mRNA_Ecto-sp9_F_contig8959.17148.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8959.17148.1
Unique NamemRNA_Ecto-sp9_F_contig8959.17148.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig8959.17148.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPZ2_ECTSI)

HSP 1 Score: 510 bits (1313), Expect = 3.360e-175
Identity = 252/257 (98.05%), Postives = 254/257 (98.83%), Query Frame = 3
Query:    3 RVHLDEFTAMAESYQAARANTPETLNGVDVYFFVADFGQNQLPFQRLGLQTVPKILHFPPALAEGDDGRYAIDQSQHMHMAGQVKAEDMARFVKEKTGVSFPIVRPEPPVMIILVGLLVVAALAIKPILSNLGALLRVIRNKYLWLATSLLVYTFGISGGVYDIIRNPAPFMVKQDASIMWFHPQSNVQFVAEGFITGIMTLMCGLSGILLVHVAPKLRNSGYRQVAVCVCGVIFLMLFSKVMSLYKSKNMWYRPVF 773
            RVHLDEFT MAESYQAARANTPETLNGVDVYFFVADFGQNQLPFQ+LGLQTVPKILHFPPALAEGDDGRYAIDQSQHMHMAGQVKAEDMARFVKEKTGVSFPI+RPEPPVMIILVGLLVVAALAIKPILSNLGALLRVIRNKYLWLATSLLVYTFGISGGVYDIIRNPAPFMVKQD  IMWFHPQSNVQFVAEGFITGIMTLMCGLSGILLVHVAPKLRNSGYRQVAVCVCGVIFLMLFSKVMSLYKSKNMWYRPVF
Sbjct:  103 RVHLDEFTTMAESYQAARANTPETLNGVDVYFFVADFGQNQLPFQKLGLQTVPKILHFPPALAEGDDGRYAIDQSQHMHMAGQVKAEDMARFVKEKTGVSFPIIRPEPPVMIILVGLLVVAALAIKPILSNLGALLRVIRNKYLWLATSLLVYTFGISGGVYDIIRNPAPFMVKQDGFIMWFHPQSNVQFVAEGFITGIMTLMCGLSGILLVHVAPKLRNSGYRQVAVCVCGVIFLMLFSKVMSLYKSKNMWYRPVF 359          
BLAST of mRNA_Ecto-sp9_F_contig8959.17148.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UY50_9STRA)

HSP 1 Score: 184 bits (467), Expect = 2.770e-49
Identity = 101/252 (40.08%), Postives = 146/252 (57.94%), Query Frame = 3
Query:   18 EFTAMAESYQAARANTPETLNGVDVYFFVADFGQNQLPFQRLGLQTVPKILHFPPALAEGDDGRYAIDQSQHMHMAGQVKAEDMARFVKEKTGVSFPIVRPEPPVMIILVGLLVVAALAIKPILSNLGALLRVIRNKYLWLATSLLVYTFGISGGVYDIIRNPAPFMVK-QDASIMWFHPQSNVQFVAEGFITGIMTLMCGLSGILLVHVAPKLRNSGYRQVAVCVCGVIFLMLFSKVMSLYKSKNMWYRPV 770
            E++ +A SY+A  AN          +F V D    +  FQ    Q VP++L+ PP    G + +Y +D+ +      +  AED+A ++  +TG    IVR     ++ LV L V AA   +PI+  L  ++ ++RNK LWL  SL +YT  ISG +YDIIRNPAPF +  Q   I++FHPQ+N QFV EGFI G + L C LS I+L    PK++++  R  A+ +C + F+ LF  VMSLY+SKN WY  +
Sbjct:   93 EYSVLASSYRAHVANAGA--RNPPTFFTVVDVDGARATFQNYAFQQVPQLLYIPPY--SGQESKYVVDKKRAFGFTSKPTAEDLATWLHTQTGDRVHIVRSTTRAVLTLVLLAVGAACLARPIIHRLPTIINLLRNKMLWLLVSLGMYTCSISGMIYDIIRNPAPFFMNHQTGQIVFFHPQANSQFVVEGFIIGGLNLGCALSVIVLATYVPKIKHTQNRSTAIGICTMAFVCLFYTVMSLYRSKNKWYMRI 340          
BLAST of mRNA_Ecto-sp9_F_contig8959.17148.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXZ8_HETAK)

HSP 1 Score: 167 bits (422), Expect = 6.520e-43
Identity = 94/254 (37.01%), Postives = 138/254 (54.33%), Query Frame = 3
Query:   12 LDEFTAMAESYQAARANTPETLNGVDVYFFVADFGQNQLPFQRLGLQTVPKILHFPPALAEGDDGRYAIDQSQHMHMAGQVKAEDMARFVKEKTGVSFPIVRPEPPVMIILVGLLVVAALAIKPILSNLGALLRVIRNKYLWLATSLLVYTFGISGGVYDIIRNPAPF-MVKQDASIMWFHPQSNVQFVAEGFITGIMTLMCGLSGILLVHVAPKLRNSGYRQVAVCVCGVIFLMLFSKVMSLYKSKNMWYRPV 770
            LD F   A SY+A      +T+ G +++F   D    +  FQR   +TVP++   PP+ A      Y  D S         +AE  ARFV+ + GV F IVR     ++ L  LL     A++PIL+ +   LR++R K +W+   L +YT  ISG +YDIIRNP P+ M  Q   I +FHPQSN QFVAEGFI G + +   ++ IL+V    + ++   +   V +C  +F++L   ++SLY+ KN WY  V
Sbjct:   90 LDAFKEAAASYKATLG---DTMRGDEIFFIAVDIDSAKNTFQRFQFKTVPQVFVIPPSTAGLP--AYTADPSASFLPDAHPEAEKFARFVERQLGVKFQIVRSNTRALMTLFALLGAMVAAVRPILNRIDFFLRLVRKKAIWMVVCLGLYTTSISGMIYDIIRNPPPYYMNHQTGQINFFHPQSNQQFVAEGFIIGFLNVGAAIALILMVTQMKRFKDPQNKSTFVGICYAVFVILLYTIISLYRVKNRWYMRV 338          
BLAST of mRNA_Ecto-sp9_F_contig8959.17148.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB15_9STRA)

HSP 1 Score: 159 bits (403), Expect = 1.420e-41
Identity = 85/221 (38.46%), Postives = 130/221 (58.82%), Query Frame = 3
Query:  102 VADFGQNQLPFQRLGLQTVPKILHFPPALAEGDDGRYAIDQSQHMHMAGQVKAEDMARFVKEKTGVSFPIVRPEPPVMIILVGLLVVAALAIKPILSNLGALLRVIRNKYLWLATSLLVYTFGISGGVYDIIRNPAPFMVK-QDASIMWFHPQSNVQFVAEGFITGIMTLMCGLSGILLVHVAPKLRNSGYRQVAVCVCGVIFLMLFSKVMSLYKSKNMWY 761
            VAD   N+  FQ   LQ+VP++ HF P  A G    +   Q+  M +     AED+A+FV +KTG  + I R +    + L+ LL+    A++  ++N+  +LRV+R+  LWL  SLLVYTF ISG ++DIIR+P PF++  Q    ++F PQ N Q+V EGFI GI+ L     G+++V +AP+++    RQ        +F +LF+  +++Y  KN WY
Sbjct:    2 VADVDLNRKVFQGYELQSVPQVAHFAPEAAPGAGAGWP--QADMMPVTKLFTAEDIAQFVGDKTGFRYTIYRSQFAARMALLALLLFLVGALRTAITNVALVLRVVRSPTLWLVVSLLVYTFSISGAIFDIIRSPPPFVISAQTRKPVYFSPQPNSQYVVEGFIVGILNLTTAFCGMVVVAIAPRIKARALRQTVTLAAAALFGLLFALSVTIYTWKNRWY 220          
BLAST of mRNA_Ecto-sp9_F_contig8959.17148.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTC6_PYTOL)

HSP 1 Score: 147 bits (372), Expect = 8.860e-36
Identity = 90/255 (35.29%), Postives = 138/255 (54.12%), Query Frame = 3
Query:   18 EFTAMAESYQAARANTPETLNGVDVYFFVADFGQNQLPFQRLGLQTVPKILHFPPALAEGDDGRYAIDQSQ-------HMHMAGQVKAEDMARFVKEKTGVSFPIVRPEPPVMIILVGLLVVAALAIKPILSNLGALLRVIRNKYLWLATSLLVYTFGISGGVYDIIRNPAPFMVKQDASIMWFHPQSNVQFVAEGFITGIMTLMCGLSGILLVHVAPKLRNSGYRQVAVCVCGVIFLMLFSKVMSLYKSKNMWY 761
            EF  +AESY +A+    +T +G+DVY+ + DF +NQ  F   G  + P I +  P   E D G+ A  + +       +++  G+ +AE + +FVK+KTG  F I R +  +  ++  +L V  +++K ILSNL  +L  +R + LW+  SLL Y   +SG VY IIR P  +  ++   I +FHP    QFV EG I G   +M     ILL   A  L+N   R  A+ +C   FL ++ +++S Y  KN WY
Sbjct:   95 EFHTLAESYVSAKQVKVDTRDGLDVYYGIVDFDENQQVFGLHGFTSAPHIGYIGPDRTE-DTGKRAPSKVEIPTHDMYNVYQDGK-QAESIIKFVKQKTGFEFEIQRSKAFLYAVVGAVLSVFLISVKIILSNLNLVLDKLRRRRLWMTVSLLFYGLSVSGMVYCIIREPPAYTTERGGKIKFFHPAGRSQFVVEGLIVGAYDVMAAGFVILLSQWAVYLKNPVLRYSALMICMSGFLFMYRQMISAYMFKNRWY 347          
BLAST of mRNA_Ecto-sp9_F_contig8959.17148.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXY0_HETAK)

HSP 1 Score: 144 bits (362), Expect = 1.740e-34
Identity = 94/255 (36.86%), Postives = 137/255 (53.73%), Query Frame = 3
Query:   12 LDEFTAMAESYQAARANTPETLNGVDVYFFVADFGQNQLPFQRLGLQTVPKILHFPPALAEGDDGRYAIDQSQHMHMAGQVKAEDMARFVKEKTGVSFPIVRPEPPVMIILVGLLVVAALAIKPILSNLGALLRVIRNKYLWLATSLLVYTFGISGGVYDIIRNPAPF-MVKQDASIMWFHPQSNVQFVAEGFITGIMTLMCGLSGILLV-HVAPKLRNSGYRQVAVCVCGVIFLMLFSKVMSLYKSKN---MWY 761
            LD F   A SY+A      +T+ G +++F   D    +  FQR   +TVP++   PP+ A      Y  D S         +AE  ARFV+ + GV F IVR     ++ L  LL     A++PIL+ +   LR++R K +W+   L +YT  ISG +YDIIRNP P+ M  Q   I +FHPQSN QFVAEGFI G + +   ++ IL+V  V P L +S +  ++  V  ++ +M  +   SL+ S N   +WY
Sbjct:   90 LDAFKEAAASYKATLG---DTMRGDEIFFIAVDIDSAKNTFQRFQFKTVPQVFVIPPSTAGLP--AYTADPSASFLPDAHPEAEKFARFVERQLGVKFQIVRSNTRALMTLFALLGAMVAAVRPILNRIDFFLRLVRKKAIWMVVCLGLYTTSISGMIYDIIRNPPPYYMNHQTGQINFFHPQSNQQFVAEGFIIGFLNVGAAIALILMVTQVTPHLPSS-HSLLSSSVSFLVHIM-DTHFPSLHTSLNIVDLWY 337          
BLAST of mRNA_Ecto-sp9_F_contig8959.17148.1 vs.
Match: Uncharacterized (protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RX65_9ARCH)

HSP 1 Score: 137 bits (346), Expect = 1.500e-32
Identity = 86/259 (33.20%), Postives = 137/259 (52.90%), Query Frame = 3
Query:   18 EFTAMAESY-QAARANTPETLNGVDVYFFVADFGQNQLPFQRLGLQTVPKILHFPPALAEGDDGRYAIDQS-----QHMHMAGQVKAEDMARFVKEKTGVSFPIVRPEPPVMIILVGLLVVAALAIKPILSNLGALLRVIRNKYLWLATSLLVYTFGISGGVYDIIRNPAPFMVK-QDASIMWFHPQSNVQFVAEGFITGIMTLMCGLSGILLVHVAPKLRNSGYRQVAVCVCGVIFLMLFSKVMSLYKSKNMWYRPVF 773
            E   +A SY + A+A   E      ++F   D+  +Q  F      +VP + +  P+   G  G   +D S         +     AE +A FV+++ GV+  I R +    + +V    + AL ++P++S +  +LR++RN  LW   SL VYT  ISG ++DIIR P  + V  Q   +++F+P S  QFVAEGF+ G + ++C LS IL   VA +L+++ +R  AV  C ++F++ F  V +LY  KN WY   F
Sbjct:   65 ELQLLASSYMKQAQARREEPR----IFFVRLDYEASQKTFAAYDAASVPVVFYIAPSSGLGGTG--GVDGSPPSARDRYQVPPDPSAEGLAGFVRDRAGVAVDIQRSKLLAYVFIVVAFSLLALLVRPLISFMPRILRLLRNSALWAVVSLGVYTCAISGLIFDIIRTPPLYHVNGQTGQLLFFYPHSGSQFVAEGFVIGGLNVLCALSLILASGVALRLKDAQHRTAAVLACLLVFIVSFRSVRALYVMKNNWYGARF 317          
BLAST of mRNA_Ecto-sp9_F_contig8959.17148.1 vs.
Match: Uncharacterized (protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z5K1_9STRA)

HSP 1 Score: 137 bits (345), Expect = 3.190e-32
Identity = 83/258 (32.17%), Postives = 133/258 (51.55%), Query Frame = 3
Query:   18 EFTAMAESYQAARANTPETLNGVDVYFFVADFGQNQLPFQRLGLQTVPKILHFPPALAEGDDGR-----YAIDQSQHMHMAGQVKAED-MARFVKEKTGVSFPIVRPEPPVMIILVGLLVVAALAIKPILSNLGALLRVIRNKYLWLATSLLVYTFGISGGVYDIIRNPAPFMVKQDASIMWFHPQSNVQFVAEGFITGIMTLMCGLSGILLVHVAPKLRNSGYRQVAVCVCGVIFLMLFSKVMSLYKSKNMWYRPVF 773
            EFT +AES  AA+    +   G+D++F V DF QNQ  +   G  + P++++  P   E D G+       +  +Q   +  Q K+ D M  +VK+KTGV   ++R +     I   ++++  L ++ + +N   ++  +R K +WLA S L Y   +SG VY IIR P  F  +++  I +FHPQ   QFV EG I G   L   +  I++   A  ++N   R V +  C   FL+ + +++S Y  KN WY   F
Sbjct:   84 EFTVLAESVLAAQEPARD---GLDIFFGVVDFDQNQGAYGIHGFTSAPQLIYIGPDRTE-DAGKNLPTKIELPANQIYSVYTQGKSADAMINYVKDKTGVDAAVIRSKLFAYAIAASVMLILGLIVRSVYTNFDLVMNRLRRKRVWLAISFLFYGLSVSGMVYCIIREPPAFSQERNGKITFFHPQGRQQFVVEGLIVGGYDLTAAICVIVMSQFAVTIKNGPLRYVILSACLAGFLVAYRQMVSAYAFKNPWYESWF 337          
BLAST of mRNA_Ecto-sp9_F_contig8959.17148.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BYS9_PYTIN)

HSP 1 Score: 134 bits (337), Expect = 4.500e-29
Identity = 92/257 (35.80%), Postives = 133/257 (51.75%), Query Frame = 3
Query:   18 EFTAMAESYQAARANTPETLNGVDVYFFVADFGQNQLPFQRLGLQTVPKILHFPPALAEGDDGRYAI--------DQSQHMHMAGQVKAEDMARFVKEKTGVSFPIVRPEP----PVMIILVGLLVVAALAIKPILSNLGALLRVIRNKYLWLATSLLVYTFGISGGVYDIIRNPAPFMVKQDASIMWFHPQSNVQFVAEGFITGIMTLMCGLSGILLVHVAPKLRNSGYRQVAVCVCGVIFLMLFSKVMSLYKSKN 752
            EF  +AESY A +  +  T +G+DVYF V DF QNQ  F   G  + P I +  P   E D G+ A         D     H+  Q  AE++  FV +KTG  F I R +      +++ LV LL++A    K +L+NL  +L  +R K LW+  SLL Y   +SG VY IIR P  +  +++  I +FHP    QFV EG I G + +M     ILL   A  L+    R  A+  C   F++++ ++++ Y SKN
Sbjct:  101 EFHTLAESYLAGKQASVTTRDGLDVYFGVVDFDQNQQVFGVYGFTSAPHIGYVGPDRNE-DTGKRAPSKVTFPAEDMYNIYHLGKQ--AENIVGFVTQKTGADFVIQRSKAFLYGLIVVTLVSLLIIA----KIVLANLDKVLARLRRKRLWMTVSLLFYGLSVSGMVYCIIREPPAYTTERNGKIKYFHPGGRSQFVVEGLIIGGLDVMAAGFVILLSQWAIYLQRPYLRYPAILACMAGFVVMYRQMIAAYISKN 350          
BLAST of mRNA_Ecto-sp9_F_contig8959.17148.1 vs.
Match: Uncharacterized (protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G8I4_9STRA)

HSP 1 Score: 114 bits (284), Expect = 6.830e-24
Identity = 77/253 (30.43%), Postives = 120/253 (47.43%), Query Frame = 3
Query:   30 MAESYQAARANTPETLNGVDVYFFVADFGQNQLPFQRLGLQTVPKILHFPPALAEGDDGRYAIDQSQHMHMAGQVK-------AEDMARFVKEKTGVSFPIVRPEPPV-MIILVGLLVVAALAIKPILSNLGALLRVIRNKYLWLATSLLVYTFGISGGVYDIIRNPAPFMVKQDASIMWFHPQSNVQFVAEGFITGIMTLMCGLSGILLVHVAPKLRNSGYRQVAVCVCGVIFLMLFSKVMSLYKSKNMWYR 764
            + +S+  A      + +G+ ++F  ADF      FQ   + TVP I +  P L E  D   A+ +   +     +        A+D+  FV  KTG    ++  +  + M++  GL V+  +       N   +L  IR K LW+  SLL Y   +SG VY IIRNPAP+ + Q   I +FHP    QFV EG I G + +M     IL+   A  L+    R  A   C   F++++  +++ Y +KN WY+
Sbjct:  101 IVKSHSLAAQTELSSHDGLPIFFMEADFDSCSDIFQIHDVTTVPFIFYIAPNLDE--DTNEALPKKMEIRKRDMLSFGTSGRPADDLREFVARKTGFEIVLLESKTTLYMLVASGLAVIFVVGFIAA-RNTDFILSRIRRKALWMTVSLLFYGLSVSGMVYCIIRNPAPYHMTQKG-IQYFHPDGRSQFVYEGLIVGGLDIMAAFWIILMSQWAIYLKKPYVRLPATIFCAAGFIIMYKAMITCYSAKNRWYK 349          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8959.17148.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized3.360e-17598.05protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPZ2... [more]
Hypothetical2.770e-4940.08protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Hypothetical6.520e-4337.01protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
Uncharacterized1.420e-4138.46protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Uncharacterized8.860e-3635.29protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
Hypothetical1.740e-3436.86protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
Uncharacterized1.500e-3233.20protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A48... [more]
Uncharacterized3.190e-3232.17protein n=1 Tax=Thraustotheca clavata TaxID=74557 ... [more]
Uncharacterized4.500e-2935.80protein n=1 Tax=Pythium insidiosum TaxID=114742 Re... [more]
Uncharacterized6.830e-2430.43protein n=1 Tax=Albugo candida TaxID=65357 RepID=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8959contigEcto-sp9_F_contig8959:683..5035 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score490.0
Seed ortholog evalue6.7e-136
Seed eggNOG ortholog2880.D8LPZ2
Preferred nameOST3
KEGG koko:K12669,ko:K19478
KEGG TC9.A.45.1.1,9.A.45.1.2,9.A.45.1.3,9.A.45.1.4,9.A.45.1.6
KEGG Pathwayko00510,ko00513,ko01100,ko04141,map00510,map00513,map01100,map04141
KEGG ModuleM00072
GOsGO:0000003,GO:0003674,GO:0003824,GO:0004576,GO:0004579,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005886,GO:0006464,GO:0006486,GO:0006487,GO:0006493,GO:0006807,GO:0008150,GO:0008152,GO:0008250,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009507,GO:0009536,GO:0009856,GO:0009987,GO:0010483,GO:0012505,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0016758,GO:0018193,GO:0018196,GO:0018279,GO:0019538,GO:0022414,GO:0031224,GO:0031984,GO:0032501,GO:0032991,GO:0034645,GO:0035268,GO:0035269,GO:0036211,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044706,GO:0051703,GO:0051704,GO:0070085,GO:0071704,GO:0071944,GO:0097502,GO:0098796,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.protein N-linked glycosylation via asparagine
EggNOG OGsKOG2603@1,KOG2603@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-15_001580.1
Exons7
Model size1850
Cds size747
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930954.6195476-UTR-Ecto-sp9_F_contig8959:682..7111622930954.6195476-UTR-Ecto-sp9_F_contig8959:682..711Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8959 683..711 +
1692278965.4111307-UTR-Ecto-sp9_F_contig8959:682..7111692278965.4111307-UTR-Ecto-sp9_F_contig8959:682..711Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8959 683..711 +
1622930954.7462947-UTR-Ecto-sp9_F_contig8959:3961..50351622930954.7462947-UTR-Ecto-sp9_F_contig8959:3961..5035Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8959 3962..5035 +
1692278965.5030425-UTR-Ecto-sp9_F_contig8959:3961..50351692278965.5030425-UTR-Ecto-sp9_F_contig8959:3961..5035Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8959 3962..5035 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930954.6340764-CDS-Ecto-sp9_F_contig8959:711..8221622930954.6340764-CDS-Ecto-sp9_F_contig8959:711..822Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8959 712..822 +
1692278965.4273334-CDS-Ecto-sp9_F_contig8959:711..8221692278965.4273334-CDS-Ecto-sp9_F_contig8959:711..822Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8959 712..822 +
1622930954.6487405-CDS-Ecto-sp9_F_contig8959:1116..12921622930954.6487405-CDS-Ecto-sp9_F_contig8959:1116..1292Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8959 1117..1292 +
1692278965.4383857-CDS-Ecto-sp9_F_contig8959:1116..12921692278965.4383857-CDS-Ecto-sp9_F_contig8959:1116..1292Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8959 1117..1292 +
1622930954.6642787-CDS-Ecto-sp9_F_contig8959:1662..17451622930954.6642787-CDS-Ecto-sp9_F_contig8959:1662..1745Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8959 1663..1745 +
1692278965.4488122-CDS-Ecto-sp9_F_contig8959:1662..17451692278965.4488122-CDS-Ecto-sp9_F_contig8959:1662..1745Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8959 1663..1745 +
1622930954.6780415-CDS-Ecto-sp9_F_contig8959:2021..21791622930954.6780415-CDS-Ecto-sp9_F_contig8959:2021..2179Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8959 2022..2179 +
1692278965.4584236-CDS-Ecto-sp9_F_contig8959:2021..21791692278965.4584236-CDS-Ecto-sp9_F_contig8959:2021..2179Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8959 2022..2179 +
1622930954.69056-CDS-Ecto-sp9_F_contig8959:2727..28111622930954.69056-CDS-Ecto-sp9_F_contig8959:2727..2811Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8959 2728..2811 +
1692278965.4681606-CDS-Ecto-sp9_F_contig8959:2727..28111692278965.4681606-CDS-Ecto-sp9_F_contig8959:2727..2811Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8959 2728..2811 +
1622930954.7173245-CDS-Ecto-sp9_F_contig8959:3511..35951622930954.7173245-CDS-Ecto-sp9_F_contig8959:3511..3595Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8959 3512..3595 +
1692278965.4787033-CDS-Ecto-sp9_F_contig8959:3511..35951692278965.4787033-CDS-Ecto-sp9_F_contig8959:3511..3595Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8959 3512..3595 +
1622930954.7315586-CDS-Ecto-sp9_F_contig8959:3910..39611622930954.7315586-CDS-Ecto-sp9_F_contig8959:3910..3961Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8959 3911..3961 +
1692278965.4911156-CDS-Ecto-sp9_F_contig8959:3910..39611692278965.4911156-CDS-Ecto-sp9_F_contig8959:3910..3961Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8959 3911..3961 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8959.17148.1prot_Ecto-sp9_F_contig8959.17148.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8959 712..3961 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8959.17148.1

>prot_Ecto-sp9_F_contig8959.17148.1 ID=prot_Ecto-sp9_F_contig8959.17148.1|Name=mRNA_Ecto-sp9_F_contig8959.17148.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=249bp
MAESYQAARANTPETLNGVDVYFFVADFGQNQLPFQRLGLQTVPKILHFP
PALAEGDDGRYAIDQSQHMHMAGQVKAEDMARFVKEKTGVSFPIVRPEPP
VMIILVGLLVVAALAIKPILSNLGALLRVIRNKYLWLATSLLVYTFGISG
GVYDIIRNPAPFMVKQDASIMWFHPQSNVQFVAEGFITGIMTLMCGLSGI
LLVHVAPKLRNSGYRQVAVCVCGVIFLMLFSKVMSLYKSKNMWYRPVF*
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mRNA from alignment at Ecto-sp9_F_contig8959:683..5035+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8959.17148.1 ID=mRNA_Ecto-sp9_F_contig8959.17148.1|Name=mRNA_Ecto-sp9_F_contig8959.17148.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4353bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8959:683..5035+ (Ectocarpus species9 EcSCA_722f female)
GCAGGGTGCACCTCGACGAGTTCACGGCCATGGCGGAGTCATACCAGGCG GCGCGCGCCAACACCCCCGAGACGTTGAACGGCGTCGACGTCTACTTCTT CGTTGCCGACTTCGGCCAGAACCAGTTGCCGTTCCAAAGGGTGGGTCTGT GGTGGTTTGCTTGCTTGCTCTGTGGGTGCGATCTATGTTGTTGGGTGATG CTGTTGGTAGCTGTGTCTGGGGAACGTCTCGAAGCTGCCCCGCTTTTTTG GGCGCGGGGGCGCGCGGGGCTAGCACTTGCGCAATTCGGCGTGCTTTTTC CAGACTGAGGGTGAGTTCCTGCGCGGCTCCACGCGCGGAAGGCCAGCTCA GTTTTGAAGAAATTTGATTCGTGTACGTTTCTCCGCGCGCCTCTCTGACC CCCCCTCCCCCCCCCATCCCTTCTGTCTCTCCAGCTGGGCCTCCAGACAG TCCCGAAGATTCTGCACTTCCCCCCGGCGCTGGCGGAGGGGGACGACGGC CGCTACGCGATAGACCAGTCCCAGCACATGCACATGGCTGGCCAGGTGAA GGCCGAAGACATGGCGCGATTCGTGAAGGAGAAGACCGGCGTGTCCTTCC CTATCGTCAGGTGCGGCAGCCCCAAACCGTGTATTTCGTGGACTCTTGTT GTCTTCTGGTCCTTGCCTGTTTTTGTACCTGTGAGAAATACGTTGATGTG CGATTGTTTTGTGACATTGTTTTGTCTCTACAACGTGCGTCGTGGTGCGA TTGCTTCTGATAGCGTGTTGCCTCTACGTGTGTTGTGGTGCAATTTGTTT CTGACAGTGTTTCTTCTCTTCATCGTGTGTTGTTGTGCGATCGTTTTTGA GATTGTTTCGTCTCTAAAATCCTATGAAAATATATCCTATCGAAGTATAT CCTATGGAAATACATCATACCAGCCACCAAGGAACATGGAAATCGTGCGG GCGGGTTTTTTGCGTTTCGGTCTGACCCAGGCCGGAGCCCCCGGTGATGA TCATCCTGGTGGGGCTGTTGGTGGTGGCCGCCCTCGCTATCAAGCCGATT CTCTCCAACCTGGGTGAGACACCGTGCCGCCTTCAGCGGAACGAGTTTGT GCTCTATTTTCCTCCCTACGTATTCGGATACCAGCTGCGTTTTGCCTACC AGCGTCGTGCCGGCAATGCATACCCGCCCGTCGTGTCATGGTGTGTGTGC GGGCGTCCTCCTCCGGAGCATGGTTGACACCGGTTTCGCCCTCTTGCAGC GGTGTTGGGGAGCGTCTCGAGTATCCTCCCACCCCTTCCGCTCTTCCCCT ATTCGCCCTTCCATTCACGCCGCCTTTTACGTGTTCCAGGTGCTCTGCTC CGGGTCATTCGAAACAAGTACCTCTGGCTCGCCACATCGTTGTTGGTGTA CACGTTCGGTATTAGCGGGGGCGTGTACGATATCATCCGTAACCCCGCCC CGTTCATGGTAAAGCAAGACGCGTCCATCATGTGGTTCCATCCCCAGGTA CGTACGGTGTTCAACTTTTCAGAGACGTACCTTTTTTGGCCGTGTACGGG TACCCAAGGTCTACTATGGTGTTGTATGTAAAACTACCGCTGTGCTTGTT TGTAGTATCAGCTTAGGTGTACTCAGCACTAGATACGGATCTACGGAGAC CTAGGGGGTTTCGTGTATCATGTTGGTATGTGATACTGGAAGGGCAGACC CCCTTCTAGTGTGCAGGGCTTGCTTGCCCTGCTGTTCACTCGTGCATTCT CAAGGCCTTGAGTCAACCTTTTCTCCACAGTCTCGGACGCTAAGCACCCG CTACCCAACACGATGCTCTATAAGATTGGGGGAGCTGGTGCCACACCGAA CCTTGTCAGGGCCATTTTTGCTCTAACCGATTGAAATTCGACGGAGCCCA AGTTTGTTCGGATGGATGAAGCCGCCGTTGTGCGTACATTGGCACAGGCT TCCATCTCCAGTCGAAGCGCTGTTCCTTTACCCTCTCCTCCCCGTTGTTT CGCTCTCCTGGTCGTGCTGCTTCTATGCCGCTTTTGGCGATGCAGTCCAA TGTGCAGTTTGTGGCAGAGGGGTTCATCACCGGCATCATGACGCTCATGT GCGGGTTGTCGGGCATCCTCCTGGTTCATGTAAGTCGCTCAGCCCCCCCG CGCTCAGCTCGTTGCCCGGTGGTATGAGCGCGACGTTAGGGATTGCGTTG CCTTCACTGTGGAGTAACAGGTGCGGCGCGGTGTCGGCTGTTACGCAGGT GGTGATAGGAGTACAGACGCATCTACGGGGGCGTCTCTCTGTAGCCTCGA TATTCCCGCTTTCGTTTGTAGGAGCATTAAAACCGAAGATCATCGGAGAC TTGCGGAACAGTACTACTGTGTCCCCGCGGGCCGCCTGGATTCCGCACTT CCGTCGGCAACAATTAACCAAAAGGACTCATAAATAAAGCCTAAGGACTT CATGGCTCTTCTCGAAGAGGGGGGGGGTCGGCAACGAGAACTGACAAGCG TGAAAACGCGCTTCGAACTTCGTACGGCGTATTTTTCGATCCCGATCCCA TCCCGTAAAGGCTGACTTCGAACCCTCCTTTGCAACCCCACCGAATCATA TTACGAAGAGTAAAAATTCGGCCAAGAAGAATACTCCACGCCCCTAATCA TGCTCCGATCATGATATCCGGAGGTGGAACTGGTGAATTGTGCTTGGTTT CATGTGAACCCCTTCGCATGTGCCCCCCCCTTACCACTCTTGTTGCACTA GCACATCGACACGCTGTCGCACGCGCGCCTGCCCCGTCCCTGCCGCGTCT CGCTTGGTTGCGTCGTTTCTTGGTGACAGGTGGCGCCCAAGTTGAGAAAC AGTGGATACCGACAAGTCGCGGTCTGTGTTTGCGGAGTGATTTTCCTCAT GCTATTTTCCAAGGTGAGATTGTCTCGTGTCGTGTACCGCATTAACGGGA AACTTTGGTTTGTCGTCGGATTGTAACGGTTTGGAAGACAGATGGAGGGG TTTCGTTGCCGTTTACGCGAGAGGCGTGTTTGGCCTTTTCCTTTGTCGTT TCACAATGAGCACGTTCTGGACTGCTTCGTACGTGTCGTCATGAGCGTAG GCTTGAACTCCATCTCCAATGAGCATGTGGACGTTTTGTTTGCAGAAAAA GTGGCAAGGGCTCCTTGTCTCAACCCCCCCCGGCGCTCGTGTGTTTCTTT TTCTGGTTCTACTCGTGTTCGTGCCAAGGTAATGAGCCTGTACAAGTCAA AGAACATGTGGTACCGCCCTGTCTTCTGAGGGACTGGCTTGTGCTTCGGA GTCCTTGGGAAGGAGCTTCTTCCATGATACTCCGTATGTTGCTTCTTGAA CTTTTGTCCGGATCTTTCTTGACTGGCCCGAGAATGTGGTGTGTCCCATG CGACACCCGATCCCGGCGTGTGTGCTGTCTGGAGCTGGATTTGCACATCG TGTGTGTGTGTGTTTTGTGTCTTGAAAGGACATCTTCCAAGCTCACCGGC TGTTCAATGATACTGCATCAAGTCTTACTGGGTGTGTGCTGCGTGTGTGC ACCGCTACGCGCGTGTCGCCGCGGCAAGTTTGTCACGGCGTGAACCGGTT GAATTCATCCCACGCAGCACACCATAACCTTTAAGCTTTGCTGCCGATGC ACCGTAGTTGCTCATGACATGCGCTTTCCACTTACGCGGAGAACCTAAGC AAGTCAAGCCATCCCCGCCGCATGACAGTTGACGATTTTCGACGGTCGTC GCCGCCGCGTGAGGTCGGGGCAAGTTGACAAGCTTTTCTACGAGCTGTAT TTTGTGTTCGAGTTTAGCCCGCGGGCGCATGATGCATGGGGTATGCAAGG CGCATGGGTTTTAGAAAACTGCCATCGGGAATGACTTTCCGACTATTGTA GGAATCGCTGACGCGGGTTTCAGTCCCAGTGGGCCACCCTGGTGCACAAG ACCGGTTGGACCTTGTGCTACGTTGTAAACGGGCGTATCTCGAGATGGTT CCCAACGATTTCCTAAAAGTTCACGGTTTGTGTATGTGTAGAAACAGACT TGCTGTCAGTTTGCCCGGAGGACGGTTGTGGTTCGTCCTGAAGCCAATGA TAGCACACAAAGCCGCAGCTTGTGTTTGGCGGCTACGTTATCATGAAACA ATTTCGGGTCCGTACGTTCTGAATCGGTAGTCCCGGGCCTTCCCCCCGGC AATTGCGATGTTGAATGACGGAAGACATACGGTCAAGCAGCGGGACACGC ATCAGCGTGGTCACTGACTCATCGACAACACACTCCTAACGACAGCGAAT GTTTCAGAGCGTACTGCTGTATGTAGCATTTCCGCATGTCTACCTCTACC CAC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8959:683..5035+

>mRNA_Ecto-sp9_F_contig8959.17148.1 ID=mRNA_Ecto-sp9_F_contig8959.17148.1|Name=mRNA_Ecto-sp9_F_contig8959.17148.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1494bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8959:683..5035+ (Ectocarpus species9 EcSCA_722f female)
ATGGCGGAGTCATACCAGGCGGCGCGCGCCAACACCCCCGAGACGTTGAA
CGGCGTCGACGTCTACTTCTTCGTTGCCGACTTCGGCCAGAACCAGTTGC
CGTTCCAAAGGATGGCGGAGTCATACCAGGCGGCGCGCGCCAACACCCCC
GAGACGTTGAACGGCGTCGACGTCTACTTCTTCGTTGCCGACTTCGGCCA
GAACCAGTTGCCGTTCCAAAGGCTGGGCCTCCAGACAGTCCCGAAGATTC
TGCACTTCCCCCCGGCGCTGGCGGAGGGGGACGACGGCCGCTACGCGATA
GACCAGTCCCAGCACATGCACATGGCTGGCCAGGTGAAGGCCGAAGACAT
GGCGCGATTCGTGAAGGAGAAGACCGGCGTGTCCTTCCCTATCGTCAGCT
GGGCCTCCAGACAGTCCCGAAGATTCTGCACTTCCCCCCGGCGCTGGCGG
AGGGGGACGACGGCCGCTACGCGATAGACCAGTCCCAGCACATGCACATG
GCTGGCCAGGTGAAGGCCGAAGACATGGCGCGATTCGTGAAGGAGAAGAC
CGGCGTGTCCTTCCCTATCGTCAGGCCGGAGCCCCCGGTGATGATCATCC
TGGTGGGGCTGTTGGTGGTGGCCGCCCTCGCTATCAAGCCGATTCTCTCC
AACCTGGGCCGGAGCCCCCGGTGATGATCATCCTGGTGGGGCTGTTGGTG
GTGGCCGCCCTCGCTATCAAGCCGATTCTCTCCAACCTGGGTGCTCTGCT
CCGGGTCATTCGAAACAAGTACCTCTGGCTCGCCACATCGTTGTTGGTGT
ACACGTTCGGTATTAGCGGGGGCGTGTACGATATCATCCGTAACCCCGCC
CCGTTCATGGTAAAGCAAGACGCGTCCATCATGTGGTTCCATCCCCAGGT
GCTCTGCTCCGGGTCATTCGAAACAAGTACCTCTGGCTCGCCACATCGTT
GTTGGTGTACACGTTCGGTATTAGCGGGGGCGTGTACGATATCATCCGTA
ACCCCGCCCCGTTCATGGTAAAGCAAGACGCGTCCATCATGTGGTTCCAT
CCCCAGTCCAATGTGCAGTTTGTGGCAGAGGGGTTCATCACCGGCATCAT
GACGCTCATGTGCGGGTTGTCGGGCATCCTCCTGGTTCATTCCAATGTGC
AGTTTGTGGCAGAGGGGTTCATCACCGGCATCATGACGCTCATGTGCGGG
TTGTCGGGCATCCTCCTGGTTCATGTGGCGCCCAAGTTGAGAAACAGTGG
ATACCGACAAGTCGCGGTCTGTGTTTGCGGAGTGATTTTCCTCATGCTAT
TTTCCAAGGTGGCGCCCAAGTTGAGAAACAGTGGATACCGACAAGTCGCG
GTCTGTGTTTGCGGAGTGATTTTCCTCATGCTATTTTCCAAGGTAATGAG
CCTGTACAAGTCAAAGAACATGTGGTACCGCCCTGTCTTCTGAGTAATGA
GCCTGTACAAGTCAAAGAACATGTGGTACCGCCCTGTCTTCTGA
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