLVLDLEDTLVHSEWSRKHGWRHAKRPGVDEFLETLAQYYEIVVFSNNHQFMADDVVTRLDRKQTVLHILARESTRYYNGAHVKDLSKLNRDLRHVVIIDDDPLAYQLQPENAIPIKPYM--DGRDRD-DHELKDLIPFLKALASERIPDFRTVLAEFRDEDGVVRDLPAKYASRVRAQELQQQQERQKGLGGFLR 697 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8965.17156.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig8965.17156.1 >prot_Ecto-sp9_F_contig8965.17156.1 ID=prot_Ecto-sp9_F_contig8965.17156.1|Name=mRNA_Ecto-sp9_F_contig8965.17156.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=254bp YSSPVKDKLLLDCPLPPGALPPPTLVLDLEGTLLGTIYTRKKGWRVAKRPback to top mRNA from alignment at Ecto-sp9_F_contig8965:612..3330+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig8965.17156.1 ID=mRNA_Ecto-sp9_F_contig8965.17156.1|Name=mRNA_Ecto-sp9_F_contig8965.17156.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2719bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8965:612..3330+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8965:612..3330+ >mRNA_Ecto-sp9_F_contig8965.17156.1 ID=mRNA_Ecto-sp9_F_contig8965.17156.1|Name=mRNA_Ecto-sp9_F_contig8965.17156.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1524bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8965:612..3330+ (Ectocarpus species9 EcSCA_722f female)back to top |