mRNA_Ecto-sp9_F_contig8955.17147.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8955.17147.1
Unique NamemRNA_Ecto-sp9_F_contig8955.17147.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8955.17147.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9W9_9PHAE)

HSP 1 Score: 356 bits (913), Expect = 1.360e-115
Identity = 223/405 (55.06%), Postives = 233/405 (57.53%), Query Frame = 1 
Query:    7 HQSQVFAEVVGASTVSVPDDEIEICLEAGFIMQLTTATVEGEDYYYNFDLVVPGRDSSSDLSVSAAPDEDAQAFICGELEELEDVVANAT-----------------------------------------------------------------------------------VADATA----------------------------------------------------------APVLPLPVETPAPSPAVRGLASPAPTSVGVDGXXXXXXXXXXXXXXXXXXXXXEGEGNNMEGQECMIPEEAPCTSTAATIAHTNQGVGSYYDPTCAAAXXXXXTASEEGELPEGCDPSSADSCRFCLFNTPRWQDKNPGEDLPDLVDCPCCVLDVYKEDTAISEDGVR 798
            ++SQVFAEVVGAS VSVP DEIEICLEAGFIMQLTTATVEGEDY+YNFDLVVPGRDSSSDLSVSAAPDEDAQAFICGELEELE+   +                                                                                     VA  T                                                           APVLPLPVETPAPSPAVRGLAS APTSVGVDG XXXXXXXX            EGEGNNMEGQECMIPE APCTSTA+T +HTNQGVGS+YDPTCAAA     TASEEGELPEGCDPSSADSCRFCLFNTPRWQDKNPGEDLPDLVDCPCCVLD+YKEDTAI+EDGVR
Sbjct:  239 YRSQVFAEVVGASAVSVPGDEIEICLEAGFIMQLTTATVEGEDYHYNFDLVVPGRDSSSDLSVSAAPDEDAQAFICGELEELEEPTPSPVXXXXXXXEPTEPPPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAPTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPVLPLPVETPAPSPAVRGLASSAPTSVGVDGGXXXXXXXXVAPTSVATSTG-EGEGNNMEGQECMIPEGAPCTSTASTFSHTNQGVGSFYDPTCAAAAA---TASEEGELPEGCDPSSADSCRFCLFNTPRWQDKNPGEDLPDLVDCPCCVLDIYKEDTAINEDGVR 639
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BLAST of mRNA_Ecto-sp9_F_contig8955.17147.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE44_ECTSI)

HSP 1 Score: 310 bits (795), Expect = 1.570e-102
Identity = 191/263 (72.62%), Postives = 193/263 (73.38%), Query Frame = 1 
Query:   10 QSQVFAEVVGASTVSVPDDEIEICLEAGFIMQLTTATVEGEDYYYNFDLVVPGRDSSSDLSVSAAPDEDAQAFICGELEELEDVVANATVADATAAPVLPLPVETPAPSPAVRGLASPAPTSVGVDGXXXXXXXXXXXXXXXXXXXXXEGEGNNMEGQECMIPEEAPCTSTAATIAHTNQGVGSYYDPTCAAAXXXXXTASEEGELPEGCDPSSADSCRFCLFNTPRWQDKNPGEDLPDLVDCPCCVLDVYKEDTAISEDGVR 798
            +SQVFAEVVGASTVSVPDDEIEICLEAGFIMQLTTATVE EDYYYNFDLVVPGRDSSSDLSVSAAP                                                             XXXXXXXXXXXXXXXXXXXXX   GNNMEGQECMIPEEAPCTSTAATIAHTNQGVGSYYDPTCAAA     TASEEGELPEGCDPSSADSCRFCLFNTPRWQDKNPGEDLPDLVDCPCCV+DVYKEDTAISEDGVR
Sbjct:   76 RSQVFAEVVGASTVSVPDDEIEICLEAGFIMQLTTATVEDEDYYYNFDLVVPGRDSSSDLSVSAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNNMEGQECMIPEEAPCTSTAATIAHTNQGVGSYYDPTCAAAAA---TASEEGELPEGCDPSSADSCRFCLFNTPRWQDKNPGEDLPDLVDCPCCVVDVYKEDTAISEDGVR 317
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8955.17147.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.360e-11555.06protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.570e-10272.62protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8955contigEcto-sp9_F_contig8955:248..4206 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-05_004130.1
Exons5
Model size798
Cds size798
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8955.17147.1prot_Ecto-sp9_F_contig8955.17147.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8955 248..4206 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930954.50526-CDS-Ecto-sp9_F_contig8955:247..3731622930954.50526-CDS-Ecto-sp9_F_contig8955:247..373Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8955 248..373 +
1692278965.343863-CDS-Ecto-sp9_F_contig8955:247..3731692278965.343863-CDS-Ecto-sp9_F_contig8955:247..373Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8955 248..373 +
1622930954.522463-CDS-Ecto-sp9_F_contig8955:1389..15201622930954.522463-CDS-Ecto-sp9_F_contig8955:1389..1520Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8955 1390..1520 +
1692278965.35441-CDS-Ecto-sp9_F_contig8955:1389..15201692278965.35441-CDS-Ecto-sp9_F_contig8955:1389..1520Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8955 1390..1520 +
1622930954.5459597-CDS-Ecto-sp9_F_contig8955:1946..21401622930954.5459597-CDS-Ecto-sp9_F_contig8955:1946..2140Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8955 1947..2140 +
1692278965.3638544-CDS-Ecto-sp9_F_contig8955:1946..21401692278965.3638544-CDS-Ecto-sp9_F_contig8955:1946..2140Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8955 1947..2140 +
1622930954.5627959-CDS-Ecto-sp9_F_contig8955:2825..30201622930954.5627959-CDS-Ecto-sp9_F_contig8955:2825..3020Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8955 2826..3020 +
1692278965.3770125-CDS-Ecto-sp9_F_contig8955:2825..30201692278965.3770125-CDS-Ecto-sp9_F_contig8955:2825..3020Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8955 2826..3020 +
1622930954.5798392-CDS-Ecto-sp9_F_contig8955:4054..42061622930954.5798392-CDS-Ecto-sp9_F_contig8955:4054..4206Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8955 4055..4206 +
1692278965.3905585-CDS-Ecto-sp9_F_contig8955:4054..42061692278965.3905585-CDS-Ecto-sp9_F_contig8955:4054..4206Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8955 4055..4206 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8955.17147.1

>prot_Ecto-sp9_F_contig8955.17147.1 ID=prot_Ecto-sp9_F_contig8955.17147.1|Name=mRNA_Ecto-sp9_F_contig8955.17147.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=266bp
MFHQSQVFAEVVGASTVSVPDDEIEICLEAGFIMQLTTATVEGEDYYYNF
DLVVPGRDSSSDLSVSAAPDEDAQAFICGELEELEDVVANATVADATAAP
VLPLPVETPAPSPAVRGLASPAPTSVGVDGGGGGAVVTTVAPTAVDGGGG
GEGEGNNMEGQECMIPEEAPCTSTAATIAHTNQGVGSYYDPTCAAAAAAA
ATASEEGELPEGCDPSSADSCRFCLFNTPRWQDKNPGEDLPDLVDCPCCV
LDVYKEDTAISEDGVR
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mRNA from alignment at Ecto-sp9_F_contig8955:248..4206+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8955.17147.1 ID=mRNA_Ecto-sp9_F_contig8955.17147.1|Name=mRNA_Ecto-sp9_F_contig8955.17147.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3959bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8955:248..4206+ (Ectocarpus species9 EcSCA_722f female)
ATGTTCCATCAGTCCCAGGTGTTCGCGGAGGTGGTGGGGGCGAGCACGGT
GTCCGTCCCGGACGACGAGATAGAGATCTGCCTCGAGGCCGGGTTCATAA
TGCAGCTGACCACCGCTACGGTGGAGGTGAGCAGGCGGGCGTACTGCCGT
ACGCACCAGTCATTGGACATCTCGAGTGTGTGTGTGTGTGTGTTTTTATT
ATTAGCATCGACCGCGCTAACTGGCTGACCAGTTAAAAGACGCCAGTCTC
AGTGCGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTTGCCTCCTCA
GGCAGGCAGGGCAATCGCAAAGCCGCTTGACACCGGAATAAAACGCTCAC
TCTTCTTTTTGTTGGCACGGGGCTGGAACTACCTCATGTGAACCCATAGG
GTATGCATACAGCAGTAGTACACTAGTTTATGTTGCTTTGCCCATCGTTG
CCCATCGTTGATGGGGAGGTGATGGTTCTGTTTTTGTTTGTATCGGCGAT
TTGGGCCGGTAGTGGTACTTGCGGTCACCCTCGGGCCCATGTTTCCTATT
TACAAGTGGGCTTTTTTGACGTTCAAAGCTTGGTGAATTCTCGCTTGTCT
TGGCGGTTGGTCCGTGCACCGCTGCCGTGTGGTTTCTCGCCCACTGCCGT
TTTTTCCACCCTGGTCATTGCACCGTCCAGGAACTGATTTTTTTGCACAC
TTTTTTTTTTTTTTTCAAATTTTGGCCCTTGCTTGTGGTCTGACTGACTT
TTTTCGTGTAGTTATGGTAGCGGTGGGTTCTGTAGCTCTTTAGTTGGCGT
CGAGATGTGCCGTGTGTCTTTCGAAGGTGCTCGCTGCTGCTATCTTGGCC
CTGTCATCACAGCGCTGGGTAAGCGGTGCGTGCATGTGGCGGCCGGCAGC
TGCTTTGCTAGTCTGAAAGCGTACAGGGAAAACACGCGGCCATGCTGTCC
ACTTTTCATCTCACTGTACTGTCCCCTCTCCGCGGTCTTTCTGCCGCAAG
ATTTCGCCGAGAACATCGACTTGACCCCCCCCCCTCCACGTCTGTTCTTT
CCCTTCCCCCGCGTCAAACTTCCGCCCGTCCTCCTCCCCGCTCATGCCAC
CCACCACCCACCGAAATGAACAAACGCAACCAAACACGACAGGGTGAGGA
TTACTACTACAATTTCGACCTCGTGGTCCCAGGTCGGGACAGCTCGTCCG
ACCTCTCCGTATCCGCGGCGCCGGACGAAGACGCCCAGGCCTTCATCTGC
GGGGAGCTCGAAGAGCTCGAAGAGTCCACCCCGTCCCCCGTGACACCAGT
GCCCCCGACCCCCGAACCCACGGCGCCCCCGCCCGAGCCTACCCCCGCCC
CGGTCACACCCATCCCCCCAACCCCCGAACCCACGTCGCCCCCTCCGGAG
CCGACACCTTCCCCCGTCACACCCATCCCACCGACCCCTGATCCCACGGC
ACCCCCTCCCGAGCCAACCCCCGCTCCCGTCACACCGATCCCCCCGACTC
CTGATCCCACGGCGCCCCCTCCCGACCCGACCCCTTCCCCCGTGGCGGCG
CCCACGCCGCCGCCGACGCCTCACCCGACGACGCCGCCCCCGGTCGCTAC
CCTGGCTCCGGTTGCGCCTGAAACTCCGGCGCCGGTCGTCGCGGAGACCT
TGGCTCCGTCTGCGGCAGCGGCGACGATCGCGAGCACGAGCGCCCCGAGC
GTGGTGGCCAACGCCACCGTCGCCGACGCCACCGCTGCGCCCGTCTTGCC
GCTGCCGGTGGAGACGCCGGCACCATCGCCGGCCGTGAGGGGTCTCGCGA
GTCCGGCGCCGACGAGCGTCGGGGTGGACGGGGGAGGCGGGGGTGCCGTG
GTGACTACCGTGGCGCCGACGGCGGTGGACGGGGGAGGCGGGGGTGCCGT
GGTGACTACCGTGGCGCCGACGGCGGTGGCTACGTCCACAGGTGATAGTA
ATGTATGTGTGTGTTTGTGTGTTTTGCGTCGACCGCACCGGTTATAGCAG
CGCGGGTGCGCAGATACGTGCGTGATCTCTCTGAGAGTATAAGCATCGAC
ACAGCAGTAGCGCTGACCTAACAAGAAGAGAAGAGGTCAGTCTTGTCAGA
AGACATGTCGGAAAGAAACGCCAACGAACGCGCTTTGTATTCCGCGGGTC
CCCTCGACAGCAGGAGGAAGGTACGTGTGTTTGTGTGTGTATCGACCGTC
ATGGCCGATCGGTCAAAGACAAGGTCATCGATCGTTGATGGTAGAAAGCG
AGAAACGCTGCCGAGAGCAAGGGCGTTGTGTGTGTGTGCGTGCGTGCGTG
CGTGCGTTTTGTTTGTTGACGATTGTCTTCACCAGCCAGTGAATTCAGCT
ACCTGGCCAAACACCTGTCGTTGTGGCTGCTGTCTCTTGTCTTGATAGAG
TCGGTGCCACCCCCACTGGTACTGTTTTCCGGCGGATGGTGTGCTTGCTT
GGCAGTCGCTCGTGTGTCTGTTTTCTGTATTTCCTGTCTGTGTTATCCTG
TATGTGTTGCCTGGCTAGAAAATTCTGACTTGTCTCTGTCCTGATCTTCA
ATTCACCTAACCCCCGTGCCGCCGAAAGGTGAGGGAGAGGGAAACAATAT
GGAAGGGCAGGAGTGCATGATCCCAGAAGAGGCCCCCTGCACGAGCACCG
CCGCCACAATCGCTCACACGAACCAGGGGGTAGGGTCCTACTACGACCCC
ACTTGCGCAGCAGCAGCAGCAGCAGCAGCCACGGCGTCGGAAGAGGGGGA
GTTGCCGGAGGGATGCGACCCAAGTGAGTAGTTCGTTGCCGCCACGGCCG
CCGCTTTCGCTGCTGCGGTTAAGTGGTCCCGCTAAAATACCGGTTGAATA
ATGCCGTTTGCCCGGTATGACGCCGGTGGAATGGAGTGGCACAGACGGAT
TTTTTTCAAGTAGTTTCATGCTCTGAAAAATGCCGGTTGCCCGCTACGAT
GCCGGTTCAAGGGGCTGACACCTACCGCCATTATAGCGTGACCGCTGCTG
CTCTGATGTTGCTGCTATGTAGCGCCTCGTGTTTTCTATTTTGTATGCAT
AGATTATATATATATTTTTTGTGGGATACACTCCCGCCTCTTGTTTTTTG
CAATTCCTCGGACCGAGGACGCTCGCCAGGAAGAGATACAAGTAGATACC
CACGAGTTGGTGAACGCGAGCGGAGTTTTCTTTCATGGCGCTGCCCTCTC
ATGCGTAGGACACGGCTCTCTCTCTCCGTCTCTTTCTCTCTCTCTGACAC
TGCTGTCTCTCTTGAGTCGTTCCACTCTGGGAAACGGACCGCTGGCGTCT
CGATAGCAGTAGAACGAGAAGCAACAGAGAGCAACCCTCCCTATGTAGTG
CGCCGCATTTCCGGTTCTTCGATTCGATTCGGGTTACGGTCACCGTTTGC
GCTTCGTCTGAGACTGCGATTGCCTTTTGGGCCGCCTCAACAGAAAAGTT
CGTCATCGTAAATTGCATGCACAAAGGTGATGGCAGTTGAGGTTATGGAA
TTGGGGCACCCGTCACGTGTGCACCTCCCCAAAGCCGAGCTTCCCGATTT
GACTTGGTTTCGCCGCCGCAGTTTGTCCATCCGTCCTCTGACGGCACTGC
TGCACCTTCTGCTGCTGCTGCTGCTGCTAGTCCTTGCTCATCTTCCTCTG
CTTCTGCCGCTGCCTGCTTGTTGTCCTTCTTGTCTGCTGCCGCTGCTCCA
TGCTTCTTCTTCTTCGGCCGCTGCTGCTGGTTGTTGTTGTTGTTCTTCTT
TCTTCTCTGCTGCTCTGCTGCTGGTTGGTTCTGGTTCTGCCGGTTGTGCC
GGTTCAGGCTCGGCGGACTCGTGCCGCTTCTGCCTCTTCAACACCCCTCG
GTGGCAAGACAAGAACCCGGGAGAGGACCTGCCCGATCTGGTGGATTGCC
CGTGCTGCGTGTTGGACGTCTACAAGGAGGACACGGCCATCAGCGAGGAT
GGAGTTAGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8955:248..4206+

>mRNA_Ecto-sp9_F_contig8955.17147.1 ID=mRNA_Ecto-sp9_F_contig8955.17147.1|Name=mRNA_Ecto-sp9_F_contig8955.17147.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1596bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8955:248..4206+ (Ectocarpus species9 EcSCA_722f female)
ATGTTCCATCAGTCCCAGGTGTTCGCGGAGGTGGTGGGGGCGAGCACGGT
GTCCGTCCCGGACGACGAGATAGAGATCTGCCTCGAGGCCGGGTTCATAA
TGCAGCTGACCACCGCTACGGTGGAGATGTTCCATCAGTCCCAGGTGTTC
GCGGAGGTGGTGGGGGCGAGCACGGTGTCCGTCCCGGACGACGAGATAGA
GATCTGCCTCGAGGCCGGGTTCATAATGCAGCTGACCACCGCTACGGTGG
AGGGTGAGGATTACTACTACAATTTCGACCTCGTGGTCCCAGGTCGGGAC
AGCTCGTCCGACCTCTCCGTATCCGCGGCGCCGGACGAAGACGCCCAGGC
CTTCATCTGCGGGGAGCTCGAAGAGCTCGAAGAGGTGAGGATTACTACTA
CAATTTCGACCTCGTGGTCCCAGGTCGGGACAGCTCGTCCGACCTCTCCG
TATCCGCGGCGCCGGACGAAGACGCCCAGGCCTTCATCTGCGGGGAGCTC
GAAGAGCTCGAAGACGTGGTGGCCAACGCCACCGTCGCCGACGCCACCGC
TGCGCCCGTCTTGCCGCTGCCGGTGGAGACGCCGGCACCATCGCCGGCCG
TGAGGGGTCTCGCGAGTCCGGCGCCGACGAGCGTCGGGGTGGACGGGGGA
GGCGGGGGTGCCGTGGTGACTACCGTGGCGCCGACGGCGGTGGACGGGGG
AGGCGGGGCGTGGTGGCCAACGCCACCGTCGCCGACGCCACCGCTGCGCC
CGTCTTGCCGCTGCCGGTGGAGACGCCGGCACCATCGCCGGCCGTGAGGG
GTCTCGCGAGTCCGGCGCCGACGAGCGTCGGGGTGGACGGGGGAGGCGGG
GGTGCCGTGGTGACTACCGTGGCGCCGACGGCGGTGGACGGGGGAGGCGG
GGGTGAGGGAGAGGGAAACAATATGGAAGGGCAGGAGTGCATGATCCCAG
AAGAGGCCCCCTGCACGAGCACCGCCGCCACAATCGCTCACACGAACCAG
GGGGTAGGGTCCTACTACGACCCCACTTGCGCAGCAGCAGCAGCAGCAGC
AGCCACGGCGTCGGAAGAGGGGGAGTTGCCGGAGGGATGCGACCCAAGTG
AGGGAGAGGGAAACAATATGGAAGGGCAGGAGTGCATGATCCCAGAAGAG
GCCCCCTGCACGAGCACCGCCGCCACAATCGCTCACACGAACCAGGGGGT
AGGGTCCTACTACGACCCCACTTGCGCAGCAGCAGCAGCAGCAGCAGCCA
CGGCGTCGGAAGAGGGGGAGTTGCCGGAGGGATGCGACCCAAGCTCGGCG
GACTCGTGCCGCTTCTGCCTCTTCAACACCCCTCGGTGGCAAGACAAGAA
CCCGGGAGAGGACCTGCCCGATCTGGTGGATTGCCCGTGCTGCGTGTTGG
ACGTCTACAAGGAGGACACGGCCATCAGCGAGGATGGAGTTAGAGCTCGG
CGGACTCGTGCCGCTTCTGCCTCTTCAACACCCCTCGGTGGCAAGACAAG
AACCCGGGAGAGGACCTGCCCGATCTGGTGGATTGCCCGTGCTGCGTGTT
GGACGTCTACAAGGAGGACACGGCCATCAGCGAGGATGGAGTTAGA
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