mRNA_Ecto-sp9_F_contig8964.17155.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8964.17155.1
Unique NamemRNA_Ecto-sp9_F_contig8964.17155.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8964.17155.1 vs.
Match: Putative (Mn/Fe superoxide dismutase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ80_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 4.950e-9
Identity = 54/60 (90.00%), Postives = 55/60 (91.67%), Query Frame = 1 
Query:    1 PRCSSWNVFFRQLAALLARRSQALLNKSPXXXXXXXXXXXXXXXXXXXXXXAACGSVCGD 180
            PRCSSWNVFFRQ+AALLARRSQALLNK  XXXXXXXXXXXXXXXXXXX   AACGSVCGD
Sbjct:  275 PRCSSWNVFFRQMAALLARRSQALLNKXXXXXXXXXXXXXXXXXXXXXDR-AACGSVCGD 333
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8964.17155.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Putative4.950e-990.00Mn/Fe superoxide dismutase n=1 Tax=Ectocarpus sili... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8964contigEcto-sp9_F_contig8964:5243..5581 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size339
Cds size339
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930955.7617252-CDS-Ecto-sp9_F_contig8964:5242..55811622930955.7617252-CDS-Ecto-sp9_F_contig8964:5242..5581Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8964 5243..5581 -
1692278966.0337129-CDS-Ecto-sp9_F_contig8964:5242..55811692278966.0337129-CDS-Ecto-sp9_F_contig8964:5242..5581Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8964 5243..5581 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8964.17155.1prot_Ecto-sp9_F_contig8964.17155.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8964 5243..5581 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8964.17155.1

>prot_Ecto-sp9_F_contig8964.17155.1 ID=prot_Ecto-sp9_F_contig8964.17155.1|Name=mRNA_Ecto-sp9_F_contig8964.17155.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=113bp
PRCSSWNVFFRQLAALLARRSQALLNKSPTTPAAAAGGCSGGGGGGGGGD
RAACGSVCGDASINAGGGGGGGGSAGDASGGPPPPEFAPKLFVVLDNAEA
LLSETVAGIGAS*
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mRNA from alignment at Ecto-sp9_F_contig8964:5243..5581-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8964.17155.1 ID=mRNA_Ecto-sp9_F_contig8964.17155.1|Name=mRNA_Ecto-sp9_F_contig8964.17155.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=339bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8964:5243..5581- (Ectocarpus species9 EcSCA_722f female)
CCGAGGTGCTCCTCCTGGAACGTCTTCTTCCGGCAGCTGGCGGCGCTGCT
AGCCCGGCGCAGCCAGGCCTTGCTCAACAAGAGCCCCACGACCCCCGCCG
CCGCCGCCGGTGGCTGTAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGAC
AGGGCGGCTTGCGGTAGCGTTTGCGGCGACGCGAGTATCAACGCCGGTGG
CGGTGGCGGTGGCGGTGGCAGCGCAGGCGACGCGAGTGGCGGACCCCCCC
CTCCAGAGTTCGCCCCCAAGCTGTTCGTCGTTCTGGACAACGCAGAGGCG
TTGCTGAGCGAGACGGTGGCCGGCATTGGGGCGAGTTAA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8964:5243..5581-

>mRNA_Ecto-sp9_F_contig8964.17155.1 ID=mRNA_Ecto-sp9_F_contig8964.17155.1|Name=mRNA_Ecto-sp9_F_contig8964.17155.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=678bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8964:5243..5581- (Ectocarpus species9 EcSCA_722f female)
CCGAGGTGCTCCTCCTGGAACGTCTTCTTCCGGCAGCTGGCGGCGCTGCT
AGCCCGGCGCAGCCAGGCCTTGCTCAACAAGAGCCCCACGACCCCCGCCG
CCGCCGCCGGTGGCTGTAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGAC
AGGGCGGCTTGCGGTAGCGTTTGCGGCGACGCGAGTATCAACGCCGGTGG
CGGTGGCGGTGGCGGTGGCAGCGCAGGCGACGCGAGTGGCGGACCCCCCC
CTCCAGAGTTCGCCCCCAAGCTGTTCGTCGTTCTGGACAACGCAGAGGCG
TTGCTGAGCGAGACGGTGGCCGGCATTGGGGCGAGTTAACCGAGGTGCTC
CTCCTGGAACGTCTTCTTCCGGCAGCTGGCGGCGCTGCTAGCCCGGCGCA
GCCAGGCCTTGCTCAACAAGAGCCCCACGACCCCCGCCGCCGCCGCCGGT
GGCTGTAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGACAGGGCGGCTTG
CGGTAGCGTTTGCGGCGACGCGAGTATCAACGCCGGTGGCGGTGGCGGTG
GCGGTGGCAGCGCAGGCGACGCGAGTGGCGGACCCCCCCCTCCAGAGTTC
GCCCCCAAGCTGTTCGTCGTTCTGGACAACGCAGAGGCGTTGCTGAGCGA
GACGGTGGCCGGCATTGGGGCGAGTTAA
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